247 homologs were found in PanDaTox collection
for query gene Dred_1771 on replicon NC_009253
Organism: Desulfotomaculum reducens MI-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009253  Dred_1771  cobalamin B12-binding domain-containing protein  100 
 
 
148 aa  299  9e-81  Desulfotomaculum reducens MI-1  Bacteria  normal  0.379199  n/a   
 
 
-
 
NC_007517  Gmet_1574  methylmalonyl-CoA mutase-like  45.19 
 
 
134 aa  121  3e-27  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000332572  normal  0.305791 
 
 
-
 
NC_009483  Gura_3482  cobalamin B12-binding domain-containing protein  44.44 
 
 
134 aa  121  4e-27  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0388  cobalamin B12-binding domain-containing protein  46.67 
 
 
134 aa  120  6e-27  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000031654  n/a   
 
 
-
 
NC_002939  GSU1578  B12-binding protein  45.19 
 
 
134 aa  120  8e-27  Geobacter sulfurreducens PCA  Bacteria  normal  0.432317  n/a   
 
 
-
 
NC_009483  Gura_2026  cobalamin B12-binding domain-containing protein  45.93 
 
 
134 aa  119  9.999999999999999e-27  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000113125  n/a   
 
 
-
 
NC_011830  Dhaf_2692  cobalamin B12-binding domain protein  45.53 
 
 
140 aa  119  1.9999999999999998e-26  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1854  cobalamin B12-binding domain-containing protein  51.22 
 
 
137 aa  118  3e-26  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_0377  methylmalonyl-CoA mutase-like  42.96 
 
 
158 aa  117  3.9999999999999996e-26  Acidothermus cellulolyticus 11B  Bacteria  normal  0.99713  normal 
 
 
-
 
NC_011145  AnaeK_2028  cobalamin B12-binding domain protein  44.62 
 
 
140 aa  115  1.9999999999999998e-25  Anaeromyxobacter sp. K  Bacteria  normal  0.655901  n/a   
 
 
-
 
NC_013061  Phep_4240  cobalamin B12-binding domain protein  43.7 
 
 
139 aa  115  1.9999999999999998e-25  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_2691  cobalamin B12-binding domain protein  43.28 
 
 
134 aa  114  3e-25  Geobacter bemidjiensis Bem  Bacteria  normal  0.0118523  n/a   
 
 
-
 
NC_007760  Adeh_1832  methylmalonyl-CoA mutase  44.62 
 
 
140 aa  114  3.9999999999999997e-25  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.436511  n/a   
 
 
-
 
NC_011891  A2cp1_2098  cobalamin B12-binding domain protein  44.62 
 
 
140 aa  114  6e-25  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_013744  Htur_4360  cobalamin B12-binding domain protein  42.65 
 
 
138 aa  114  6e-25  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.36975  n/a   
 
 
-
 
NC_013946  Mrub_1574  cobalamin B12-binding domain-containing protein  47.79 
 
 
137 aa  114  6.9999999999999995e-25  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.0630027 
 
 
-
 
NC_014212  Mesil_1715  cobalamin B12-binding domain protein  47.06 
 
 
139 aa  112  1.0000000000000001e-24  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1910  cobalamin B12-binding domain protein  42.96 
 
 
134 aa  112  1.0000000000000001e-24  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.374857  normal  0.0962097 
 
 
-
 
NC_012918  GM21_1548  cobalamin B12-binding domain protein  41.79 
 
 
134 aa  111  3e-24  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000166361 
 
 
-
 
NC_013743  Htur_0900  cobalamin B12-binding domain protein  41.18 
 
 
138 aa  110  5e-24  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_009380  Strop_3814  cobalamin B12-binding domain-containing protein  44.8 
 
 
134 aa  110  8.000000000000001e-24  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_4204  cobalamin B12-binding domain-containing protein  44.8 
 
 
134 aa  110  9e-24  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00605014 
 
 
-
 
NC_013744  Htur_3836  cobalamin B12-binding domain protein  41.18 
 
 
138 aa  110  9e-24  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.692162  n/a   
 
 
-
 
NC_009675  Anae109_1989  cobalamin B12-binding domain-containing protein  42.31 
 
 
139 aa  109  1.0000000000000001e-23  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1769  cobalamin B12-binding domain-containing protein  42.22 
 
