292 homologs were found in PanDaTox collection
for query gene Gbem_2691 on replicon NC_011146
Organism: Geobacter bemidjiensis Bem



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011146  Gbem_2691  cobalamin B12-binding domain protein  100 
 
 
134 aa  270  5.000000000000001e-72  Geobacter bemidjiensis Bem  Bacteria  normal  0.0118523  n/a   
 
 
-
 
NC_012918  GM21_1548  cobalamin B12-binding domain protein  98.51 
 
 
134 aa  266  5.9999999999999995e-71  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000166361 
 
 
-
 
NC_009483  Gura_2026  cobalamin B12-binding domain-containing protein  84.33 
 
 
134 aa  233  5.0000000000000005e-61  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000113125  n/a   
 
 
-
 
NC_008609  Ppro_0388  cobalamin B12-binding domain-containing protein  81.34 
 
 
134 aa  226  1e-58  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000031654  n/a   
 
 
-
 
NC_009483  Gura_3482  cobalamin B12-binding domain-containing protein  78.95 
 
 
134 aa  224  5.0000000000000005e-58  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1578  B12-binding protein  76.87 
 
 
134 aa  221  3e-57  Geobacter sulfurreducens PCA  Bacteria  normal  0.432317  n/a   
 
 
-
 
NC_007517  Gmet_1574  methylmalonyl-CoA mutase-like  79.1 
 
 
134 aa  221  3e-57  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000332572  normal  0.305791 
 
 
-
 
NC_007760  Adeh_1832  methylmalonyl-CoA mutase  70.45 
 
 
140 aa  199  9e-51  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.436511  n/a   
 
 
-
 
NC_011145  AnaeK_2028  cobalamin B12-binding domain protein  69.7 
 
 
140 aa  199  9.999999999999999e-51  Anaeromyxobacter sp. K  Bacteria  normal  0.655901  n/a   
 
 
-
 
NC_011891  A2cp1_2098  cobalamin B12-binding domain protein  69.7 
 
 
140 aa  198  1.9999999999999998e-50  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1989  cobalamin B12-binding domain-containing protein  67.42 
 
 
139 aa  189  8e-48  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_1854  cobalamin B12-binding domain-containing protein  70.08 
 
 
137 aa  189  8e-48  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1910  cobalamin B12-binding domain protein  62.69 
 
 
134 aa  186  1e-46  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.374857  normal  0.0962097 
 
 
-
 
NC_009253  Dred_1769  cobalamin B12-binding domain-containing protein  61.94 
 
 
134 aa  183  7e-46  Desulfotomaculum reducens MI-1  Bacteria  decreased coverage  0.00734137  n/a   
 
 
-
 
NC_013946  Mrub_1574  cobalamin B12-binding domain-containing protein  65.65 
 
 
137 aa  179  1e-44  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.0630027 
 
 
-
 
NC_011830  Dhaf_2692  cobalamin B12-binding domain protein  67.72 
 
 
140 aa  178  2e-44  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_3814  cobalamin B12-binding domain-containing protein  65.87 
 
 
134 aa  177  4.999999999999999e-44  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_1673  cobalamin B12-binding domain protein  65.12 
 
 
153 aa  176  7e-44  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009953  Sare_4204  cobalamin B12-binding domain-containing protein  65.08 
 
 
134 aa  175  2e-43  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00605014 
 
 
-
 
NC_008148  Rxyl_2369  methylmalonyl-CoA mutase-like protein  64.84 
 
 
133 aa  175  2e-43  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.308524  n/a   
 
 
-
 
NC_011831  Cagg_0587  cobalamin B12-binding domain protein  65.12 
 
 
135 aa  172  9.999999999999999e-43  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.901029 
 
 
-
 
NC_014212  Mesil_1715  cobalamin B12-binding domain protein  64 
 
 
139 aa  172  1.9999999999999998e-42  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_1432  methylmalonyl-CoA mutase  60.31 
 
 
140 aa  172  1.9999999999999998e-42  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.329321 
 
 
-
 
NC_013131  Caci_7994  cobalamin B12-binding domain protein  64 
 
 
135 aa  171  2.9999999999999996e-42  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_1487  cobalamin B12-binding domain protein  62.9 
 
 
135 aa  171  2.9999999999999996e-42  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.40083  normal  0.12756 
 
 
-
 
NC_008578  Acel_0377  methylmalonyl-CoA mutase-like  63.08 
 
 
158 aa  171  2.9999999999999996e-42  Acidothermus cellulolyticus 11B  Bacteria  normal  0.99713  normal 
 
