More than 300 homologs were found in PanDaTox collection
for query gene Rsph17025_3008 on replicon NC_009428
Organism: Rhodobacter sphaeroides ATCC 17025



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013757  Gobs_4128  methylmalonyl-CoA mutase, large subunit  63.5 
 
 		 667 aa  804    Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_011757  Mchl_0334  methylmalonyl-CoA mutase, large subunit  67.03 
 
 		 688 aa  885    Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_0366  methylmalonyl-CoA mutase, large subunit  67.03 
 
 		 688 aa  887    Methylobacterium populi BJ001  Bacteria  normal  0.560359  normal  1 
 
 
-
 
NC_011894  Mnod_0038  methylmalonyl-CoA mutase, large subunit  68.77 
 
 		 690 aa  896    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.579469  n/a   
 
 
-
 
NC_007493  RSP_0961  methylmalonyl-CoA mutase  95.55 
 
 		 652 aa  1231    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009720  Xaut_1197  methylmalonyl-CoA mutase, large subunit  70.43 
 
 		 657 aa  931    Xanthobacter autotrophicus Py2  Bacteria  normal  0.282186  normal  1 
 
 
-
 
NC_010511  M446_0036  methylmalonyl-CoA mutase, large subunit  69.16 
 
 		 675 aa  897    Methylobacterium sp. 4-46  Bacteria  normal  0.0637775  decreased coverage  0.00272797 
 
 
-
 
NC_007643  Rru_A3062  methylmalonyl-CoA mutase  70.49 
 
 		 671 aa  940    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_007777  Francci3_2169  methylmalonyl-CoA mutase  60.89 
 
 		 692 aa  811    Frankia sp. CcI3  Bacteria  normal  0.485789  normal  0.751366 
 
 
-
 
NC_013131  Caci_1226  methylmalonyl-CoA mutase, large subunit  63.68 
 
 		 672 aa  819    Catenulispora acidiphila DSM 44928  Bacteria  normal  0.6728  normal  0.0673448 
 
 
-
 
NC_007802  Jann_0797  methylmalonyl-CoA mutase  77.38 
 
 		 654 aa  1032    Jannaschia sp. CCS1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009719  Plav_1625  methylmalonyl-CoA mutase, large subunit  72.31 
 
 		 667 aa  947    Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013124  Afer_0223  methylmalonyl-CoA mutase, large subunit  54.73 
 
 		 647 aa  666    Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.784456  n/a   
 
 
-
 
NC_010172  Mext_0290  methylmalonyl-CoA mutase, large subunit  66.87 
 
 		 688 aa  885    Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.515512 
 
 
-
 
NC_010338  Caul_0836  methylmalonyl-CoA mutase, large subunit  68.62 
 
 		 662 aa  907    Caulobacter sp. K31  Bacteria  normal  0.733808  normal  0.66979 
 
 
-
 
NC_008043  TM1040_3106  methylmalonyl-CoA mutase  79.13 
 
 		 661 aa  1061    Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009953  Sare_4003  methylmalonyl-CoA mutase, large subunit  60.74 
 
 		 685 aa  743    Salinispora arenicola CNS-205  Bacteria  normal  0.446619  hitchhiker  0.000372138 
 
 
-
 
NC_009952  Dshi_2855  methylmalonyl-CoA mutase  81.29 
 
 		 657 aa  1090    Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013739  Cwoe_4193  methylmalonyl-CoA mutase, large subunit  64.54 
 
 		 670 aa  837    Conexibacter woesei DSM 14684  Bacteria  normal  0.669168  normal  0.90036 
 
 
-
 
NC_008687  Pden_3875  methylmalonyl-CoA mutase, large subunit  80.98 
 
 		 688 aa  1058    Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008699  Noca_1772  methylmalonyl-CoA mutase  64.62 
 
