| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1461 |
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| Symbol | |
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| ID | 4077758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1561389 |
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| End bp | 1562726 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638006772 |
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| Product | two component, sigma54 specific, Fis family transcriptional regulator |
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| Protein accession | YP_613456 |
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| Protein GI | 99081302 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0783973 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.675596 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACAGG CCATGAAAAT TGCGATTGTG GATGACGAAC AGGACATGCG TCAGTCGATC
AGCCAATGGC TGGCACTGTC TGGCTATGAC ACCGAAACAT TCGCCAGCGC CGAGGATGCG
CTCAAGGCGC TGGGGCCGGA TTATCCGGGC ATTGTGATTT CCGACATCAA AATGCCGGGC
ATGGACGGGA TGCAGTTCCT CAAGAAACTC ATGGGATCGG ACAGTTCGCT GCCGGTGATC
ATGATCACCG GTCACGGCGA TGTGCCGATG GCAGTCGAGG CCATGCGCGT CGGAGCGTTT
GATTTTCTCG AAAAACCCTT CAACCCTGAC CGCATGTCGG AGCTGGCCAA GCGCGCCACT
GGCGCACGAC GGTTGACGCT CGATACACGT GCGCTGCGCC GCGAGCTTTC CGATGGCGGT
CAAATCATGA AGAAGCTGAT CGGAACCAGC CCCGTTATGG ACCGCCTGCG CGAGGACATT
CTCGACCTCG GCCAGGCGGA TGGCCATGTT CTGATCGACG GGGAAACCGG CACCGGCAAA
ACGCTCGTTG CGCATGCGCT TCATGCCGTG GGCAGCCGCG CGGGCAAGAA ATTCGTGCTG
GTGTCCTGTG CCGCTCTTGA GGAAGAAGCA CTCGCCAAAC GTCTGTTTGG TCCCATGCAG
CCCGAAGACA GCATGCTGCC CGCCGTCGAA GAGGCCCGTG GCGGCACCCT TGTGTTGGAG
GATGTCGAGG CGCTGAGCGA AGCCCTGCAG GCGAAGCTCT TGAGCTTTAT CAACGAGCAG
GGCATTCCGG GCGAGACCCG CATCATTGCG ATCTCCAACC TGCAGGAGGC GGGGAAAACC
TCCGAGGATG TACTGCGCGC CGATCTCTTT TATCGCTTGG CCGCGCTGCG CATCACGGTG
CCCCCGTTGC GCCAGCGGGG CGAGGACATC CTGACGCTGT TCACTCGCCT GTCGGAACAA
TTTTCCGAGG AATACGGCTG CGAGGCGCCG CAGGTGACGG CGCAGGAGGC TGCGCAGCTC
TTGCAGGCGC CGTGGCCCGG TAACGTTCGT CAGCTGATCA ACGTGGCAGA GCGCGCAGTG
CTGCAATCGC GCCGCGGCTC AGGCACCATT GCCTCTCTCT TGATGAGCGA CCACGAAGAT
ATGCAGCCGG TGATGACCAC CGAAGGCAAG CCTCTGAAAG AATACGTCGA AGCCTTTGAA
CGTATGTTGA TCGACAACAC CATGCGTCGT CACAAGGGGT CTATCGCTTC GGTGATGGAA
GAGCTCTGCC TGCCGCGTCG AACGCTGAAT GAGAAAATGG CGAAATACGG CCTGCAGCGC
TCCGACTATC TCGGCTGA
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| Protein sequence | MAQAMKIAIV DDEQDMRQSI SQWLALSGYD TETFASAEDA LKALGPDYPG IVISDIKMPG
MDGMQFLKKL MGSDSSLPVI MITGHGDVPM AVEAMRVGAF DFLEKPFNPD RMSELAKRAT
GARRLTLDTR ALRRELSDGG QIMKKLIGTS PVMDRLREDI LDLGQADGHV LIDGETGTGK
TLVAHALHAV GSRAGKKFVL VSCAALEEEA LAKRLFGPMQ PEDSMLPAVE EARGGTLVLE
DVEALSEALQ AKLLSFINEQ GIPGETRIIA ISNLQEAGKT SEDVLRADLF YRLAALRITV
PPLRQRGEDI LTLFTRLSEQ FSEEYGCEAP QVTAQEAAQL LQAPWPGNVR QLINVAERAV
LQSRRGSGTI ASLLMSDHED MQPVMTTEGK PLKEYVEAFE RMLIDNTMRR HKGSIASVME
ELCLPRRTLN EKMAKYGLQR SDYLG
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