More than 300 homologs were found in PanDaTox collection
for query gene Dshi_1081 on replicon NC_009952
Organism: Dinoroseobacter shibae DFL 12



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009428  Rsph17025_0715  two component, sigma54 specific, Fis family transcriptional regulator  77.88 
 
 
442 aa  706    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0889351  normal  0.39603 
 
 
-
 
NC_009049  Rsph17029_0805  two component, sigma54 specific, Fis family transcriptional regulator  77.65 
 
 
442 aa  705    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_2130  two component, sigma54 specific, Fis family transcriptional regulator  77.88 
 
 
442 aa  707    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.558101  n/a   
 
 
-
 
NC_009952  Dshi_1081  two component  100 
 
 
441 aa  898    Dinoroseobacter shibae DFL 12  Bacteria  normal  0.136641  normal  0.653656 
 
 
-
 
NC_007802  Jann_2541  two component, sigma54 specific, Fis family transcriptional regulator  76.77 
 
 
438 aa  689    Jannaschia sp. CCS1  Bacteria  normal  0.281957  normal  0.250281 
 
 
-
 
NC_008687  Pden_2964  two component, sigma54 specific, Fis family transcriptional regulator  74.27 
 
 
441 aa  674    Paracoccus denitrificans PD1222  Bacteria  normal  0.0210387  normal  0.108805 
 
 
-
 
NC_008044  TM1040_1461  two component, sigma54 specific, Fis family transcriptional regulator  77.93 
 
 
445 aa  700    Ruegeria sp. TM1040  Bacteria  normal  0.0783973  normal  0.675596 
 
 
-
 
NC_012560  Avin_18020  sigma54-dependent response regulator of C4 dicarboxylate transport, two component; DctD  43.93 
 
 
446 aa  349  7e-95  Azotobacter vinelandii DJ  Bacteria  normal  0.266513  n/a   
 
 
-
 
NC_007005  Psyr_3995  helix-turn-helix, Fis-type  44.05 
 
 
444 aa  347  2e-94  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0385153 
 
 
-
 
NC_009512  Pput_4322  two component, sigma54 specific, Fis family transcriptional regulator  44.05 
 
 
444 aa  346  4e-94  Pseudomonas putida F1  Bacteria  normal  0.713581  normal 
 
 
-
 
NC_009439  Pmen_4561  two component, sigma54 specific, Fis family transcriptional regulator  43.05 
 
 
446 aa  346  6e-94  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_4292  sigma-54 dependent transcriptional regulator/response regulator  43.76 
 
 
444 aa  345  1e-93  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_1401  two component, sigma54 specific, transcriptional regulator, Fis family  44.05 
 
 
444 aa  343  2.9999999999999997e-93  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_4410  two component, sigma54 specific, Fis family transcriptional regulator  43.83 
 
 
444 aa  343  5e-93  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_1042  two component, sigma54 specific, Fis family transcriptional regulator  43.61 
 
 
444 aa  340  2.9999999999999998e-92  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_72720  putative two-component response regulator  42.6 
 
 
447 aa  336  3.9999999999999995e-91  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.269979  normal 
 
 
-
 
NC_007492  Pfl01_4458  two component, sigma-54 specific, Fis family transcriptional regulator  41.85 
 
 
442 aa  329  8e-89  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.741172  normal 
 
 
-
 
NC_009656  PSPA7_6313  putative two-component response regulator  42.23 
 
 
447 aa  325  8.000000000000001e-88  Pseudomonas aeruginosa PA7  Bacteria  normal  0.86051  n/a   
 
 
-
 
NC_012560  Avin_03680  C4 dicarboxylate two-component response regulator, sigma54-dependent; DctD2  42.42 
 
 
461 aa  316  7e-85  Azotobacter vinelandii DJ  Bacteria  normal  0.0105245  n/a   
 
 
-
 
NC_012856  Rpic12D_0194  two component, sigma54 specific, transcriptional regulator, Fis family  39.6 
 
 
438 aa  314  2.9999999999999996e-84  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0392315 
 
 
-
 
NC_010682  Rpic_0188  two component, sigma54 specific, transcriptional regulator, Fis family  39.6 
 
 
438 aa  313  2.9999999999999996e-84  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2407  two component, sigma54 specific, Fis family transcriptional regulator  40.17 
 
 
461 aa  312  6.999999999999999e-84  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A2669  two component, sigma54 specific, Fis family transcriptional regulator  41.85 
 