 		 680 aa  830    Nocardioides sp. JS614  Bacteria  normal  0.292142  n/a   
 
 
-
 
NC_009428  Rsph17025_3008  methylmalonyl-CoA mutase, large subunit  100 
 
 		 652 aa  1336    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.842553  normal  0.248307 
 
 
-
 
NC_009049  Rsph17029_2621  methylmalonyl-CoA mutase, large subunit  95.55 
 
 		 652 aa  1231    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010505  Mrad2831_1106  methylmalonyl-CoA mutase, large subunit  67.08 
 
 		 680 aa  886    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009921  Franean1_1034  methylmalonyl-CoA mutase, large subunit  63.75 
 
 		 666 aa  833    Frankia sp. EAN1pec  Bacteria  normal  0.488774  normal  0.762762 
 
 
-
 
NC_009380  Strop_3621  methylmalonyl-CoA mutase, large subunit  61.49 
 
 		 668 aa  748    Salinispora tropica CNB-440  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009523  RoseRS_0545  methylmalonyl-CoA mutase  39.87 
 
 		 740 aa  415  1e-114  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009767  Rcas_3872  methylmalonyl-CoA mutase  39.4 
 
 		 740 aa  409  1e-113  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.231489  normal  0.125312 
 
 
-
 
NC_009943  Dole_0079  methylmalonyl-CoA mutase  38.67 
 
 		 706 aa  407  1.0000000000000001e-112  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.373309  n/a   
 
 
-
 
NC_009441  Fjoh_0014  methylmalonyl-CoA mutase  36.93 
 
 		 711 aa  405  1e-111  Flavobacterium johnsoniae UW101  Bacteria  normal  0.185174  n/a   
 
 
-
 
NC_010814  Glov_3260  methylmalonyl-CoA mutase, large subunit  38.29 
 
 		 713 aa  401  9.999999999999999e-111  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_010831  Cphamn1_1173  methylmalonyl-CoA mutase, large subunit  37.12 
 
 		 1106 aa  400  9.999999999999999e-111  Chlorobium phaeobacteroides BS1  Bacteria  normal  1  decreased coverage  0.00593374 
 
 
-
 
NC_011992  Dtpsy_1849  methylmalonyl-CoA mutase  37.24 
 
 		 720 aa  401  9.999999999999999e-111  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_3042  methylmalonyl-CoA mutase  39.62 
 
 		 720 aa  402  9.999999999999999e-111  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  0.057217 
 
 
-
 
NC_011060  Ppha_1167  methylmalonyl-CoA mutase  38.23 
 
 		 712 aa  401  9.999999999999999e-111  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.169366  n/a   
 
 
-
 
NC_008781  Pnap_2383  methylmalonyl-CoA mutase  37.91 
 
 		 718 aa  401  9.999999999999999e-111  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013522  Taci_0288  methylmalonyl-CoA mutase, large subunit  45.23 
 
 		 559 aa  402  9.999999999999999e-111  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  1  n/a   
 
 
-
 
NC_007298  Daro_4006  methylmalonyl-CoA mutase  37.82 
 
 		 716 aa  398  1e-109  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007794  Saro_0811  methylmalonyl-CoA mutase  37.44 
 
 		 714 aa  398  1e-109  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.251875  n/a   
 
 
-
 
NC_008025  Dgeo_1320  methylmalonyl-CoA mutase  38.35 
 
 		 722 aa  397  1e-109  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011059  Paes_0875  methylmalonyl-CoA mutase, large subunit  37.08 
 
 		 1081 aa  397  1e-109  Prosthecochloris aestuarii DSM 271  Bacteria  normal  1  normal  0.036821 
 
 
-
 
NC_010571  Oter_3304  methylmalonyl-CoA mutase, large subunit  39.08 
 
 		 719 aa  398  1e-109  Opitutus terrae PB90-1  Bacteria  decreased coverage  0.00679496  normal  0.683271 
 
