| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2541 |
|---|
| Symbol | |
|---|
| ID | 3935004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 2544718 |
|---|
| End bp | 2546034 |
|---|
| Gene Length | 1317 bp |
|---|
| Protein Length | 438 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637904905 |
|---|
| Product | two component, sigma54 specific, Fis family transcriptional regulator |
|---|
| Protein accession | YP_510483 |
|---|
| Protein GI | 89055032 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.281957 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.250281 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCG CGATTGTAGA TGATGAGCAG GACATGCGGC AGTCGATCAG CCAGTGGCTG
GCGCTGTCGG GCTTTGACAC CGAAACCTAT TCCAGCGCGG AAGAGGCATT GAAGGCCATC
GGCTCGGATT TTCCGGGCGT TGTGGTCACG GACGTGAAAA TGCCCGGCAT GGACGGCATG
GCCTTCCTGA AGCGGCTGAT GGGTGTGGAT AGCGGCATCC CGGTCATCCT GATCACGGGC
CACGGCGATG TGCCGATGGC GGTGGAGGCG ATGCGGATCG GGGCCTATGA TTTCTTGGAA
AAGCCGTTCA ACCCGGATCG GATGACGGAT CTGGCCAAGC GGGCGGGGCA GCAGCGCCGC
TTGACGCTGG ACAACCGTGC CCTGCGGCGG GAACTCAGCG ACGGCACCGT TTTGATGCGC
AAGCTGATCG GGTCGAGCCC GGTGATGGAA CGGTTGCGCG AAGATATTCT GGATCTTGGC
CAGGCCGACG GTCATGTGCT GATCACCGGC GAGACGGGCA CCGGCAAAAC GCTTGTCGCC
CATGCGCTGC ATGCCGTGGG TCCGCGCGCG GGTAAGCATT TCGTCGTGCT GTCCTGTGCG
GCCCATGAGG AGGAGGAGCT GGCCTCACAA CTCTTCGGTC CCGTCGGCGA AGATCAGGAC
AAGCCGCTGG TGGAGCAGGC GCGCGGCGGC ACGCTGGTGC TGGAGGATGT GGAGGCGCTG
TCGCAAGCCC TGCAAGCGCG CCTTCTGACG TTCATCAACG ATCAGGGCAC GCCGGCCGAG
ACGCGCATCG TGGCCATTTG CAACGCGCCC GAGCCCGATC AATGCGAAGG CGCGCTCCGG
CCCGATCTGT TCTACCGCCT TGCCGCCATG CGGATCGATC TGCCGCCCCT GCGCCAGCGG
GGCGAGGATA TCCTGACGCT GTTCACCCGC TTCGGGGAGC AATTCAGCGA GGAATACGGG
ACGGAAGCCC CCCAAGTCAC CGCGCAGGAA GCGGCACAGC TTCTGCAAGC GCCCTGGCCC
GGCAATGTGC GCCAACTGAT CAACATCTCC GAGCGCGCGA TCCTGCAACA AAGGCGTGGG
TCGGGGTCCA TCGCGTCGCT GCTGATGAGC GACAACACCC AGATCGCACC GCAGGCGATG
GGGGAGGGCA AGCCCCTGAA GGAATATGTG GAGGCGTTCG AGAGGATGCT GATCGATAAC
ACCATGCGGC GTCATCGCGG CTCCATCGCG AGTGTCATGG ATGAGTTGTG CCTGCCGCGC
CGGACGTTGA ATGAGAAGAT GGCAAAGTAT GGGTTGAGCC GGTCCGATTA TCTGTGA
|
|---|
| Protein sequence | MKIAIVDDEQ DMRQSISQWL ALSGFDTETY SSAEEALKAI GSDFPGVVVT DVKMPGMDGM
AFLKRLMGVD SGIPVILITG HGDVPMAVEA MRIGAYDFLE KPFNPDRMTD LAKRAGQQRR
LTLDNRALRR ELSDGTVLMR KLIGSSPVME RLREDILDLG QADGHVLITG ETGTGKTLVA
HALHAVGPRA GKHFVVLSCA AHEEEELASQ LFGPVGEDQD KPLVEQARGG TLVLEDVEAL
SQALQARLLT FINDQGTPAE TRIVAICNAP EPDQCEGALR PDLFYRLAAM RIDLPPLRQR
GEDILTLFTR FGEQFSEEYG TEAPQVTAQE AAQLLQAPWP GNVRQLINIS ERAILQQRRG
SGSIASLLMS DNTQIAPQAM GEGKPLKEYV EAFERMLIDN TMRRHRGSIA SVMDELCLPR
RTLNEKMAKY GLSRSDYL
|
|---|
| |