 
-
 
NC_013440  Hoch_3774  cobalamin B12-binding domain protein  57.25 
 
 
157 aa  169  1e-41  Haliangium ochraceum DSM 14365  Bacteria  normal  0.137195  normal  0.13274 
 
 
-
 
NC_013947  Snas_6220  cobalamin B12-binding domain-containing protein  66.67 
 
 
134 aa  168  2e-41  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1242  methylmalonyl-CoA mutase  63.49 
 
 
135 aa  167  5e-41  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.00778509 
 
 
-
 
NC_013061  Phep_4240  cobalamin B12-binding domain protein  58.78 
 
 
139 aa  166  1e-40  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_1541  methylmalonyl-CoA mutase, alpha subunit  58.46 
 
 
151 aa  166  1e-40  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0770461  normal 
 
 
-
 
NC_014210  Ndas_0059  cobalamin B12-binding domain protein  59.09 
 
 
136 aa  163  5.9999999999999996e-40  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  hitchhiker  0.000107152 
 
 
-
 
NC_013132  Cpin_0241  cobalamin B12-binding domain protein  60.31 
 
 
139 aa  163  5.9999999999999996e-40  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0550  cobalamin B12-binding domain-containing protein  64.52 
 
 
133 aa  163  8e-40  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_0289  cobalamin B12-binding domain protein  59.38 
 
 
140 aa  162  1.0000000000000001e-39  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3987  cobalamin B12-binding domain-containing protein  62.02 
 
 
137 aa  162  1.0000000000000001e-39  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0195294  n/a   
 
 
-
 
NC_008699  Noca_3591  cobalamin B12-binding domain-containing protein  64 
 
 
143 aa  162  1.0000000000000001e-39  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_4641  cobalamin B12-binding domain protein  65.12 
 
 
143 aa  160  5.0000000000000005e-39  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.123677 
 
 
-
 
CP001800  Ssol_0081  cobalamin B12-binding domain protein  61.29 
 
 
141 aa  159  1e-38  Sulfolobus solfataricus 98/2  Archaea  normal  n/a   
 
 
-
 
NC_009767  Rcas_2998  cobalamin B12-binding domain-containing protein  61.72 
 
 
134 aa  159  1e-38  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.651513  normal  0.0337584 
 
 
-
 
NC_012029  Hlac_0510  cobalamin B12-binding domain protein  58.33 
 
 
139 aa  158  3e-38  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  0.736031  normal  0.90311 
 
 
-
 
NC_009616  Tmel_0582  cobalamin B12-binding domain-containing protein  59.69 
 
 
133 aa  157  4e-38  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013744  Htur_4360  cobalamin B12-binding domain protein  58.59 
 
 
138 aa  157  5e-38  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.36975  n/a   
 
 
-
 
NC_008554  Sfum_0457  cobalamin B12-binding domain-containing protein  56.35 
 
 
133 aa  156  7e-38  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.364165 
 
 
-
 
NC_009523  RoseRS_2024  cobalamin B12-binding domain-containing protein  60.94 
 
 
134 aa  156  7e-38  Roseiflexus sp. RS-1  Bacteria  normal  decreased coverage  0.000794891 
 
 
-
 
NC_009440  Msed_2055  cobalamin B12-binding domain-containing protein  61.48 
 
 
155 aa  156  8e-38  Metallosphaera sedula DSM 5348  Archaea  normal  normal 
 
 
-
 
NC_013922  Nmag_2472  cobalamin B12-binding domain protein  58.27 
 
 
152 aa  156  1e-37  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_013743  Htur_0900  cobalamin B12-binding domain protein  58.59 
 
 
138 aa  155  1e-37  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_013202  Hmuk_2805  cobalamin B12-binding domain protein  55.12 
 
 
142 aa  154  6e-37  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.069341  normal 
 
 
-
 
NC_013124  Afer_0318  cobalamin B12-binding domain protein  56.91 
 
 
162 aa  150  8e-36  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_013744  Htur_3836  cobalamin B12-binding domain protein  55.81 
 
 
138 aa  149  1e-35  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.692162  n/a   
 
 
-
 
NC_013926  Aboo_1359  cobalamin B12-binding domain protein  59.35 
 
 
128 aa  143  1e-33  Aciduliprofundum boonei T469  Archaea  hitchhiker  0.000000000160657  n/a   
 
 
-
 
NC_013235  Namu_1263  cobalamin B12-binding domain protein  61.98 
 
 
149 aa  141  3e-33  Nakamurella multipartita DSM 44233  Bacteria  normal  0.728671  normal  0.8637 
 