 
439 aa  309  5e-83  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2875  two component, sigma54 specific, Fis family transcriptional regulator  38.99 
 
 
457 aa  309  5.9999999999999995e-83  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.0385307 
 
 
-
 
NC_007973  Rmet_0588  Fis family transcriptional regulator  41.46 
 
 
458 aa  309  8e-83  Cupriavidus metallidurans CH34  Bacteria  normal  0.651672  normal 
 
 
-
 
NC_003295  RSc0332  C4-dicarboxylate transport response regulator transcription regulator protein  39.6 
 
 
438 aa  308  1.0000000000000001e-82  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4293  two component, sigma54 specific, Fis family transcriptional regulator  40.7 
 
 
448 aa  306  6e-82  Delftia acidovorans SPH-1  Bacteria  normal  0.475037  normal 
 
 
-
 
NC_009654  Mmwyl1_0915  two component, sigma54 specific, Fis family transcriptional regulator  37.66 
 
 
452 aa  306  6e-82  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3913  helix-turn-helix, Fis-type  39.38 
 
 
442 aa  302  6.000000000000001e-81  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.289305  normal  0.253976 
 
 
-
 
NC_007298  Daro_0477  two component, sigma54 specific, Fis family transcriptional regulator  41.7 
 
 
443 aa  300  4e-80  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_1095  two component, sigma54 specific, Fis family transcriptional regulator  38.84 
 
 
442 aa  300  4e-80  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0263  two component, sigma54 specific, transcriptional regulator, Fis family  41.78 
 
 
468 aa  300  5e-80  Pseudomonas putida KT2440  Bacteria  normal  0.513605  normal  0.0177919 
 
 
-
 
NC_009439  Pmen_4294  two component, sigma54 specific, Fis family transcriptional regulator  40.58 
 
 
461 aa  299  6e-80  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.595978 
 
 
-
 
NC_010322  PputGB1_4346  two component, sigma54 specific, Fis family transcriptional regulator  39.06 
 
 
442 aa  298  1e-79  Pseudomonas putida GB-1  Bacteria  normal  0.788839  normal 
 
 
-
 
NC_010322  PputGB1_0288  two component, sigma54 specific, Fis family transcriptional regulator  41.78 
 
 
468 aa  298  2e-79  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0278  two component, sigma54 specific, Fis family transcriptional regulator  41.56 
 
 
468 aa  297  2e-79  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1442  two component, sigma54 specific, Fis family transcriptional regulator  40.04 
 
 
455 aa  298  2e-79  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4689  two component, sigma54 specific, Fis family transcriptional regulator  39.2 
 
 
447 aa  298  2e-79  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.338732 
 
 
-
 
NC_007908  Rfer_3453  two component, sigma54 specific, Fis family transcriptional regulator  40.31 
 
 
445 aa  297  3e-79  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_4176  sigma-54 dependent transcriptional regulator/response regulator  38.72 
 
 
442 aa  296  6e-79  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.999918  n/a   
 
 
-
 
NC_009457  VC0395_A1516  C4-dicarboxylate transport transcriptional regulatory protein  39.16 
 
 
446 aa  296  6e-79  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3169  two component, sigma54 specific, transcriptional regulator, Fis family  38.53 
 
 
444 aa  296  7e-79  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.254755  normal  0.187976 
 
 
-
 
NC_008700  Sama_2213  response regulator receiver protein  39.17 
 
 
461 aa  295  9e-79  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_1066  two component, sigma54 specific, transcriptional regulator, Fis family  38.75 
 
 
442 aa  295  1e-78  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0287  two component, sigma-54 specific, Fis family transcriptional regulator  40.04 
 
 
462 aa  295  1e-78  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.378858 
 
 
-
 
NC_007511  Bcep18194_B0306  two component, sigma54 specific, Fis family transcriptional regulator  36.95 
 
 
453 aa  294  2e-78  Burkholderia sp. 383  Bacteria  normal  0.794109  normal 
 
 
-
 
NC_009512  Pput_1107  two component, sigma54 specific, Fis family transcriptional regulator  38.75 
 
 
442 aa  294  2e-78  Pseudomonas putida F1  Bacteria  normal  normal  0.248973 
 
 
-
 
NC_007973  Rmet_0230  Fis family transcriptional regulator  38.05 
 
 
444 aa  293  3e-78  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_004047  C4-dicarboxylate transport transcriptional regulatory protein  38.19 
 
