More than 300 homologs were found in PanDaTox collection
for query gene VEA_001012 on replicon NC_013457
Organism: Vibrio sp. Ex25



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013457  VEA_001012  putative two-component response regulator  100 
 
 
408 aa  848    Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_07090  nitrogen regulation protein NtrX  84.52 
 
 
407 aa  732    Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_003910  CPS_2013  C4-dicarboxylate transport transcriptional regulatory protein  31.1 
 
 
453 aa  213  5.999999999999999e-54  Colwellia psychrerythraea 34H  Bacteria  normal  0.618445  n/a   
 
 
-
 
NC_009831  Ssed_2912  two component, sigma54 specific, Fis family transcriptional regulator  31.63 
 
 
455 aa  209  5e-53  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3913  helix-turn-helix, Fis-type  32.65 
 
 
442 aa  209  9e-53  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.289305  normal  0.253976 
 
 
-
 
NC_009092  Shew_1442  two component, sigma54 specific, Fis family transcriptional regulator  32.02 
 
 
455 aa  206  4e-52  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2504  two component, sigma54 specific, Fis family transcriptional regulator  30.79 
 
 
459 aa  206  5e-52  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_72720  putative two-component response regulator  31.54 
 
 
447 aa  206  6e-52  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.269979  normal 
 
 
-
 
NC_007005  Psyr_3995  helix-turn-helix, Fis-type  33.77 
 
 
444 aa  204  2e-51  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0385153 
 
 
-
 
NC_007347  Reut_A0275  helix-turn-helix, Fis-type  32.72 
 
 
441 aa  204  3e-51  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1424  two component, sigma54 specific, Fis family transcriptional regulator  30.04 
 
 
459 aa  204  3e-51  Shewanella sp. MR-7  Bacteria  normal  normal  0.545985 
 
 
-
 
NC_008577  Shewana3_1412  two component, sigma54 specific, Fis family transcriptional regulator  30.27 
 
 
459 aa  204  3e-51  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2347  two component, sigma54 specific, Fis family transcriptional regulator  32.14 
 
 
450 aa  203  4e-51  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_4176  sigma-54 dependent transcriptional regulator/response regulator  31.74 
 
 
442 aa  201  9.999999999999999e-51  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.999918  n/a   
 
 
-
 
NC_008321  Shewmr4_1359  two component, sigma54 specific, Fis family transcriptional regulator  30.04 
 
 
459 aa  202  9.999999999999999e-51  Shewanella sp. MR-4  Bacteria  normal  normal  0.0913399 
 
 
-
 
NC_012560  Avin_18020  sigma54-dependent response regulator of C4 dicarboxylate transport, two component; DctD  30.7 
 
 
446 aa  201  1.9999999999999998e-50  Azotobacter vinelandii DJ  Bacteria  normal  0.266513  n/a   
 
 
-
 
NC_010506  Swoo_1722  two component, sigma54 specific, Fis family transcriptional regulator  31.17 
 
 
455 aa  201  3e-50  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.0267167 
 
 
-
 
NC_008700  Sama_2213  response regulator receiver protein  31.47 
 
 
461 aa  200  3.9999999999999996e-50  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3138  C4-dicarboxylate transport transcriptional regulatory protein  30.27 
 
 
459 aa  199  9e-50  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_004047  C4-dicarboxylate transport transcriptional regulatory protein  30.63 
 
 
445 aa  198  1.0000000000000001e-49  Vibrio sp. Ex25  Bacteria  normal  0.114732  n/a   
 
 
-
 
NC_002947  PP_1401  two component, sigma54 specific, transcriptional regulator, Fis family  31.71 
 
 
444 aa  197  4.0000000000000005e-49  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0188  two component, sigma54 specific, transcriptional regulator, Fis family  32.04 
 
 
438 aa  197  4.0000000000000005e-49  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_2828  two component, sigma54 specific, Fis family transcriptional regulator  29.82 
 
 
459 aa  196  4.0000000000000005e-49  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_03680  C4 dicarboxylate two-component response regulator, sigma54-dependent; DctD2  30.7 
 
 
461 aa  196  5.000000000000001e-49  Azotobacter vinelandii DJ  Bacteria  normal  0.0105245  n/a   
 
 
-
 
NC_012856  Rpic12D_0194  two component, sigma54 specific, transcriptional regulator, Fis family  32.04 
 
 
438 aa  196  5.000000000000001e-49  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0392315 
 
