275 homologs were found in PanDaTox collection
for query gene Mflv_2388 on replicon NC_009338
Organism: Mycobacterium gilvum PYR-GCK



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009338  Mflv_2388  cobalamin B12-binding domain-containing protein  100 
 
 
133 aa  254  2e-67  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.698998  normal 
 
 
-
 
NC_008726  Mvan_4260  cobalamin B12-binding domain-containing protein  95.49 
 
 
133 aa  244  3e-64  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.480541 
 
 
-
 
NC_008146  Mmcs_3825  methylmalonyl-CoA mutase C-terminal domain-containing protein  86.36 
 
 
132 aa  218  3e-56  Mycobacterium sp. MCS  Bacteria  normal  0.438631  n/a   
 
 
-
 
NC_008705  Mkms_3899  cobalamin B12-binding domain-containing protein  86.36 
 
 
132 aa  218  3e-56  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3811  cobalamin B12-binding domain-containing protein  86.36 
 
 
132 aa  218  3e-56  Mycobacterium sp. JLS  Bacteria  normal  0.0469463  normal  0.0948206 
 
 
-
 
NC_009921  Franean1_4309  cobalamin B12-binding domain-containing protein  80.31 
 
 
133 aa  204  4e-52  Frankia sp. EAN1pec  Bacteria  normal  normal  0.734858 
 
 
-
 
NC_013525  Tter_1673  cobalamin B12-binding domain protein  59.02 
 
 
153 aa  140  4e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008609  Ppro_0388  cobalamin B12-binding domain-containing protein  60.48 
 
 
134 aa  141  4e-33  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000031654  n/a   
 
 
-
 
NC_010003  Pmob_0550  cobalamin B12-binding domain-containing protein  57.14 
 
 
133 aa  140  5e-33  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_1432  methylmalonyl-CoA mutase  57.38 
 
 
140 aa  140  7e-33  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.329321 
 
 
-
 
NC_007760  Adeh_1832  methylmalonyl-CoA mutase  58.2 
 
 
140 aa  139  9.999999999999999e-33  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.436511  n/a   
 
 
-
 
NC_013124  Afer_0318  cobalamin B12-binding domain protein  55.38 
 
 
162 aa  139  9.999999999999999e-33  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1854  cobalamin B12-binding domain-containing protein  54.76 
 
 
137 aa  139  1.9999999999999998e-32  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2028  cobalamin B12-binding domain protein  58.2 
 
 
140 aa  138  3e-32  Anaeromyxobacter sp. K  Bacteria  normal  0.655901  n/a   
 
 
-
 
NC_002939  GSU1578  B12-binding protein  59.5 
 
 
134 aa  137  3.9999999999999997e-32  Geobacter sulfurreducens PCA  Bacteria  normal  0.432317  n/a   
 
 
-
 
NC_013216  Dtox_1910  cobalamin B12-binding domain protein  56.2 
 
 
134 aa  137  3.9999999999999997e-32  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.374857  normal  0.0962097 
 
 
-
 
NC_011891  A2cp1_2098  cobalamin B12-binding domain protein  58.2 
 
 
140 aa  136  7.999999999999999e-32  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7994  cobalamin B12-binding domain protein  57.26 
 
 
135 aa  136  8.999999999999999e-32  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_1574  methylmalonyl-CoA mutase-like  59.5 
 
 
134 aa  135  2e-31  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000332572  normal  0.305791 
 
 
-
 
NC_014212  Mesil_1715  cobalamin B12-binding domain protein  61.54 
 
 
139 aa  135  2e-31  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1242  methylmalonyl-CoA mutase  56.91 
 
 
135 aa  134  3.0000000000000003e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.00778509 
 
 
-
 
NC_012918  GM21_1548  cobalamin B12-binding domain protein  58.68 
 
 
134 aa  134  4e-31  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000166361 
 
 
-
 
NC_009483  Gura_2026  cobalamin B12-binding domain-containing protein  59.5 
 
 
134 aa  134  6.0000000000000005e-31  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000113125  n/a   
 
 
-
 
NC_013926  Aboo_1359  cobalamin B12-binding domain protein  53.12 
 
 
128 aa  133  7.000000000000001e-31  Aciduliprofundum boonei T469  Archaea  hitchhiker  0.000000000160657  n/a   
 
