More than 300 homologs were found in PanDaTox collection
for query gene BBta_3021 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
CP001509  ECD_02748  methylmalonyl-CoA mutase  61.93 
 
 
714 aa  850    Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0776  methylmalonyl-CoA mutase, large subunit  61.79 
 
 
714 aa  849    Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6418  methylmalonyl-CoA mutase  75.14 
 
 
729 aa  1110    Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_4573  methylmalonyl-CoA mutase  80.03 
 
 
720 aa  1176    Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_4213  methylmalonyl-CoA mutase  61.49 
 
 
714 aa  845    Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_002950  PG1657  methylmalonyl-CoA mutase  65.06 
 
 
715 aa  935    Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.387473 
 
 
-
 
NC_014230  CA2559_07125  methylmalonyl-CoA mutase  68.48 
 
 
707 aa  974    Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR1190  methylmalonyl-CoA mutase  62.43 
 
 
712 aa  886    Brucella suis 1330  Bacteria  normal  0.942727  n/a   
 
 
-
 
NC_011370  Rleg2_6136  methylmalonyl-CoA mutase  60.95 
 
 
717 aa  836    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0179109  normal  0.120378 
 
 
-
 
NC_007298  Daro_4006  methylmalonyl-CoA mutase  63.23 
 
 
716 aa  933    Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_2294  methylmalonyl-CoA mutase  68.7 
 
 
731 aa  1014    Geobacillus sp. WCH70  Bacteria  normal  0.895743  n/a   
 
 
-
 
NC_007333  Tfu_2762  methylmalonyl-CoA mutase  73.04 
 
 
740 aa  1071    Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_11523  methylmalonyl-CoA mutase  73.83 
 
 
750 aa  1033    Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.26728 
 
 
-
 
NC_009667  Oant_2001  methylmalonyl-CoA mutase  62.88 
 
 
714 aa  887    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_2697  methylmalonyl-CoA mutase  64.52 
 
 
720 aa  919    Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.20812 
 
 
-
 
NC_007406  Nwi_2238  methylmalonyl-CoA mutase  86.41 
 
 
722 aa  1297    Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_5261  methylmalonyl-CoA mutase  79.36 
 
 
721 aa  1143    Methylobacterium chloromethanicum CM4  Bacteria  normal  0.145645  normal 
 
 
-
 
NC_010505  Mrad2831_1736  methylmalonyl-CoA mutase  78.09 
 
 
721 aa  1130    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_2192  methylmalonyl-CoA mutase  65.63 
 
 
709 aa  917    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.172259  n/a   
 
 
-
 
NC_007512  Plut_1292  methylmalonyl-CoA mutase  63.18 
 
 
714 aa  929    Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.816153 
 
 
-
 
NC_007514  Cag_1223  methylmalonyl-CoA mutase  62.41 
 
 
712 aa  918    Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4237  methylmalonyl-CoA mutase  61.16 
 
 
712 aa  838    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3872  methylmalonyl-CoA mutase  66.58 
 
 
740 aa  991    Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.231489  normal  0.125312 
 
 
-
 
NC_011666  Msil_3784  methylmalonyl-CoA mutase, large subunit  72.11 
 
 
736 aa  1033    Methylocella silvestris BL2  Bacteria  n/a    normal  0.362344 
 
 
-
 
NC_007643  Rru_A2479  methylmalonyl-CoA mutase  75.1 
 
 
732 aa  1140    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_2891  methylmalonyl-CoA mutase  61.79 
 
 
716 aa  870    Sphingomonas wittichii RW1  Bacteria  normal  normal  0.17991 
 
 
-
 
NC_010814  Glov_3260  methylmalonyl-CoA mutase, large subunit  66.37 
 
 
713 aa  950    Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_02711  hypothetical protein  61.93 
 
 
714 aa  850    Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1349  methylmalonyl-CoA mutase  67.68 
 
 
733 aa  983    Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0148615  unclonable  0.0000000469192 
 
 
-
 
NC_010002  Daci_3753  methylmalonyl-CoA mutase  63.58 
 
 
738 aa  897    Delftia acidovorans SPH-1  Bacteria  normal  0.801598  normal  0.879758 
 
 
-
 
NC_007777  Francci3_3005  methylmalonyl-CoA mutase  71.6 
 
 
754 aa  1040    Frankia sp. CcI3  Bacteria  normal  0.598546  normal  0.356991 
 
 
-
 
NC_010803  Clim_0868  methylmalonyl-CoA mutase  62.66 
 
 
715 aa  939    Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_05680  methylmalonyl-CoA mutase  74.38 
 
 
726 aa  1102    Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3538  methylmalonyl-CoA mutase  92.19 
 
 
736 aa  1352    Rhodopseudomonas palustris HaA2  Bacteria  normal  0.162308  normal  0.256268 
 
 
-
 
NC_007794  Saro_0811  methylmalonyl-CoA mutase  62.05 
 
 
714 aa  862    Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.251875  n/a   
 
 
-
 
NC_010338  Caul_3630  methylmalonyl-CoA mutase  74.97 
 
 
717 aa  1073    Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3367  methylmalonyl-CoA mutase  64.26 
 