 
-
 
NC_008345  Sfri_2719  two component, sigma54 specific, transcriptional regulator, Fis family protein  31.03 
 
 
457 aa  196  5.000000000000001e-49  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_4292  sigma-54 dependent transcriptional regulator/response regulator  31.1 
 
 
444 aa  196  8.000000000000001e-49  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4458  two component, sigma-54 specific, Fis family transcriptional regulator  32 
 
 
442 aa  196  8.000000000000001e-49  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.741172  normal 
 
 
-
 
NC_009439  Pmen_4561  two component, sigma54 specific, Fis family transcriptional regulator  31.24 
 
 
446 aa  195  1e-48  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_2953  two component, sigma54 specific, Fis family transcriptional regulator  29.82 
 
 
459 aa  195  1e-48  Shewanella baltica OS195  Bacteria  normal  normal  0.0277282 
 
 
-
 
NC_007963  Csal_2407  two component, sigma54 specific, Fis family transcriptional regulator  30.38 
 
 
461 aa  195  1e-48  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_4410  two component, sigma54 specific, Fis family transcriptional regulator  31.03 
 
 
444 aa  194  2e-48  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4322  two component, sigma54 specific, Fis family transcriptional regulator  31.49 
 
 
444 aa  194  2e-48  Pseudomonas putida F1  Bacteria  normal  0.713581  normal 
 
 
-
 
NC_011663  Sbal223_1548  two component, sigma54 specific, transcriptional regulator, Fis family  29.82 
 
 
459 aa  194  2e-48  Shewanella baltica OS223  Bacteria  normal  0.816634  normal 
 
 
-
 
NC_009654  Mmwyl1_0915  two component, sigma54 specific, Fis family transcriptional regulator  29.3 
 
 
452 aa  194  3e-48  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_2810  two component, sigma54 specific, Fis family transcriptional regulator  29.6 
 
 
459 aa  193  4e-48  Shewanella baltica OS155  Bacteria  normal  0.776829  n/a   
 
 
-
 
NC_009656  PSPA7_6313  putative two-component response regulator  30.27 
 
 
447 aa  193  5e-48  Pseudomonas aeruginosa PA7  Bacteria  normal  0.86051  n/a   
 
 
-
 
NC_007492  Pfl01_4540  two component, sigma-54 specific, Fis family transcriptional regulator  31.9 
 
 
442 aa  193  5e-48  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.203781  normal  0.155775 
 
 
-
 
NC_010322  PputGB1_4346  two component, sigma54 specific, Fis family transcriptional regulator  30.43 
 
 
442 aa  192  6e-48  Pseudomonas putida GB-1  Bacteria  normal  0.788839  normal 
 
 
-
 
NC_010622  Bphy_0227  two component, sigma54 specific, Fis family transcriptional regulator  30.14 
 
 
452 aa  192  8e-48  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0230  Fis family transcriptional regulator  30.66 
 
 
444 aa  192  8e-48  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_1095  two component, sigma54 specific, Fis family transcriptional regulator  30.21 
 
 
442 aa  192  8e-48  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_0712  C4-dicarboxylate transport sigma-54 regulatory protein  30.32 
 
 
446 aa  191  2e-47  Psychromonas ingrahamii 37  Bacteria  normal  0.212594  normal 
 
 
-
 
NC_002947  PP_1066  two component, sigma54 specific, transcriptional regulator, Fis family  30.21 
 
 
442 aa  190  2.9999999999999997e-47  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_2882  two component, sigma54 specific, Fis family transcriptional regulator  29.41 
 
 
450 aa  191  2.9999999999999997e-47  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.486122  normal 
 
 
-
 
NC_008060  Bcen_2257  two component, sigma54 specific, Fis family transcriptional regulator  29.41 
 
 
450 aa  190  2.9999999999999997e-47  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_2871  two component, sigma54 specific, Fis family transcriptional regulator  29.41 
 
 
450 aa  190  2.9999999999999997e-47  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0598017  n/a   
 
 
-
 
NC_003295  RSc0332  C4-dicarboxylate transport response regulator transcription regulator protein  31.81 
 
 
438 aa  190  4e-47  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1107  two component, sigma54 specific, Fis family transcriptional regulator  30.21 
 
 
442 aa  190  4e-47  Pseudomonas putida F1  Bacteria  normal  normal  0.248973 
 
 
-
 
NC_010501  PputW619_1042  two component, sigma54 specific, Fis family transcriptional regulator  30.13 
 
