| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3106 |
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| Symbol | |
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| ID | 4075553 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 76029 |
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| End bp | 78014 |
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| Gene Length | 1986 bp |
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| Protein Length | 661 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638004608 |
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| Product | methylmalonyl-CoA mutase |
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| Protein accession | YP_611342 |
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| Protein GI | 99078084 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit
[COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCTCG CGCAGAAAGA TCGCTCCGAA GCCCCCAATC GGGATCGGCC CTGGCTGATC
CGCACCTATG CGGGCCATTC CACCGCCGCG GCGTCCAACG CGCTTTATCG CGCGAATCTC
GCCAAGGGGC AGACCGGGCT CTCGGTGGCT TTTGATCTGC CGACTCAGAC CGGCTACGAC
AGCGATCACG TCCTAGCGCG CGGCGAAGTG GGCAAGGTTG GCGTGCCGGT GGGGCATCTG
GGCGACATGC GGGCGCTGTT TGATCAGATC CCGCTCGAAC AGATGAACAC ATCGATGACC
ATCAACGCCA CCGCGCCCTG GCTCCTGAGC CTCTATATCG CGGTGGCCGA AGAACAGGGC
GCAGACGTAT CAAAACTTCA GGGCACGGTG CAAAACGACC TGATCAAGGA ATACCTCAGC
CGCGGCACCT ATATCTGCCC TCCGGCCCCG AGCCTCAAGA TGATCGCGGA TGTGGCGGAA
TACTGCTATC AGAATGTTCC CAAGTGGAAC CCGATGAACG TCTGTTCCTA CCACCTGCAA
GAAGCGGGCG CGACGCCCGA GCAGGAGCTT GCGTTTGCTC TGGCCACCGC GCAGGCGGTG
CTGGACGAGC TGAAACCGCG CGTGCCCGCC GAGGACTTCC CGGCGATGGT CGGACGCATC
TCCTTCTTTG TGAACGCAGG CATCCGCTTT GTGACAGAGA TGTGCAAGAT GCGCGCCTTT
GTCGACCTCT GGGACGAGAT CTGCCGGACC CGCTATAGCG TCGAGGACCC CAAATTCCGC
CGCTTTCGCT ATGGCGTGCA GGTGAACTCG CTGGGGCTGA CCGAGCAGCA GCCGGAAAAC
AACGTCTATC GCATCCTGAT CGAAATGCTC GCCGTGACGC TTTCAAAAAA GGCCCGCGCC
CGTGCGGTGC AGCTTCCGGC CTGGAACGAG GCGCTTGGCC TGCCGCGCCC ATGGGATCAG
CAATGGTCGA TGCGGATGCA ACAGATCCTC GCCTATGAGA CCGATCTGTT GGAATACGGC
GACCTCTTTG ATGGCAACCC GGTGGTGGAC GCCAAGGTTG AGGTGTTGAA AGAGGGCGCG
CGCGCCGAGC TTGCCACGCT GGAAGGTATG GGCGGCGCTG TGGCCTCCAT TGAATATATG
AAGTCCCGCC TCGTGGACTC CAACGCCGAA CGTCTCAATC GCATCGAGGC GGGCGAGACC
GTGGTGGTCG GCGTCAACAA ATGGACCGAG GGCGAGCCCT CGCCGCTTCA GACCGAGGAT
GGCGGCATCA TGACCGTTGA TCCCGCCGTC GAGGCCGAGC AGATCGCCCG GCTCAATGCA
TGGCGCGCCA GCCGCGATGA CGCGGCGGTG GCCGCTGCGC TTGAGGGTCT GCGCGCCGCC
GCACGCGATG GCACCAATAT CATGCCAGCC TCAATCAAGG CCGCCCGCGC AGGCGTCACC
ACCGGGGAAT GGGCCGAAGA GATGCGCAAG GCCTACGGCA CCTATCGTGG TCCCACTGGC
GTCTCGGCCT CGATGTCCAA CAAGACAGAT GGGCTGGACG ATCTGCGCGA GGCGGTCAAT
GCGGCGTCCG ACCAGCTGGG GCGGCGGCTC AAGTTTGTGG TGGGCAAGCC CGGACTGGAT
GGCCATTCCA ACGGCGCCGA GCAGATTGCC TTTCGCGCCC GCGACTGTGG CATGGACATC
ACCTATGACG GCATCCGCCT CACCCCTCAG GAACTGGTCC AAAGCGCGCA GCGCGACTCG
GCCCATGTGA TCGGTCTCTC CATTCTCTCG GGTAGTCATT TGCCATTGGT CGAAGATACA
TTGGCCCAGT TGCGCGCCGC CGGATTGGAA AATGTCCCTG TTGTTGTGGG GGGAATTATC
CCTGAGGAAG ACGCAAATAT GCTTCTCGAT ATGGGCGTCT CCAAGGTCTA CACACCAAAG
AATTTTGAGT TGAATTCAAT CATGAAAGAT ATCGTCGAGC TCGCAAAAAC AAACACATCA
GTTTAA
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| Protein sequence | MSLAQKDRSE APNRDRPWLI RTYAGHSTAA ASNALYRANL AKGQTGLSVA FDLPTQTGYD
SDHVLARGEV GKVGVPVGHL GDMRALFDQI PLEQMNTSMT INATAPWLLS LYIAVAEEQG
ADVSKLQGTV QNDLIKEYLS RGTYICPPAP SLKMIADVAE YCYQNVPKWN PMNVCSYHLQ
EAGATPEQEL AFALATAQAV LDELKPRVPA EDFPAMVGRI SFFVNAGIRF VTEMCKMRAF
VDLWDEICRT RYSVEDPKFR RFRYGVQVNS LGLTEQQPEN NVYRILIEML AVTLSKKARA
RAVQLPAWNE ALGLPRPWDQ QWSMRMQQIL AYETDLLEYG DLFDGNPVVD AKVEVLKEGA
RAELATLEGM GGAVASIEYM KSRLVDSNAE RLNRIEAGET VVVGVNKWTE GEPSPLQTED
GGIMTVDPAV EAEQIARLNA WRASRDDAAV AAALEGLRAA ARDGTNIMPA SIKAARAGVT
TGEWAEEMRK AYGTYRGPTG VSASMSNKTD GLDDLREAVN AASDQLGRRL KFVVGKPGLD
GHSNGAEQIA FRARDCGMDI TYDGIRLTPQ ELVQSAQRDS AHVIGLSILS GSHLPLVEDT
LAQLRAAGLE NVPVVVGGII PEEDANMLLD MGVSKVYTPK NFELNSIMKD IVELAKTNTS
V
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