 
709 aa  870    Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2805  methylmalonyl-CoA mutase  62.61 
 
 
719 aa  908    Rhodoferax ferrireducens T118  Bacteria  normal  0.147831  n/a   
 
 
-
 
NC_013169  Ksed_22170  methylmalonyl-CoA mutase  73.98 
 
 
754 aa  1056    Kytococcus sedentarius DSM 20547  Bacteria  normal  0.366718  normal  0.398515 
 
 
-
 
NC_007925  RPC_1760  methylmalonyl-CoA mutase  90.11 
 
 
718 aa  1339    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.226069 
 
 
-
 
NC_007948  Bpro_2161  methylmalonyl-CoA mutase  63.54 
 
 
723 aa  902    Polaromonas sp. JS666  Bacteria  normal  0.385791  normal  0.481947 
 
 
-
 
NC_009523  RoseRS_0545  methylmalonyl-CoA mutase  68.79 
 
 
740 aa  997    Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_1702  methylmalonyl-CoA mutase  68.91 
 
 
718 aa  949    Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.0321557 
 
 
-
 
NC_007958  RPD_1927  methylmalonyl-CoA mutase  90.26 
 
 
719 aa  1325    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.273596  normal  0.727114 
 
 
-
 
NC_007964  Nham_2638  methylmalonyl-CoA mutase  89.68 
 
 
720 aa  1320    Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0875  methylmalonyl-CoA mutase, large subunit  65.31 
 
 
1081 aa  943    Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.036821 
 
 
-
 
NC_011371  Rleg2_6511  methylmalonyl-CoA mutase  62.03 
 
 
712 aa  840    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_5337  methylmalonyl-CoA mutase  79.36 
 
 
721 aa  1142    Methylobacterium populi BJ001  Bacteria  normal  0.759699  normal 
 
 
-
 
NC_011988  Avi_5687  methylmalonyl-CoA mutase  63.36 
 
 
712 aa  862    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_1320  methylmalonyl-CoA mutase  67.35 
 
 
722 aa  954    Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_2127  methylmalonyl-CoA mutase  64.37 
 
 
720 aa  941    Variovorax paradoxus S110  Bacteria  normal  0.063815  n/a   
 
 
-
 
NC_008044  TM1040_1865  methylmalonyl-CoA mutase  66.16 
 
 
661 aa  862    Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1221  methylmalonyl-CoA mutase  60.64 
 
 
715 aa  826    Sphingopyxis alaskensis RB2256  Bacteria  normal  0.584735  normal 
 
 
-
 
NC_008146  Mmcs_3122  methylmalonyl-CoA mutase  73.65 
 
 
760 aa  1031    Mycobacterium sp. MCS  Bacteria  normal  0.203405  n/a   
 
 
-
 
NC_009485  BBta_3021  methylmalonyl-CoA mutase  100 
 
 
718 aa  1459    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.954275 
 
 
-
 
NC_013510  Tcur_2505  methylmalonyl-CoA mutase, large subunit  74.15 
 
 
736 aa  1082    Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000422516  n/a   
 
 
-
 
NC_013441  Gbro_2420  methylmalonyl-CoA mutase, large subunit  73.03 
 
 
763 aa  1038    Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_0279  methylmalonyl-CoA mutase  70.16 
 
 
731 aa  1023    Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008254  Meso_0856  methylmalonyl-CoA mutase  70.49 
 
 
714 aa  1037    Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_012852  Rleg_6098  methylmalonyl-CoA mutase  62.24 
 
 
712 aa  818    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.23929  normal  0.554736 
 
 
-
 
NC_008347  Mmar10_1119  methylmalonyl-CoA mutase  69.87 
 
 
716 aa  999    Maricaulis maris MCS10  Bacteria  normal  normal  0.262731 
 
 
-
 
NC_009379  Pnuc_0910  methylmalonyl-CoA mutase  62.88 
 
 
739 aa  893    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.736612  n/a   
 
 
-
 
NC_011992  Dtpsy_1849  methylmalonyl-CoA mutase  64.61 
 
 
720 aa  929    Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0388  methylmalonyl-CoA mutase  64.06 
 
 
714 aa  889    Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2039  methylmalonyl-CoA mutase  90.82 
 
 
719 aa  1350    Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_3486  methylmalonyl-CoA mutase  65.3 
 
 
721 aa  924    Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1284  methylmalonyl-CoA mutase  65.28 
 
 
723 aa  976    Pelobacter propionicus DSM 2379  Bacteria  normal  0.811968  n/a   
 
 
-
 
NC_009720  Xaut_4731  methylmalonyl-CoA mutase  80.95 
 
 
718 aa  1172    Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.38651 
 
 
-
 
NC_008639  Cpha266_1164  methylmalonyl-CoA mutase  61.55 
 
 
713 aa  902    Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.197015  n/a   
 
 
-
 
NC_009428  Rsph17025_2300  methylmalonyl-CoA mutase  65.19 
 
 
709 aa  893    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_3681  methylmalonyl-CoA mutase  65.55 
 