 
134 aa  108  2.0000000000000002e-23  Desulfotomaculum reducens MI-1  Bacteria  decreased coverage  0.00734137  n/a   
 
 
-
 
NC_010085  Nmar_0958  cobalamin B12-binding domain-containing protein  42.86 
 
 
140 aa  107  7.000000000000001e-23  Nitrosopumilus maritimus SCM1  Archaea  n/a    hitchhiker  0.0044288 
 
 
-
 
NC_008148  Rxyl_2369  methylmalonyl-CoA mutase-like protein  41.67 
 
 
133 aa  107  7.000000000000001e-23  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.308524  n/a   
 
 
-
 
NC_013595  Sros_1242  methylmalonyl-CoA mutase  40.46 
 
 
135 aa  107  7.000000000000001e-23  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.00778509 
 
 
-
 
NC_008009  Acid345_1432  methylmalonyl-CoA mutase  43.85 
 
 
140 aa  106  1e-22  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.329321 
 
 
-
 
NC_012029  Hlac_0510  cobalamin B12-binding domain protein  39.71 
 
 
139 aa  105  3e-22  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  0.736031  normal  0.90311 
 
 
-
 
NC_008554  Sfum_0457  cobalamin B12-binding domain-containing protein  45.53 
 
 
133 aa  104  5e-22  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.364165 
 
 
-
 
NC_014210  Ndas_0059  cobalamin B12-binding domain protein  42.54 
 
 
136 aa  103  6e-22  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  hitchhiker  0.000107152 
 
 
-
 
NC_013202  Hmuk_2805  cobalamin B12-binding domain protein  38.41 
 
 
142 aa  103  7e-22  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.069341  normal 
 
 
-
 
NC_013522  Taci_0289  cobalamin B12-binding domain protein  40.14 
 
 
140 aa  103  9e-22  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1673  cobalamin B12-binding domain protein  43.9 
 
 
153 aa  103  9e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013922  Nmag_2472  cobalamin B12-binding domain protein  39.71 
 
 
152 aa  103  9e-22  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_008025  Dgeo_1541  methylmalonyl-CoA mutase, alpha subunit  42.19 
 
 
151 aa  102  1e-21  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0770461  normal 
 
 
-
 
NC_010718  Nther_1487  cobalamin B12-binding domain protein  42.74 
 
 
135 aa  102  1e-21  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.40083  normal  0.12756 
 
 
-
 
NC_013132  Cpin_0241  cobalamin B12-binding domain protein  42.52 
 
 
139 aa  102  3e-21  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_0587  cobalamin B12-binding domain protein  41.46 
 
 
135 aa  101  3e-21  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.901029 
 
 
-
 
NC_013440  Hoch_3774  cobalamin B12-binding domain protein  38.06 
 
 
157 aa  101  3e-21  Haliangium ochraceum DSM 14365  Bacteria  normal  0.137195  normal  0.13274 
 
 
-
 
NC_010003  Pmob_0550  cobalamin B12-binding domain-containing protein  43.51 
 
 
133 aa  100  5e-21  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
CP001800  Ssol_0081  cobalamin B12-binding domain protein  40.74 
 
 
141 aa  100  6e-21  Sulfolobus solfataricus 98/2  Archaea  normal  n/a   
 
 
-
 
NC_013131  Caci_7994  cobalamin B12-binding domain protein  43.9 
 
 
135 aa  100  7e-21  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2024  cobalamin B12-binding domain-containing protein  39.1 
 
 
134 aa  100  1e-20  Roseiflexus sp. RS-1  Bacteria  normal  decreased coverage  0.000794891 
 
 
-
 
NC_009972  Haur_3987  cobalamin B12-binding domain-containing protein  39.68 
 
 
137 aa  98.6  3e-20  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0195294  n/a   
 
 
-
 
NC_008826  Mpe_B0538  methylmalonyl-CoA mutase C-terminal domain-containing protein  40.62 
 
 
136 aa  98.2  3e-20  Methylibium petroleiphilum PM1  Bacteria  normal  decreased coverage  0.000893241 
 
 
-
 
NC_009050  Rsph17029_3654  cobalamin B12-binding domain-containing protein  41.46 
 
 
135 aa  97.1  7e-20  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.136466 
 
