More than 300 homologs were found in PanDaTox collection
for query gene Francci3_2169 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009380  Strop_3621  methylmalonyl-CoA mutase, large subunit  66.67 
 
 		 668 aa  853    Salinispora tropica CNB-440  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013131  Caci_1226  methylmalonyl-CoA mutase, large subunit  69.71 
 
 		 672 aa  928    Catenulispora acidiphila DSM 44928  Bacteria  normal  0.6728  normal  0.0673448 
 
 
-
 
NC_007493  RSP_0961  methylmalonyl-CoA mutase  60.89 
 
 		 652 aa  769    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007643  Rru_A3062  methylmalonyl-CoA mutase  63.57 
 
 		 671 aa  853    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_007777  Francci3_2169  methylmalonyl-CoA mutase  100 
 
 		 692 aa  1382    Frankia sp. CcI3  Bacteria  normal  0.485789  normal  0.751366 
 
 
-
 
NC_007802  Jann_0797  methylmalonyl-CoA mutase  60 
 
 		 654 aa  787    Jannaschia sp. CCS1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009720  Xaut_1197  methylmalonyl-CoA mutase, large subunit  62.94 
 
 		 657 aa  835    Xanthobacter autotrophicus Py2  Bacteria  normal  0.282186  normal  1 
 
 
-
 
NC_009952  Dshi_2855  methylmalonyl-CoA mutase  61.74 
 
 		 657 aa  815    Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013757  Gobs_4128  methylmalonyl-CoA mutase, large subunit  72.18 
 
 		 667 aa  944    Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_010505  Mrad2831_1106  methylmalonyl-CoA mutase, large subunit  62.31 
 
 		 680 aa  818    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008043  TM1040_3106  methylmalonyl-CoA mutase  60.5 
 
 		 661 aa  825    Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_0038  methylmalonyl-CoA mutase, large subunit  63.13 
 
 		 690 aa  837    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.579469  n/a   
 
 
-
 
NC_010725  Mpop_0366  methylmalonyl-CoA mutase, large subunit  62.64 
 
 		 688 aa  840    Methylobacterium populi BJ001  Bacteria  normal  0.560359  normal  1 
 
 
-
 
NC_010511  M446_0036  methylmalonyl-CoA mutase, large subunit  63.57 
 
 		 675 aa  836    Methylobacterium sp. 4-46  Bacteria  normal  0.0637775  decreased coverage  0.00272797 
 
 
-
 
NC_008687  Pden_3875  methylmalonyl-CoA mutase, large subunit  61.32 
 
 		 688 aa  786    Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008699  Noca_1772  methylmalonyl-CoA mutase  69.31 
 
 		 680 aa  936    Nocardioides sp. JS614  Bacteria  normal  0.292142  n/a   
 
 
-
 
NC_009953  Sare_4003  methylmalonyl-CoA mutase, large subunit  67.3 
 
 		 685 aa  853    Salinispora arenicola CNS-205  Bacteria  normal  0.446619  hitchhiker  0.000372138 
 
 
-
 
NC_009719  Plav_1625  methylmalonyl-CoA mutase, large subunit  61.15 
 
 		 667 aa  810    Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009921  Franean1_1034  methylmalonyl-CoA mutase, large subunit  79.82 
 
 		 666 aa  1083    Frankia sp. EAN1pec  Bacteria  normal  0.488774  normal  0.762762 
 
 
-
 
NC_010338  Caul_0836  methylmalonyl-CoA mutase, large subunit  60.36 
 
 		 662 aa  800    Caulobacter sp. K31  Bacteria  normal  0.733808  normal  0.66979 
 
 
-
 
NC_013124  Afer_0223  methylmalonyl-CoA mutase, large subunit  58.5 
 
 		 647 aa  706    Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.784456  n/a   
 
 
-
 
NC_013739  Cwoe_4193  methylmalonyl-CoA mutase, large subunit  65.35 
 
 		 670 aa  853    Conexibacter woesei DSM 14684  Bacteria  normal  0.669168  normal  0.90036 
 
 
-
 
NC_009049  Rsph17029_2621  methylmalonyl-CoA mutase, large subunit  60.89 
 
 		 652 aa  768    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009428  Rsph17025_3008  methylmalonyl-CoA mutase, large subunit  61.04 
 
 		 652 aa  781    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.842553  normal  0.248307 
 
 
-
 
NC_010172  Mext_0290  methylmalonyl-CoA mutase, large subunit  62.36 
 
 		 688 aa  837    Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.515512 
 
 
-
 
NC_011757  Mchl_0334  methylmalonyl-CoA mutase, large subunit  62.5 
 
 		 688 aa  838    Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009943  Dole_0079  methylmalonyl-CoA mutase  39.51 
 