 
714 aa  903    Paracoccus denitrificans PD1222  Bacteria  normal  0.542374  normal 
 
 
-
 
NC_009921  Franean1_1944  methylmalonyl-CoA mutase  73.11 
 
 
740 aa  1055    Frankia sp. EAN1pec  Bacteria  normal  normal  0.132442 
 
 
-
 
NC_013235  Namu_5166  methylmalonyl-CoA mutase  72.61 
 
 
724 aa  1053    Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0726  methylmalonyl-CoA mutase  64.83 
 
 
712 aa  902    Dinoroseobacter shibae DFL 12  Bacteria  normal  0.999011  normal 
 
 
-
 
NC_010468  EcolC_0793  methylmalonyl-CoA mutase  61.93 
 
 
714 aa  850    Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_3042  methylmalonyl-CoA mutase  79.47 
 
 
720 aa  1163    Methylobacterium sp. 4-46  Bacteria  normal  normal  0.057217 
 
 
-
 
NC_008699  Noca_3544  methylmalonyl-CoA mutase  74.64 
 
 
720 aa  1028    Nocardioides sp. JS614  Bacteria  normal  0.143219  n/a   
 
 
-
 
NC_010831  Cphamn1_1173  methylmalonyl-CoA mutase, large subunit  63.78 
 
 
1106 aa  913    Chlorobium phaeobacteroides BS1  Bacteria  normal  decreased coverage  0.00593374 
 
 
-
 
NC_008705  Mkms_3183  methylmalonyl-CoA mutase  73.65 
 
 
760 aa  1031    Mycobacterium sp. KMS  Bacteria  normal  normal  0.0724467 
 
 
-
 
NC_009441  Fjoh_0014  methylmalonyl-CoA mutase  66.37 
 
 
711 aa  960    Flavobacterium johnsoniae UW101  Bacteria  normal  0.185174  n/a   
 
 
-
 
NC_011060  Ppha_1167  methylmalonyl-CoA mutase  62.87 
 
 
712 aa  925    Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.169366  n/a   
 
 
-
 
NC_008726  Mvan_2763  methylmalonyl-CoA mutase  75 
 
 
751 aa  1054    Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0863781  normal  0.728933 
 
 
-
 
NC_013037  Dfer_5804  methylmalonyl-CoA mutase  62.43 
 
 
972 aa  904    Dyadobacter fermentans DSM 18053  Bacteria  normal  0.256305  normal  0.17905 
 
 
-
 
NC_008752  Aave_2510  methylmalonyl-CoA mutase  64.38 
 
 
722 aa  924    Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.178476 
 
 
-
 
NC_008781  Pnap_2383  methylmalonyl-CoA mutase  62.63 
 
 
718 aa  909    Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_010531  Pnec_0932  methylmalonyl-CoA mutase  63.24 
 
 
724 aa  895    Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_2040  methylmalonyl-CoA mutase  64.61 
 
 
720 aa  930    Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_3398  methylmalonyl-CoA mutase  63 
 
 
731 aa  912    Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.526303  normal 
 
 
-
 
NC_010581  Bind_2199  methylmalonyl-CoA mutase, large subunit  70.3 
 
 
727 aa  982    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A1014  methylmalonyl-CoA mutase  63.24 
 
 
719 aa  918    Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.856859 
 
 
-
 
NC_010655  Amuc_1983  methylmalonyl-CoA mutase  66.48 
 
 
714 aa  964    Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  0.774356  normal  0.0211504 
 
 
-
 
NC_009049  Rsph17029_0867  methylmalonyl-CoA mutase  65.63 
 
 
709 aa  916    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.134958  normal 
 
 
-
 
NC_009800  EcHS_A3075  methylmalonyl-CoA mutase  62.08 
 
 
714 aa  853    Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_3304  methylmalonyl-CoA mutase, large subunit  66.57 
 
 
719 aa  984    Opitutus terrae PB90-1  Bacteria  decreased coverage  0.00679496  normal  0.683271 
 
 
-
 
NC_009077  Mjls_3133  methylmalonyl-CoA mutase  73.65 
 
 
760 aa  1033    Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_0079  methylmalonyl-CoA mutase  62.68 
 
 
706 aa  894    Desulfococcus oleovorans Hxd3  Bacteria  normal  0.373309  n/a   
 
 
-
 
NC_010498  EcSMS35_3053  methylmalonyl-CoA mutase  61.93 
 
 
714 aa  850    Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011674  PHATRDRAFT_51830  methylmalonyl-coa mutase  55.52 
 
 
719 aa  770    Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  n/a   
 
 
-
 
NC_010172  Mext_4794  methylmalonyl-CoA mutase  79.36 
 
 
721 aa  1143    Methylobacterium extorquens PA1  Bacteria  normal  0.134601  normal  0.670991 
 
 
-
 
NC_009338  Mflv_3649  methylmalonyl-CoA mutase  74.57 
 
 
752 aa  1052    Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.808365 
 
 
-
 
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