 
-
 
NC_009440  Msed_2055  cobalamin B12-binding domain-containing protein  40.71 
 
 
155 aa  97.1  8e-20  Metallosphaera sedula DSM 5348  Archaea  normal  normal 
 
 
-
 
NC_013947  Snas_6220  cobalamin B12-binding domain-containing protein  43.9 
 
 
134 aa  96.3  1e-19  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_2998  cobalamin B12-binding domain-containing protein  38.35 
 
 
134 aa  96.3  1e-19  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.651513  normal  0.0337584 
 
 
-
 
NC_008699  Noca_3591  cobalamin B12-binding domain-containing protein  40.94 
 
 
143 aa  95.9  1e-19  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013124  Afer_0318  cobalamin B12-binding domain protein  39.1 
 
 
162 aa  95.9  2e-19  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_009717  Xaut_5018  cobalamin B12-binding domain-containing protein  38.81 
 
 
135 aa  95.1  3e-19  Xanthobacter autotrophicus Py2  Bacteria  normal  0.622944  normal 
 
 
-
 
NC_013926  Aboo_1359  cobalamin B12-binding domain protein  41.67 
 
 
128 aa  95.1  3e-19  Aciduliprofundum boonei T469  Archaea  hitchhiker  0.000000000160657  n/a   
 
 
-
 
NC_013235  Namu_1263  cobalamin B12-binding domain protein  47.54 
 
 
149 aa  95.1  3e-19  Nakamurella multipartita DSM 44233  Bacteria  normal  0.728671  normal  0.8637 
 
 
-
 
NC_009718  Fnod_1322  cobalamin B12-binding domain-containing protein  40.62 
 
 
136 aa  92.4  2e-18  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0582  cobalamin B12-binding domain-containing protein  39.37 
 
 
133 aa  92.4  2e-18  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_5088  cobalamin B12-binding domain-containing protein  41.27 
 
 
153 aa  90.5  7e-18  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4641  cobalamin B12-binding domain protein  42.28 
 
 
143 aa  87.4  5e-17  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.123677 
 
 
-
 
NC_008699  Noca_2128  cobalamin B12-binding domain-containing protein  33.33 
 
 
172 aa  85.1  3e-16  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_4260  cobalamin B12-binding domain-containing protein  41.32 
 
 
133 aa  84  6e-16  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.480541 
 
 
-
 
NC_009338  Mflv_2388  cobalamin B12-binding domain-containing protein  41.18 
 
 
133 aa  81.3  0.000000000000004  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.698998  normal 
 
 
-
 
NC_008146  Mmcs_3825  methylmalonyl-CoA mutase C-terminal domain-containing protein  37.9 
 
 
132 aa  78.2  0.00000000000004  Mycobacterium sp. MCS  Bacteria  normal  0.438631  n/a   
 
 
-
 
NC_008705  Mkms_3899  cobalamin B12-binding domain-containing protein  37.9 
 
 
132 aa  78.2  0.00000000000004  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3811  cobalamin B12-binding domain-containing protein  37.9 
 
 
132 aa  78.2  0.00000000000004  Mycobacterium sp. JLS  Bacteria  normal  0.0469463  normal  0.0948206 
 
 
-
 
NC_010831  Cphamn1_1173  methylmalonyl-CoA mutase, large subunit  38.79 
 
 
1106 aa  76.3  0.0000000000001  Chlorobium phaeobacteroides BS1  Bacteria  normal  decreased coverage  0.00593374 
 
 
-
 
NC_008576  Mmc1_0388  methylmalonyl-CoA mutase  37.39 
 
 
714 aa  75.9  0.0000000000002  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_1167  methylmalonyl-CoA mutase  36.07 
 
 
712 aa  74.7  0.0000000000004  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.169366  n/a   
 
 
-
 
NC_007512  Plut_1292  methylmalonyl-CoA mutase  37.07 
 
 
714 aa  73.9  0.0000000000006  Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.816153 
 
 
-
 
NC_008025  Dgeo_1320  methylmalonyl-CoA mutase  35.65 
 
 
722 aa  71.6  0.000000000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_4309  cobalamin B12-binding domain-containing protein  40.19 
 
 
133 aa  71.6  0.000000000003  Frankia sp. EAN1pec  Bacteria  normal  normal  0.734858 
 
 
-
 
NC_007514  Cag_1223  methylmalonyl-CoA mutase  35.34 
 
 
712 aa  71.2  0.000000000004  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2208  methylmalonyl-CoA mutase-like  38.18 
 
 
135 aa  70.9  0.000000000006  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00000192903  normal  0.0126749 
 