 
445 aa  293  4e-78  Vibrio sp. Ex25  Bacteria  normal  0.114732  n/a   
 
 
-
 
NC_012850  Rleg_3460  two component, sigma54 specific, transcriptional regulator, Fis family  38.31 
 
 
444 aa  293  6e-78  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0376131  normal 
 
 
-
 
NC_007347  Reut_A0275  helix-turn-helix, Fis-type  37.89 
 
 
441 aa  292  9e-78  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_0227  two component, sigma54 specific, Fis family transcriptional regulator  37.69 
 
 
452 aa  291  1e-77  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4947  two component, sigma54 specific, Fis family transcriptional regulator  40.89 
 
 
469 aa  291  1e-77  Pseudomonas putida W619  Bacteria  normal  0.669147  hitchhiker  0.0000241398 
 
 
-
 
NC_008391  Bamb_4692  two component, sigma54 specific, Fis family transcriptional regulator  36.95 
 
 
453 aa  291  1e-77  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0995721 
 
 
-
 
NC_003910  CPS_2013  C4-dicarboxylate transport transcriptional regulatory protein  37.47 
 
 
453 aa  291  2e-77  Colwellia psychrerythraea 34H  Bacteria  normal  0.618445  n/a   
 
 
-
 
NC_007651  BTH_I0401  C4-dicarboxylate transport transcriptional regulatory protein  37.53 
 
 
451 aa  291  2e-77  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_2681  two component, sigma54 specific, Fis family transcriptional regulator  36.73 
 
 
444 aa  290  4e-77  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.818562 
 
 
-
 
NC_010515  Bcenmc03_4926  two component, sigma54 specific, Fis family transcriptional regulator  37.17 
 
 
453 aa  290  4e-77  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4176  two component, sigma54 specific, Fis family transcriptional regulator  35.81 
 
 
452 aa  290  4e-77  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.280959 
 
 
-
 
NC_010625  Bphy_5669  two component, sigma54 specific, Fis family transcriptional regulator  37.14 
 
 
454 aa  290  4e-77  Burkholderia phymatum STM815  Bacteria  normal  0.946519  normal 
 
 
-
 
NC_004578  PSPTO_5399  sigma-54 dependent transcriptional regulator/response regulator  40.35 
 
 
461 aa  290  5.0000000000000004e-77  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3285  two component, sigma54 specific, transcriptional regulator, Fis family  38.72 
 
 
450 aa  289  7e-77  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4540  two component, sigma-54 specific, Fis family transcriptional regulator  37.64 
 
 
442 aa  289  8e-77  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.203781  normal  0.155775 
 
 
-
 
NC_009656  PSPA7_5905  two-component response regulator  41.2 
 
 
462 aa  289  8e-77  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_68250  two-component response regulator  40.98 
 
 
462 aa  289  8e-77  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.371358  normal  0.144717 
 
 
-
 
NC_008785  BMASAVP1_A0201  C4-dicarboxylate transport transcriptional regulatory protein  37.22 
 
 
451 aa  288  2e-76  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_4050  putative two-component response regulator  38.55 
 
 
441 aa  288  2e-76  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA3226  C4-dicarboxylate transport transcriptional regulatory protein  37.22 
 
 
451 aa  288  2e-76  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4938  helix-turn-helix, Fis-type  40.35 
 
 
463 aa  288  2e-76  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007434  BURPS1710b_0642  C4-dicarboxylate transport transcriptional regulatory protein  37.22 
 
 
451 aa  288  2e-76  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1392  C4-dicarboxylate transport transcriptional regulatory protein  37.22 
 
 
451 aa  288  2e-76  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0478  C4-dicarboxylate transport transcriptional response regulator DctD  37.22 
 
 
451 aa  288  2e-76  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2818  C4-dicarboxylate transport transcriptional regulatory protein  37.22 
 
 
451 aa  288  2e-76  Burkholderia mallei NCTC 10247  Bacteria  normal  0.896177  n/a   
 
 
-
 
NC_009074  BURPS668_0458  C4-dicarboxylate transport transcriptional response regulator DctD  37.22 
 
 
451 aa  288  2e-76  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_1135  C4-dicarboxylate transport transcriptional regulatory protein  38.02 
 
 
450 aa  287  2.9999999999999996e-76  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_1249  two component, sigma54 specific, Fis family transcriptional regulator  37.31 
 