 
-
 
NC_009718  Fnod_1322  cobalamin B12-binding domain-containing protein  56.15 
 
 
136 aa  140  5e-33  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_009717  Xaut_5018  cobalamin B12-binding domain-containing protein  51.24 
 
 
135 aa  137  3.9999999999999997e-32  Xanthobacter autotrophicus Py2  Bacteria  normal  0.622944  normal 
 
 
-
 
NC_008826  Mpe_B0538  methylmalonyl-CoA mutase C-terminal domain-containing protein  50 
 
 
136 aa  136  7.999999999999999e-32  Methylibium petroleiphilum PM1  Bacteria  normal  decreased coverage  0.000893241 
 
 
-
 
NC_008146  Mmcs_3825  methylmalonyl-CoA mutase C-terminal domain-containing protein  59.5 
 
 
132 aa  135  1e-31  Mycobacterium sp. MCS  Bacteria  normal  0.438631  n/a   
 
 
-
 
NC_008705  Mkms_3899  cobalamin B12-binding domain-containing protein  59.5 
 
 
132 aa  135  1e-31  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3811  cobalamin B12-binding domain-containing protein  59.5 
 
 
132 aa  135  1e-31  Mycobacterium sp. JLS  Bacteria  normal  0.0469463  normal  0.0948206 
 
 
-
 
NC_009050  Rsph17029_3654  cobalamin B12-binding domain-containing protein  50.42 
 
 
135 aa  134  3.0000000000000003e-31  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.136466 
 
 
-
 
NC_008726  Mvan_4260  cobalamin B12-binding domain-containing protein  58.2 
 
 
133 aa  133  8e-31  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.480541 
 
 
-
 
NC_009338  Mflv_2388  cobalamin B12-binding domain-containing protein  58.68 
 
 
133 aa  133  9e-31  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.698998  normal 
 
 
-
 
NC_008699  Noca_1772  methylmalonyl-CoA mutase  58.56 
 
 
680 aa  130  3.9999999999999996e-30  Nocardioides sp. JS614  Bacteria  normal  0.292142  n/a   
 
 
-
 
NC_010085  Nmar_0958  cobalamin B12-binding domain-containing protein  51.18 
 
 
140 aa  130  6e-30  Nitrosopumilus maritimus SCM1  Archaea  n/a    hitchhiker  0.0044288 
 
 
-
 
NC_009921  Franean1_4309  cobalamin B12-binding domain-containing protein  57.02 
 
 
133 aa  129  1.0000000000000001e-29  Frankia sp. EAN1pec  Bacteria  normal  normal  0.734858 
 
 
-
 
NC_009621  Smed_5088  cobalamin B12-binding domain-containing protein  50.4 
 
 
153 aa  127  6e-29  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4193  methylmalonyl-CoA mutase, large subunit  54.46 
 
 
670 aa  122  2e-27  Conexibacter woesei DSM 14684  Bacteria  normal  0.669168  normal  0.90036 
 
 
-
 
NC_009953  Sare_4003  methylmalonyl-CoA mutase, large subunit  54.05 
 
 
685 aa  122  2e-27  Salinispora arenicola CNS-205  Bacteria  normal  0.446619  hitchhiker  0.000372138 
 
 
-
 
NC_009380  Strop_3621  methylmalonyl-CoA mutase, large subunit  54.95 
 
 
668 aa  121  3e-27  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_1173  methylmalonyl-CoA mutase, large subunit  53.51 
 
 
1106 aa  120  6e-27  Chlorobium phaeobacteroides BS1  Bacteria  normal  decreased coverage  0.00593374 
 
 
-
 
NC_009921  Franean1_1034  methylmalonyl-CoA mutase, large subunit  52.68 
 
 
666 aa  118  3e-26  Frankia sp. EAN1pec  Bacteria  normal  0.488774  normal  0.762762 
 
 
-
 
NC_013757  Gobs_4373  methylmalonyl-CoA mutase, large subunit  50.88 
 
 
735 aa  118  3e-26  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0388  methylmalonyl-CoA mutase  51.3 
 
 
714 aa  117  4.9999999999999996e-26  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_0875  methylmalonyl-CoA mutase, large subunit  51.75 
 
 
1081 aa  117  6e-26  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.036821 
 
 
-
 
NC_007643  Rru_A3062  methylmalonyl-CoA mutase  52.68 
 
 
671 aa  116  9.999999999999999e-26  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_1223  methylmalonyl-CoA mutase  49.12 
 