 		 706 aa  443  1e-123  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.373309  n/a   
 
 
-
 
NC_007493  RSP_2192  methylmalonyl-CoA mutase  39.12 
 
 		 709 aa  426  1e-118  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.172259  n/a   
 
 
-
 
NC_009049  Rsph17029_0867  methylmalonyl-CoA mutase  39.26 
 
 		 709 aa  427  1e-118  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.134958  normal  1 
 
 
-
 
NC_007802  Jann_3367  methylmalonyl-CoA mutase  39.52 
 
 		 709 aa  423  1e-117  Jannaschia sp. CCS1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008025  Dgeo_1320  methylmalonyl-CoA mutase  38.46 
 
 		 722 aa  424  1e-117  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007298  Daro_4006  methylmalonyl-CoA mutase  36.97 
 
 		 716 aa  421  1e-116  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009428  Rsph17025_2300  methylmalonyl-CoA mutase  39.56 
 
 		 709 aa  421  1e-116  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011992  Dtpsy_1849  methylmalonyl-CoA mutase  37.56 
 
 		 720 aa  420  1e-116  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_011059  Paes_0875  methylmalonyl-CoA mutase, large subunit  36.86 
 
 		 1081 aa  416  9.999999999999999e-116  Prosthecochloris aestuarii DSM 271  Bacteria  normal  1  normal  0.036821 
 
 
-
 
NC_008044  TM1040_1865  methylmalonyl-CoA mutase  39.88 
 
 		 661 aa  417  9.999999999999999e-116  Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009952  Dshi_0726  methylmalonyl-CoA mutase  39.06 
 
 		 712 aa  416  9.999999999999999e-116  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.999011  normal  1 
 
 
-
 
NC_010814  Glov_3260  methylmalonyl-CoA mutase, large subunit  38.14 
 
 		 713 aa  418  9.999999999999999e-116  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_013169  Ksed_22170  methylmalonyl-CoA mutase  38.79 
 
 		 754 aa  416  9.999999999999999e-116  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.366718  normal  0.398515 
 
 
-
 
NC_008782  Ajs_2040  methylmalonyl-CoA mutase  37.25 
 
 		 720 aa  417  9.999999999999999e-116  Acidovorax sp. JS42  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009511  Swit_2891  methylmalonyl-CoA mutase  38.36 
 
 		 716 aa  413  1e-114  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  0.17991 
 
 
-
 
NC_009719  Plav_1702  methylmalonyl-CoA mutase  38.58 
 
 		 718 aa  414  1e-114  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  0.0321557 
 
 
-
 
NC_014165  Tbis_1920  methylmalonyl-CoA mutase large subunit  38.48 
 
 		 720 aa  412  1e-114  Thermobispora bispora DSM 43833  Bacteria  normal  0.0552222  normal  0.617547 
 
 
-
 
NC_013595  Sros_3188  Methylmalonyl-CoA mutase  39.27 
 
 		 725 aa  414  1e-114  Streptosporangium roseum DSM 43021  Bacteria  normal  0.36577  normal  0.670701 
 
 
-
 
NC_007794  Saro_0811  methylmalonyl-CoA mutase  38.05 
 
 		 714 aa  414  1e-114  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.251875  n/a   
 
 
-
 
NC_008254  Meso_0856  methylmalonyl-CoA mutase  37.97 
 
 		 714 aa  413  1e-114  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_012791  Vapar_2127  methylmalonyl-CoA mutase  37.19 
 
 		 720 aa  409  1e-113  Variovorax paradoxus S110  Bacteria  normal  0.063815  n/a   
 
 
-
 
NC_008687  Pden_3681  methylmalonyl-CoA mutase  38.42 
 
 		 714 aa  410  1e-113  Paracoccus denitrificans PD1222  Bacteria  normal  0.542374  normal  1 
 
 
-
 
NC_008752  Aave_2510  methylmalonyl-CoA mutase  37.25 
 
 		 722 aa  409  1e-113  Acidovorax citrulli AAC00-1  Bacteria  normal  1  normal  0.178476 
 
 
-
 
NC_008786  Veis_3398  methylmalonyl-CoA mutase  37.57 
 
 		 731 aa  410  1e-113  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.526303  normal  1 
 
 
-
 
CP001509  ECD_02748  methylmalonyl-CoA mutase  37.37 
 
 		 714 aa  406  1.0000000000000001e-112  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
NC_010468  EcolC_0793  methylmalonyl-CoA mutase  37.37 
 