 
-
 
NC_011146  Gbem_2691  cobalamin B12-binding domain protein  58.68 
 
 
134 aa  133  9e-31  Geobacter bemidjiensis Bem  Bacteria  normal  0.0118523  n/a   
 
 
-
 
NC_009718  Fnod_1322  cobalamin B12-binding domain-containing protein  51.59 
 
 
136 aa  133  9.999999999999999e-31  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_4240  cobalamin B12-binding domain protein  52.07 
 
 
139 aa  132  9.999999999999999e-31  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_0582  cobalamin B12-binding domain-containing protein  54.47 
 
 
133 aa  132  9.999999999999999e-31  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3482  cobalamin B12-binding domain-containing protein  56.2 
 
 
134 aa  132  1.9999999999999998e-30  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_0289  cobalamin B12-binding domain protein  51.91 
 
 
140 aa  132  1.9999999999999998e-30  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1989  cobalamin B12-binding domain-containing protein  55.74 
 
 
139 aa  131  3e-30  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
CP001800  Ssol_0081  cobalamin B12-binding domain protein  51.22 
 
 
141 aa  131  3.9999999999999996e-30  Sulfolobus solfataricus 98/2  Archaea  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2024  cobalamin B12-binding domain-containing protein  58.2 
 
 
134 aa  130  3.9999999999999996e-30  Roseiflexus sp. RS-1  Bacteria  normal  decreased coverage  0.000794891 
 
 
-
 
NC_013946  Mrub_1574  cobalamin B12-binding domain-containing protein  57.94 
 
 
137 aa  130  5e-30  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.0630027 
 
 
-
 
NC_008578  Acel_0377  methylmalonyl-CoA mutase-like  57.38 
 
 
158 aa  130  5e-30  Acidothermus cellulolyticus 11B  Bacteria  normal  0.99713  normal 
 
 
-
 
NC_009253  Dred_1769  cobalamin B12-binding domain-containing protein  54.55 
 
 
134 aa  130  7.999999999999999e-30  Desulfotomaculum reducens MI-1  Bacteria  decreased coverage  0.00734137  n/a   
 
 
-
 
NC_011830  Dhaf_2692  cobalamin B12-binding domain protein  50.39 
 
 
140 aa  129  9e-30  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2369  methylmalonyl-CoA mutase-like protein  54.47 
 
 
133 aa  129  1.0000000000000001e-29  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.308524  n/a   
 
 
-
 
NC_009380  Strop_3814  cobalamin B12-binding domain-containing protein  57.02 
 
 
134 aa  127  4.0000000000000003e-29  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009440  Msed_2055  cobalamin B12-binding domain-containing protein  52.85 
 
 
155 aa  127  6e-29  Metallosphaera sedula DSM 5348  Archaea  normal  normal 
 
 
-
 
NC_014210  Ndas_0059  cobalamin B12-binding domain protein  54.47 
 
 
136 aa  127  6e-29  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  hitchhiker  0.000107152 
 
 
-
 
NC_010718  Nther_1487  cobalamin B12-binding domain protein  50.77 
 
 
135 aa  126  8.000000000000001e-29  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.40083  normal  0.12756 
 
 
-
 
NC_009953  Sare_4204  cobalamin B12-binding domain-containing protein  57.26 
 
 
134 aa  126  1.0000000000000001e-28  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00605014 
 
 
-
 
NC_009972  Haur_3987  cobalamin B12-binding domain-containing protein  54.69 
 
 
137 aa  126  1.0000000000000001e-28  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0195294  n/a   
 
 
-
 
NC_013743  Htur_0900  cobalamin B12-binding domain protein  52.42 
 
 
138 aa  125  2.0000000000000002e-28  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_009767  Rcas_2998  cobalamin B12-binding domain-containing protein  54.76 
 
 
134 aa  124  3e-28  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.651513  normal  0.0337584 
 
 
-
 
NC_013922  Nmag_2472  cobalamin B12-binding domain protein  52.42 
 
 
152 aa  124  4.0000000000000003e-28  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_008025  Dgeo_1541  methylmalonyl-CoA mutase, alpha subunit  54.92 
 
 
151 aa  124  5e-28  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0770461  normal 
 
 
-
 
NC_013132  Cpin_0241  cobalamin B12-binding domain protein  53.45 
 
 
139 aa  122  1e-27  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_3774  cobalamin B12-binding domain protein  51.28 
 
 
157 aa  122  2e-27  Haliangium ochraceum DSM 14365  Bacteria  normal  0.137195  normal  0.13274 
 