 
-
 
NC_008639  Cpha266_1164  methylmalonyl-CoA mutase  37.07 
 
 
713 aa  70.9  0.000000000006  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.197015  n/a   
 
 
-
 
NC_011059  Paes_0875  methylmalonyl-CoA mutase, large subunit  33.62 
 
 
1081 aa  70.1  0.00000000001  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.036821 
 
 
-
 
NC_009953  Sare_4003  methylmalonyl-CoA mutase, large subunit  39.13 
 
 
685 aa  69.7  0.00000000001  Salinispora arenicola CNS-205  Bacteria  normal  0.446619  hitchhiker  0.000372138 
 
 
-
 
NC_009380  Strop_3621  methylmalonyl-CoA mutase, large subunit  38.26 
 
 
668 aa  68.6  0.00000000003  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4193  methylmalonyl-CoA mutase, large subunit  37.14 
 
 
670 aa  68.2  0.00000000004  Conexibacter woesei DSM 14684  Bacteria  normal  0.669168  normal  0.90036 
 
 
-
 
NC_009952  Dshi_0726  methylmalonyl-CoA mutase  35.65 
 
 
712 aa  68.2  0.00000000004  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.999011  normal 
 
 
-
 
NC_010803  Clim_0868  methylmalonyl-CoA mutase  35.9 
 
 
715 aa  67.8  0.00000000005  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_011371  Rleg2_6511  methylmalonyl-CoA mutase  34.78 
 
 
712 aa  67.8  0.00000000005  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_05680  methylmalonyl-CoA mutase  34.48 
 
 
726 aa  67.4  0.00000000006  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_3681  methylmalonyl-CoA mutase  34.78 
 
 
714 aa  67.4  0.00000000006  Paracoccus denitrificans PD1222  Bacteria  normal  0.542374  normal 
 
 
-
 
NC_008786  Veis_3398  methylmalonyl-CoA mutase  33.33 
 
 
731 aa  67  0.00000000008  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.526303  normal 
 
 
-
 
NC_010814  Glov_3260  methylmalonyl-CoA mutase, large subunit  34.48 
 
 
713 aa  66.6  0.0000000001  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_2199  methylmalonyl-CoA mutase, large subunit  33.33 
 
 
727 aa  66.2  0.0000000001  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_012852  Rleg_6098  methylmalonyl-CoA mutase  34.78 
 
 
712 aa  65.5  0.0000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.23929  normal  0.554736 
 
 
-
 
NC_007777  Francci3_2169  methylmalonyl-CoA mutase  38.26 
 
 
692 aa  65.9  0.0000000002  Frankia sp. CcI3  Bacteria  normal  0.485789  normal  0.751366 
 
 
-
 
NC_011988  Avi_5687  methylmalonyl-CoA mutase  34.78 
 
 
712 aa  65.5  0.0000000002  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2510  methylmalonyl-CoA mutase  35.65 
 
 
722 aa  65.5  0.0000000002  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.178476 
 
 
-
 
NC_009428  Rsph17025_2300  methylmalonyl-CoA mutase  35.65 
 
 
709 aa  66.2  0.0000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_6640  methylmalonyl-CoA mutase, large subunit  33.33 
 
 
724 aa  65.5  0.0000000003  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.70273 
 
 
-
 
NC_013169  Ksed_22170  methylmalonyl-CoA mutase  34.48 
 
 
754 aa  64.7  0.0000000004  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.366718  normal  0.398515 
 
 
-
 
NC_009523  RoseRS_0545  methylmalonyl-CoA mutase  32.33 
 
 
740 aa  64.7  0.0000000004  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_4006  methylmalonyl-CoA mutase  33.04 
 
 
716 aa  64.7  0.0000000005  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_2192  methylmalonyl-CoA mutase  34.78 
 
 
709 aa  64.7  0.0000000005  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.172259  n/a   
 
 
-
 
NC_007802  Jann_3367  methylmalonyl-CoA mutase  33.04 
 
 
709 aa  64.3  0.0000000005  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_5804  methylmalonyl-CoA mutase  32.48 
 
 
972 aa  64.3  0.0000000005  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.256305  normal  0.17905 
 
 
-
 
NC_009049  Rsph17029_0867  methylmalonyl-CoA mutase  34.78 
 
 
709 aa  64.7  0.0000000005  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.134958  normal 
 
 
-
 
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