 
444 aa  190  5e-47  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_0432  two component, sigma54 specific, Fis family transcriptional regulator  29.75 
 
 
450 aa  190  5e-47  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0401  C4-dicarboxylate transport transcriptional regulatory protein  29.84 
 
 
451 aa  188  1e-46  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2818  C4-dicarboxylate transport transcriptional regulatory protein  29.91 
 
 
451 aa  188  2e-46  Burkholderia mallei NCTC 10247  Bacteria  normal  0.896177  n/a   
 
 
-
 
NC_011369  Rleg2_3169  two component, sigma54 specific, transcriptional regulator, Fis family  28.89 
 
 
444 aa  187  2e-46  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.254755  normal  0.187976 
 
 
-
 
NC_006348  BMA3226  C4-dicarboxylate transport transcriptional regulatory protein  29.91 
 
 
451 aa  188  2e-46  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0642  C4-dicarboxylate transport transcriptional regulatory protein  29.91 
 
 
451 aa  188  2e-46  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0458  C4-dicarboxylate transport transcriptional response regulator DctD  29.91 
 
 
451 aa  188  2e-46  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1392  C4-dicarboxylate transport transcriptional regulatory protein  29.91 
 
 
451 aa  188  2e-46  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0478  C4-dicarboxylate transport transcriptional response regulator DctD  29.91 
 
 
451 aa  188  2e-46  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A4195  two component, sigma-54 specific, Fis family transcriptional regulator  29.06 
 
 
450 aa  187  2e-46  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.314648 
 
 
-
 
NC_010681  Bphyt_0520  two component, sigma54 specific, transcriptional regulator, Fis family  29.06 
 
 
450 aa  187  2e-46  Burkholderia phytofirmans PsJN  Bacteria  normal  0.150741  normal 
 
 
-
 
NC_008785  BMASAVP1_A0201  C4-dicarboxylate transport transcriptional regulatory protein  29.91 
 
 
451 aa  188  2e-46  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0588  Fis family transcriptional regulator  30.3 
 
 
458 aa  187  3e-46  Cupriavidus metallidurans CH34  Bacteria  normal  0.651672  normal 
 
 
-
 
NC_010551  BamMC406_2788  two component, sigma54 specific, Fis family transcriptional regulator  29.68 
 
 
451 aa  186  7e-46  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_2926  two component, sigma54 specific, Fis family transcriptional regulator  29.68 
 
 
451 aa  186  7e-46  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_4770  two component, sigma54 specific, Fis family transcriptional regulator  30.53 
 
 
446 aa  184  2.0000000000000003e-45  Methylobacterium sp. 4-46  Bacteria  normal  0.133057  normal  0.593625 
 
 
-
 
NC_007510  Bcep18194_A6213  two component, sigma54 specific, Fis family transcriptional regulator  29.45 
 
 
451 aa  184  2.0000000000000003e-45  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_1776  two component, sigma54 specific, Fis family transcriptional regulator  28.92 
 
 
455 aa  184  2.0000000000000003e-45  Xanthobacter autotrophicus Py2  Bacteria  normal  0.227849  normal  0.279906 
 
 
-
 
NC_012850  Rleg_3460  two component, sigma54 specific, transcriptional regulator, Fis family  28.79 
 
 
444 aa  184  3e-45  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0376131  normal 
 
 
-
 
NC_010002  Daci_4293  two component, sigma54 specific, Fis family transcriptional regulator  28.67 
 
 
448 aa  183  4.0000000000000006e-45  Delftia acidovorans SPH-1  Bacteria  normal  0.475037  normal 
 
 
-
 
NC_007347  Reut_A2669  two component, sigma54 specific, Fis family transcriptional regulator  30.75 
 
 
439 aa  182  7e-45  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0278  two component, sigma54 specific, Fis family transcriptional regulator  28.73 
 
 
468 aa  182  7e-45  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_4294  two component, sigma54 specific, Fis family transcriptional regulator  29.91 
 
 
461 aa  182  1e-44  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.595978 
 
 
-
 
NC_010501  PputW619_4947  two component, sigma54 specific, Fis family transcriptional regulator  28.73 
 
 
469 aa  181  2e-44  Pseudomonas putida W619  Bacteria  normal  0.669147  hitchhiker  0.0000241398 
 
 
-
 
NC_009457  VC0395_A1516  C4-dicarboxylate transport transcriptional regulatory protein  29.5 
 
 
446 aa  181  2e-44  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_68250  two-component response regulator  29.29 
 