 
-
 
NC_008699  Noca_3591  cobalamin B12-binding domain-containing protein  56.9 
 
 
143 aa  122  2e-27  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013202  Hmuk_2805  cobalamin B12-binding domain protein  50.82 
 
 
142 aa  121  3e-27  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.069341  normal 
 
 
-
 
NC_012029  Hlac_0510  cobalamin B12-binding domain protein  48.85 
 
 
139 aa  120  4e-27  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  0.736031  normal  0.90311 
 
 
-
 
NC_011831  Cagg_0587  cobalamin B12-binding domain protein  55.28 
 
 
135 aa  120  4e-27  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.901029 
 
 
-
 
NC_009921  Franean1_1034  methylmalonyl-CoA mutase, large subunit  52.07 
 
 
666 aa  120  7e-27  Frankia sp. EAN1pec  Bacteria  normal  0.488774  normal  0.762762 
 
 
-
 
NC_008554  Sfum_0457  cobalamin B12-binding domain-containing protein  49.59 
 
 
133 aa  119  9.999999999999999e-27  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.364165 
 
 
-
 
NC_013739  Cwoe_4641  cobalamin B12-binding domain protein  57.02 
 
 
143 aa  119  9.999999999999999e-27  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.123677 
 
 
-
 
NC_013744  Htur_3836  cobalamin B12-binding domain protein  49.19 
 
 
138 aa  118  1.9999999999999998e-26  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.692162  n/a   
 
 
-
 
NC_013744  Htur_4360  cobalamin B12-binding domain protein  50 
 
 
138 aa  119  1.9999999999999998e-26  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.36975  n/a   
 
 
-
 
NC_013947  Snas_6220  cobalamin B12-binding domain-containing protein  56.56 
 
 
134 aa  119  1.9999999999999998e-26  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_4003  methylmalonyl-CoA mutase, large subunit  54.24 
 
 
685 aa  117  3.9999999999999996e-26  Salinispora arenicola CNS-205  Bacteria  normal  0.446619  hitchhiker  0.000372138 
 
 
-
 
NC_008699  Noca_1772  methylmalonyl-CoA mutase  57.01 
 
 
680 aa  117  4.9999999999999996e-26  Nocardioides sp. JS614  Bacteria  normal  0.292142  n/a   
 
 
-
 
NC_009621  Smed_5088  cobalamin B12-binding domain-containing protein  53.64 
 
 
153 aa  116  9e-26  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4193  methylmalonyl-CoA mutase, large subunit  51.61 
 
 
670 aa  115  1.9999999999999998e-25  Conexibacter woesei DSM 14684  Bacteria  normal  0.669168  normal  0.90036 
 
 
-
 
NC_013235  Namu_1263  cobalamin B12-binding domain protein  57.26 
 
 
149 aa  114  3.9999999999999997e-25  Nakamurella multipartita DSM 44233  Bacteria  normal  0.728671  normal  0.8637 
 
 
-
 
NC_009380  Strop_3621  methylmalonyl-CoA mutase, large subunit  53.17 
 
 
668 aa  112  1.0000000000000001e-24  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_2169  methylmalonyl-CoA mutase  49.59 
 
 
692 aa  109  1.0000000000000001e-23  Frankia sp. CcI3  Bacteria  normal  0.485789  normal  0.751366 
 
 
-
 
NC_009720  Xaut_1197  methylmalonyl-CoA mutase, large subunit  45.8 
 
 
657 aa  107  4.0000000000000004e-23  Xanthobacter autotrophicus Py2  Bacteria  normal  0.282186  normal 
 
 
-
 
NC_013124  Afer_0223  methylmalonyl-CoA mutase, large subunit  55.37 
 
 
647 aa  107  7.000000000000001e-23  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.784456  n/a   
 
 
-
 
NC_014165  Tbis_1920  methylmalonyl-CoA mutase large subunit  46.56 
 
 
720 aa  106  8.000000000000001e-23  Thermobispora bispora DSM 43833  Bacteria  normal  0.0552222  normal  0.617547 
 
 
-
 
NC_013131  Caci_1226  methylmalonyl-CoA mutase, large subunit  55.14 
 
 
672 aa  106  9.000000000000001e-23  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.6728  normal  0.0673448 
 