 		 714 aa  406  1.0000000000000001e-112  Escherichia coli ATCC 8739  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013159  Svir_05680  methylmalonyl-CoA mutase  38.73 
 
 		 726 aa  407  1.0000000000000001e-112  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009801  EcE24377A_3244  methylmalonyl-CoA mutase  37.37 
 
 		 714 aa  406  1.0000000000000001e-112  Escherichia coli E24377A  Bacteria  normal  0.98625  n/a   
 
 
-
 
NC_012892  B21_02711  hypothetical protein  37.37 
 
 		 714 aa  406  1.0000000000000001e-112  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
NC_011353  ECH74115_4213  methylmalonyl-CoA mutase  37.37 
 
 		 714 aa  409  1.0000000000000001e-112  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009675  Anae109_0281  methylmalonyl-CoA mutase, large subunit  43.27 
 
 		 549 aa  406  1.0000000000000001e-112  Anaeromyxobacter sp. Fw109-5  Bacteria  decreased coverage  0.000219849  normal  0.200381 
 
 
-
 
NC_013730  Slin_6640  methylmalonyl-CoA mutase, large subunit  36.93 
 
 		 724 aa  407  1.0000000000000001e-112  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  0.70273 
 
 
-
 
NC_009800  EcHS_A3075  methylmalonyl-CoA mutase  37.52 
 
 		 714 aa  408  1.0000000000000001e-112  Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
NC_009667  Oant_2001  methylmalonyl-CoA mutase  37.44 
 
 		 714 aa  408  1.0000000000000001e-112  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
CP001637  EcDH1_0776  methylmalonyl-CoA mutase, large subunit  37.23 
 
 		 714 aa  404  1e-111  Escherichia coli DH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_004310  BR1190  methylmalonyl-CoA mutase  37.59 
 
 		 712 aa  403  1e-111  Brucella suis 1330  Bacteria  normal  0.942727  n/a   
 
 
-
 
NC_007512  Plut_1292  methylmalonyl-CoA mutase  37.12 
 
 		 714 aa  404  1e-111  Chlorobium luteolum DSM 273  Bacteria  normal  1  normal  0.816153 
 
 
-
 
NC_011371  Rleg2_6511  methylmalonyl-CoA mutase  38.24 
 
 		 712 aa  405  1e-111  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010498  EcSMS35_3053  methylmalonyl-CoA mutase  37.37 
 
 		 714 aa  405  1e-111  Escherichia coli SMS-3-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010831  Cphamn1_1173  methylmalonyl-CoA mutase, large subunit  36.64 
 
 		 1106 aa  404  1e-111  Chlorobium phaeobacteroides BS1  Bacteria  normal  1  decreased coverage  0.00593374 
 
 
-
 
NC_010320  Teth514_1855  methylmalonyl-CoA mutase, large subunit  42.64 
 
 		 560 aa  405  1e-111  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_013441  Gbro_2420  methylmalonyl-CoA mutase, large subunit  38.35 
 
 		 763 aa  403  1e-111  Gordonia bronchialis DSM 43247  Bacteria  normal  1  n/a   
 
 
-
 
NC_002950  PG1657  methylmalonyl-CoA mutase  37.03 
 
 		 715 aa  400  9.999999999999999e-111  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.387473 
 
 
-
 
NC_007514  Cag_1223  methylmalonyl-CoA mutase  37.07 
 
 		 712 aa  402  9.999999999999999e-111  Chlorobium chlorochromatii CaD3  Bacteria  normal  1  n/a   
 
 
-
 
NC_009718  Fnod_1752  methylmalonyl-CoA mutase, large subunit  41.83 
 
 		 554 aa  401  9.999999999999999e-111  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013037  Dfer_5804  methylmalonyl-CoA mutase  36.61 
 
 		 972 aa  399  9.999999999999999e-111  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.256305  normal  0.17905 
 
 
-
 
NC_010002  Daci_3753  methylmalonyl-CoA mutase  36.5 
 
 		 738 aa  402  9.999999999999999e-111  Delftia acidovorans SPH-1  Bacteria  normal  0.801598  normal  0.879758 
 
 
-
 
NC_014158  Tpau_2105  methylmalonyl-CoA mutase, large subunit  37.68 
 
 		 745 aa  400  9.999999999999999e-111  Tsukamurella paurometabola DSM 20162  Bacteria  normal  1  n/a   
 
 
-
 
NC_013757  Gobs_4373  methylmalonyl-CoA mutase, large subunit  38.45 
 
 		 735 aa  400  9.999999999999999e-111  Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_014230  CA2559_07125  methylmalonyl-CoA mutase  37.07 
 