 
712 aa  115  1.9999999999999998e-25  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_1226  methylmalonyl-CoA mutase, large subunit  54.46 
 
 
672 aa  115  1.9999999999999998e-25  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.6728  normal  0.0673448 
 
 
-
 
NC_009253  Dred_1771  cobalamin B12-binding domain-containing protein  43.28 
 
 
148 aa  114  3e-25  Desulfotomaculum reducens MI-1  Bacteria  normal  0.379199  n/a   
 
 
-
 
NC_008752  Aave_2510  methylmalonyl-CoA mutase  47.37 
 
 
722 aa  114  5e-25  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.178476 
 
 
-
 
NC_009719  Plav_1625  methylmalonyl-CoA mutase, large subunit  49.11 
 
 
667 aa  114  6.9999999999999995e-25  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_1702  methylmalonyl-CoA mutase  49.57 
 
 
718 aa  113  7.999999999999999e-25  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.0321557 
 
 
-
 
NC_010571  Oter_3304  methylmalonyl-CoA mutase, large subunit  43.61 
 
 
719 aa  112  1.0000000000000001e-24  Opitutus terrae PB90-1  Bacteria  decreased coverage  0.00679496  normal  0.683271 
 
 
-
 
NC_007777  Francci3_2169  methylmalonyl-CoA mutase  51.79 
 
 
692 aa  112  1.0000000000000001e-24  Frankia sp. CcI3  Bacteria  normal  0.485789  normal  0.751366 
 
 
-
 
NC_011992  Dtpsy_1849  methylmalonyl-CoA mutase  48.25 
 
 
720 aa  112  1.0000000000000001e-24  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2040  methylmalonyl-CoA mutase  48.25 
 
 
720 aa  112  1.0000000000000001e-24  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_2697  methylmalonyl-CoA mutase  43.7 
 
 
720 aa  112  1.0000000000000001e-24  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.20812 
 
 
-
 
NC_007493  RSP_2192  methylmalonyl-CoA mutase  50.43 
 
 
709 aa  112  2.0000000000000002e-24  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.172259  n/a   
 
 
-
 
NC_007512  Plut_1292  methylmalonyl-CoA mutase  46.49 
 
 
714 aa  112  2.0000000000000002e-24  Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.816153 
 
 
-
 
NC_008025  Dgeo_1320  methylmalonyl-CoA mutase  49.12 
 
 
722 aa  112  2.0000000000000002e-24  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2300  methylmalonyl-CoA mutase  50.43 
 
 
709 aa  112  2.0000000000000002e-24  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_0867  methylmalonyl-CoA mutase  50.43 
 
 
709 aa  112  2.0000000000000002e-24  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.134958  normal 
 
 
-
 
NC_008699  Noca_2128  cobalamin B12-binding domain-containing protein  45.97 
 
 
172 aa  111  3e-24  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3398  methylmalonyl-CoA mutase  49.12 
 
 
731 aa  111  3e-24  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.526303  normal 
 
 
-
 
NC_012791  Vapar_2127  methylmalonyl-CoA mutase  47.37 
 
 
720 aa  110  4.0000000000000004e-24  Variovorax paradoxus S110  Bacteria  normal  0.063815  n/a   
 
 
-
 
NC_009720  Xaut_1197  methylmalonyl-CoA mutase, large subunit  50 
 
 
657 aa  111  4.0000000000000004e-24  Xanthobacter autotrophicus Py2  Bacteria  normal  0.282186  normal 
 
 
-
 
NC_010002  Daci_3753  methylmalonyl-CoA mutase  48.25 
 
 
738 aa  111  4.0000000000000004e-24  Delftia acidovorans SPH-1  Bacteria  normal  0.801598  normal  0.879758 
 
 
-
 
NC_011371  Rleg2_6511  methylmalonyl-CoA mutase  46.96 
 
 
712 aa  110  6e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2805  methylmalonyl-CoA mutase  47.37 
 
 
719 aa  110  7.000000000000001e-24  Rhodoferax ferrireducens T118  Bacteria  normal  0.147831  n/a   
 
 
-
 
NC_013757  Gobs_4128  methylmalonyl-CoA mutase, large subunit  54.05 
 
 
667 aa  110  7.000000000000001e-24  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_2161  methylmalonyl-CoA mutase  47.37 
 
 
723 aa  110  8.000000000000001e-24  Polaromonas sp. JS666  Bacteria  normal  0.385791  normal  0.481947 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>