 
-
 
NC_009719  Plav_1625  methylmalonyl-CoA mutase, large subunit  47.93 
 
 
667 aa  105  1e-22  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A3062  methylmalonyl-CoA mutase  52.34 
 
 
671 aa  105  2e-22  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_1173  methylmalonyl-CoA mutase, large subunit  47.15 
 
 
1106 aa  105  2e-22  Chlorobium phaeobacteroides BS1  Bacteria  normal  decreased coverage  0.00593374 
 
 
-
 
NC_010085  Nmar_0958  cobalamin B12-binding domain-containing protein  47.06 
 
 
140 aa  105  2e-22  Nitrosopumilus maritimus SCM1  Archaea  n/a    hitchhiker  0.0044288 
 
 
-
 
NC_009050  Rsph17029_3654  cobalamin B12-binding domain-containing protein  49.11 
 
 
135 aa  103  9e-22  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.136466 
 
 
-
 
NC_008687  Pden_3875  methylmalonyl-CoA mutase, large subunit  43.41 
 
 
688 aa  102  1e-21  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_2128  cobalamin B12-binding domain-containing protein  45.86 
 
 
172 aa  102  2e-21  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008826  Mpe_B0538  methylmalonyl-CoA mutase C-terminal domain-containing protein  42.52 
 
 
136 aa  102  2e-21  Methylibium petroleiphilum PM1  Bacteria  normal  decreased coverage  0.000893241 
 
 
-
 
NC_010814  Glov_3260  methylmalonyl-CoA mutase, large subunit  42.19 
 
 
713 aa  101  3e-21  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0726  methylmalonyl-CoA mutase  44.17 
 
 
712 aa  101  3e-21  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.999011  normal 
 
 
-
 
NC_013595  Sros_3188  Methylmalonyl-CoA mutase  45.76 
 
 
725 aa  100  4e-21  Streptosporangium roseum DSM 43021  Bacteria  normal  0.36577  normal  0.670701 
 
 
-
 
NC_009717  Xaut_5018  cobalamin B12-binding domain-containing protein  48.6 
 
 
135 aa  100  7e-21  Xanthobacter autotrophicus Py2  Bacteria  normal  0.622944  normal 
 
 
-
 
NC_004310  BR1190  methylmalonyl-CoA mutase  44.8 
 
 
712 aa  100  8e-21  Brucella suis 1330  Bacteria  normal  0.942727  n/a   
 
 
-
 
NC_008043  TM1040_3106  methylmalonyl-CoA mutase  41.32 
 
 
661 aa  100  8e-21  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_2105  methylmalonyl-CoA mutase, large subunit  46.67 
 
 
745 aa  100  8e-21  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_2855  methylmalonyl-CoA mutase  42.06 
 
 
657 aa  100  9e-21  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_4213  methylmalonyl-CoA mutase  44.72 
 
 
714 aa  99.8  1e-20  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A3075  methylmalonyl-CoA mutase  44.72 
 
 
714 aa  99  2e-20  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5687  methylmalonyl-CoA mutase  44.8 
 
 
712 aa  99.4  2e-20  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1164  methylmalonyl-CoA mutase  46.09 
 
 
713 aa  99.4  2e-20  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.197015  n/a   
 
 
-
 
NC_009667  Oant_2001  methylmalonyl-CoA mutase  41.73 
 
 
714 aa  97.8  4e-20  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_2300  methylmalonyl-CoA mutase  42.19 
 
 
709 aa  97.8  5e-20  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_02748  methylmalonyl-CoA mutase  43.9 
 
 
714 aa  97.1  7e-20  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0776  methylmalonyl-CoA mutase, large subunit  43.9 
 
 
714 aa  97.1  7e-20  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_02711  hypothetical protein  43.9 
 
 
714 aa  97.1  7e-20  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_3244  methylmalonyl-CoA mutase  43.9 
 
 
714 aa  97.1  7e-20  Escherichia coli E24377A  Bacteria  normal  0.98625  n/a   
 
 
-
 
NC_010468  EcolC_0793  methylmalonyl-CoA mutase  43.9 
 
 
714 aa  97.1  7e-20  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_3053  methylmalonyl-CoA mutase  43.9 
 
 
714 aa  97.1  7e-20  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_0014  methylmalonyl-CoA mutase  43.48 
 
 
711 aa  96.7  8e-20  Flavobacterium johnsoniae UW101  Bacteria  normal  0.185174  n/a   
 
 
-
 
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