 
452 aa  286  5e-76  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3260  two component, sigma54 specific, transcriptional regulator, Fis family  38.27 
 
 
450 aa  286  5e-76  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_5342  two component, sigma54 specific, Fis family transcriptional regulator  37.61 
 
 
453 aa  286  5.999999999999999e-76  Burkholderia cenocepacia HI2424  Bacteria  normal  0.71249  normal  0.508922 
 
 
-
 
NC_008061  Bcen_3024  two component, sigma54 specific, Fis family transcriptional regulator  37.61 
 
 
453 aa  286  5.999999999999999e-76  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_1258  sigma-54 factor interaction domain-containing protein  38.6 
 
 
451 aa  285  9e-76  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.438925 
 
 
-
 
NC_011757  Mchl_1419  two component, sigma54 specific, transcriptional regulator, Fis family  38.6 
 
 
451 aa  285  9e-76  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.895196 
 
 
-
 
NC_009668  Oant_3478  two component, sigma54 specific, Fis family transcriptional regulator  35.01 
 
 
450 aa  284  2.0000000000000002e-75  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3061  sigma-54 factor interaction domain-containing protein  38.16 
 
 
450 aa  284  2.0000000000000002e-75  Methylobacterium extorquens PA1  Bacteria  normal  0.305462  normal 
 
 
-
 
NC_010084  Bmul_0432  two component, sigma54 specific, Fis family transcriptional regulator  37.75 
 
 
450 aa  283  3.0000000000000004e-75  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_46990  putative two-component response regulator  40.1 
 
 
425 aa  283  3.0000000000000004e-75  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0103448  normal  0.161007 
 
 
-
 
NC_010552  BamMC406_5221  two component, sigma54 specific, Fis family transcriptional regulator  37.39 
 
 
453 aa  282  9e-75  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_3388  two component, sigma54 specific, Fis family transcriptional regulator  38.5 
 
 
453 aa  281  1e-74  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_2788  two component, sigma54 specific, Fis family transcriptional regulator  37.25 
 
 
451 aa  281  1e-74  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2719  two component, sigma54 specific, transcriptional regulator, Fis family protein  37.67 
 
 
457 aa  281  1e-74  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_2926  two component, sigma54 specific, Fis family transcriptional regulator  37.25 
 
 
451 aa  281  1e-74  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_4405  two component, sigma54 specific, Fis family transcriptional regulator  38.75 
 
 
448 aa  281  2e-74  Paracoccus denitrificans PD1222  Bacteria  normal  0.851623  normal  0.211367 
 
 
-
 
NC_008709  Ping_0712  C4-dicarboxylate transport sigma-54 regulatory protein  38.36 
 
 
446 aa  281  2e-74  Psychromonas ingrahamii 37  Bacteria  normal  0.212594  normal 
 
 
-
 
NC_010681  Bphyt_0520  two component, sigma54 specific, transcriptional regulator, Fis family  36.95 
 
 
450 aa  280  3e-74  Burkholderia phytofirmans PsJN  Bacteria  normal  0.150741  normal 
 
 
-
 
NC_010725  Mpop_1208  two component, sigma54 specific, transcriptional regulator, Fis family  38.94 
 
 
458 aa  279  5e-74  Methylobacterium populi BJ001  Bacteria  normal  0.320827  normal  0.373488 
 
 
-
 
NC_010508  Bcenmc03_2882  two component, sigma54 specific, Fis family transcriptional regulator  37.09 
 
 
450 aa  279  6e-74  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.486122  normal 
 
 
-
 
NC_009952  Dshi_1196  two component, sigma54 specific, transcriptional regulator  37.92 
 
 
448 aa  279  8e-74  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.588017 
 
 
-
 
NC_009654  Mmwyl1_1002  two component, sigma54 specific, Fis family transcriptional regulator  37.1 
 
 
455 aa  279  9e-74  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2257  two component, sigma54 specific, Fis family transcriptional regulator  37.09 
 
 
450 aa  279  9e-74  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_2871  two component, sigma54 specific, Fis family transcriptional regulator  37.09 
 
 
450 aa  279  9e-74  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0598017  n/a   
 
 
-
 
NC_009720  Xaut_1776  two component, sigma54 specific, Fis family transcriptional regulator  37.53 
 
 
455 aa  278  1e-73  Xanthobacter autotrophicus Py2  Bacteria  normal  0.227849  normal  0.279906 
 
 
-
 
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