 
462 aa  181  2e-44  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.371358  normal  0.144717 
 
 
-
 
NC_002947  PP_0263  two component, sigma54 specific, transcriptional regulator, Fis family  28.51 
 
 
468 aa  180  4.999999999999999e-44  Pseudomonas putida KT2440  Bacteria  normal  0.513605  normal  0.0177919 
 
 
-
 
NC_010322  PputGB1_0288  two component, sigma54 specific, Fis family transcriptional regulator  28.73 
 
 
468 aa  179  1e-43  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_2964  two component, sigma54 specific, Fis family transcriptional regulator  28.11 
 
 
441 aa  178  1e-43  Paracoccus denitrificans PD1222  Bacteria  normal  0.0210387  normal  0.108805 
 
 
-
 
NC_009668  Oant_3478  two component, sigma54 specific, Fis family transcriptional regulator  27.68 
 
 
450 aa  177  2e-43  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_4050  putative two-component response regulator  28.7 
 
 
441 aa  177  2e-43  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4689  two component, sigma54 specific, Fis family transcriptional regulator  30.02 
 
 
447 aa  178  2e-43  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.338732 
 
 
-
 
NC_009654  Mmwyl1_1002  two component, sigma54 specific, Fis family transcriptional regulator  30.79 
 
 
455 aa  177  3e-43  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_2541  two component, sigma54 specific, Fis family transcriptional regulator  28.22 
 
 
438 aa  177  3e-43  Jannaschia sp. CCS1  Bacteria  normal  0.281957  normal  0.250281 
 
 
-
 
NC_011988  Avi_6228  two component response regulator for C4-dicarboxylate transport  29.07 
 
 
458 aa  176  6e-43  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1435  two component, sigma54 specific, Fis family transcriptional regulator  29.57 
 
 
445 aa  176  6e-43  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0274365  n/a   
 
 
-
 
NC_009656  PSPA7_5905  two-component response regulator  28.83 
 
 
462 aa  176  6e-43  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0287  two component, sigma-54 specific, Fis family transcriptional regulator  27.99 
 
 
462 aa  175  9.999999999999999e-43  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.378858 
 
 
-
 
NC_007511  Bcep18194_B0306  two component, sigma54 specific, Fis family transcriptional regulator  29.09 
 
 
453 aa  175  9.999999999999999e-43  Burkholderia sp. 383  Bacteria  normal  0.794109  normal 
 
 
-
 
NC_010524  Lcho_2681  two component, sigma54 specific, Fis family transcriptional regulator  29.32 
 
 
444 aa  175  9.999999999999999e-43  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.818562 
 
 
-
 
NC_010725  Mpop_3260  two component, sigma54 specific, transcriptional regulator, Fis family  29.31 
 
 
450 aa  174  2.9999999999999996e-42  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4176  two component, sigma54 specific, Fis family transcriptional regulator  29.24 
 
 
452 aa  174  2.9999999999999996e-42  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.280959 
 
 
-
 
NC_009952  Dshi_1081  two component  28.18 
 
 
441 aa  174  2.9999999999999996e-42  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.136641  normal  0.653656 
 
 
-
 
NC_008044  TM1040_1461  two component, sigma54 specific, Fis family transcriptional regulator  27.95 
 
 
445 aa  174  3.9999999999999995e-42  Ruegeria sp. TM1040  Bacteria  normal  0.0783973  normal  0.675596 
 
 
-
 
NC_007908  Rfer_3453  two component, sigma54 specific, Fis family transcriptional regulator  29.12 
 
 
445 aa  173  5.999999999999999e-42  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0715  two component, sigma54 specific, Fis family transcriptional regulator  28.05 
 
 
442 aa  173  5.999999999999999e-42  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0889351  normal  0.39603 
 
 
-
 
NC_010524  Lcho_4338  two component, sigma54 specific, Fis family transcriptional regulator  28.25 
 
 
456 aa  172  9e-42  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011757  Mchl_3285  two component, sigma54 specific, transcriptional regulator, Fis family  29.08 
 
 
450 aa  172  1e-41  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_5669  two component, sigma54 specific, Fis family transcriptional regulator  29.82 
 
 
454 aa  171  2e-41  Burkholderia phymatum STM815  Bacteria  normal  0.946519  normal 
 
 
-
 
NC_007493  RSP_2130  two component, sigma54 specific, Fis family transcriptional regulator  28.44 
 
 
442 aa  171  2e-41  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.558101  n/a   
 
 
-
 
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