 		 707 aa  400  9.999999999999999e-111  Croceibacter atlanticus HTCC2559  Bacteria  normal  1  n/a   
 
 
-
 
NC_008048  Sala_1221  methylmalonyl-CoA mutase  39.23 
 
 		 715 aa  400  9.999999999999999e-111  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.584735  normal  1 
 
 
-
 
NC_008148  Rxyl_1283  methylmalonyl-CoA mutase  45.14 
 
 		 531 aa  402  9.999999999999999e-111  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_013411  GYMC61_0279  methylmalonyl-CoA mutase  36.87 
 
 		 731 aa  401  9.999999999999999e-111  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013093  Amir_6418  methylmalonyl-CoA mutase  38.83 
 
 		 729 aa  400  9.999999999999999e-111  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_2383  methylmalonyl-CoA mutase  36.48 
 
 		 718 aa  400  9.999999999999999e-111  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010571  Oter_3304  methylmalonyl-CoA mutase, large subunit  37.37 
 
 		 719 aa  400  9.999999999999999e-111  Opitutus terrae PB90-1  Bacteria  decreased coverage  0.00679496  normal  0.683271 
 
 
-
 
NC_009485  BBta_3021  methylmalonyl-CoA mutase  37.16 
 
 		 718 aa  402  9.999999999999999e-111  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  0.954275 
 
 
-
 
NC_013947  Snas_0775  methylmalonyl-CoA mutase large subunit  45.45 
 
 		 526 aa  398  1e-109  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009565  TBFG_11523  methylmalonyl-CoA mutase  38 
 
 		 750 aa  398  1e-109  Mycobacterium tuberculosis F11  Bacteria  normal  1  normal  0.26728 
 
 
-
 
NC_007333  Tfu_2762  methylmalonyl-CoA mutase  38.48 
 
 		 740 aa  396  1e-109  Thermobifida fusca YX  Bacteria  normal  1  n/a   
 
 
-
 
NC_011370  Rleg2_6136  methylmalonyl-CoA mutase  38.97 
 
 		 717 aa  397  1e-109  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0179109  normal  0.120378 
 
 
-
 
NC_007778  RPB_3538  methylmalonyl-CoA mutase  36.99 
 
 		 736 aa  396  1e-109  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.162308  normal  0.256268 
 
 
-
 
NC_007908  Rfer_2805  methylmalonyl-CoA mutase  35.9 
 
 		 719 aa  397  1e-109  Rhodoferax ferrireducens T118  Bacteria  normal  0.147831  n/a   
 
 
-
 
NC_007964  Nham_2638  methylmalonyl-CoA mutase  36.71 
 
 		 720 aa  398  1e-109  Nitrobacter hamburgensis X14  Bacteria  normal  1  n/a   
 
 
-
 
NC_013510  Tcur_2505  methylmalonyl-CoA mutase, large subunit  38.51 
 
 		 736 aa  399  1e-109  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000422516  n/a   
 
 
-
 
NC_009441  Fjoh_0014  methylmalonyl-CoA mutase  36.1 
 
 		 711 aa  399  1e-109  Flavobacterium johnsoniae UW101  Bacteria  normal  0.185174  n/a   
 
 
-
 
NC_011060  Ppha_1167  methylmalonyl-CoA mutase  36.87 
 
 		 712 aa  396  1e-109  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.169366  n/a   
 
 
-
 
NC_008639  Cpha266_1164  methylmalonyl-CoA mutase  37.1 
 
 		 713 aa  396  1e-109  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.197015  n/a   
 
 
-
 
NC_008726  Mvan_2763  methylmalonyl-CoA mutase  38.45 
 
 		 751 aa  399  1e-109  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0863781  normal  0.728933 
 
 
-
 
NC_008825  Mpe_A1014  methylmalonyl-CoA mutase  36.8 
 
 		 719 aa  397  1e-109  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  0.856859 
 
 
-
 
NC_011662  Tmz1t_3486  methylmalonyl-CoA mutase  37.08 
 
 		 721 aa  399  1e-109  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_012793  GWCH70_2294  methylmalonyl-CoA mutase  36.14 
 
 		 731 aa  396  1e-109  Geobacillus sp. WCH70  Bacteria  normal  0.895743  n/a   
 
 
-
 
NC_009616  Tmel_1860  methylmalonyl-CoA mutase, large subunit  41.52 
 
 		 559 aa  394  1e-108  Thermosipho melanesiensis BI429  Bacteria  decreased coverage  0.0000937746  n/a   
 
 
-
 
NC_011004  Rpal_2039  methylmalonyl-CoA mutase  36.56 
 
 		 719 aa  393  1e-108  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
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