 
-
 
NC_010803  Clim_0868  methylmalonyl-CoA mutase  36.93 
 
 		 715 aa  397  1e-109  Chlorobium limicola DSM 245  Bacteria  normal  1  n/a   
 
 
-
 
NC_008782  Ajs_2040  methylmalonyl-CoA mutase  36.93 
 
 		 720 aa  398  1e-109  Acidovorax sp. JS42  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014165  Tbis_1920  methylmalonyl-CoA mutase large subunit  38.99 
 
 		 720 aa  398  1e-109  Thermobispora bispora DSM 43833  Bacteria  normal  0.0552222  normal  0.617547 
 
 
-
 
NC_013169  Ksed_22170  methylmalonyl-CoA mutase  37.34 
 
 		 754 aa  398  1e-109  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.366718  normal  0.398515 
 
 
-
 
NC_007514  Cag_1223  methylmalonyl-CoA mutase  37.24 
 
 		 712 aa  393  1e-108  Chlorobium chlorochromatii CaD3  Bacteria  normal  1  n/a   
 
 
-
 
NC_010002  Daci_3753  methylmalonyl-CoA mutase  37.97 
 
 		 738 aa  392  1e-108  Delftia acidovorans SPH-1  Bacteria  normal  0.801598  normal  0.879758 
 
 
-
 
NC_007908  Rfer_2805  methylmalonyl-CoA mutase  37.18 
 
 		 719 aa  395  1e-108  Rhodoferax ferrireducens T118  Bacteria  normal  0.147831  n/a   
 
 
-
 
NC_007925  RPC_1760  methylmalonyl-CoA mutase  37.99 
 
 		 718 aa  394  1e-108  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  0.226069 
 
 
-
 
NC_011894  Mnod_4573  methylmalonyl-CoA mutase  39.3 
 
 		 720 aa  394  1e-108  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_013730  Slin_6640  methylmalonyl-CoA mutase, large subunit  36.76 
 
 		 724 aa  394  1e-108  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  0.70273 
 
 
-
 
NC_008639  Cpha266_1164  methylmalonyl-CoA mutase  37.56 
 
 		 713 aa  394  1e-108  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.197015  n/a   
 
 
-
 
NC_013037  Dfer_5804  methylmalonyl-CoA mutase  36.62 
 
 		 972 aa  393  1e-108  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.256305  normal  0.17905 
 
 
-
 
NC_011831  Cagg_1349  methylmalonyl-CoA mutase  39.72 
 
 		 733 aa  395  1e-108  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0148615  unclonable  0.0000000469192 
 
 
-
 
NC_008786  Veis_3398  methylmalonyl-CoA mutase  36.86 
 
 		 731 aa  392  1e-108  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.526303  normal  1 
 
 
-
 
NC_009049  Rsph17029_0867  methylmalonyl-CoA mutase  38.03 
 
 		 709 aa  392  1e-108  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.134958  normal  1 
 
 
-
 
NC_012791  Vapar_2127  methylmalonyl-CoA mutase  37.03 
 
 		 720 aa  394  1e-108  Variovorax paradoxus S110  Bacteria  normal  0.063815  n/a   
 
 
-
 
NC_009511  Swit_2891  methylmalonyl-CoA mutase  36.28 
 
 		 716 aa  391  1e-107  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  0.17991 
 
 
-
 
NC_007493  RSP_2192  methylmalonyl-CoA mutase  37.72 
 
 		 709 aa  389  1e-107  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.172259  n/a   
 
 
-
 
NC_007643  Rru_A2479  methylmalonyl-CoA mutase  37.54 
 
 		 732 aa  389  1e-107  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_013159  Svir_05680  methylmalonyl-CoA mutase  37.94 
 
 		 726 aa  390  1e-107  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008254  Meso_0856  methylmalonyl-CoA mutase  36.67 
 
 		 714 aa  392  1e-107  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008752  Aave_2510  methylmalonyl-CoA mutase  37.5 
 
 		 722 aa  390  1e-107  Acidovorax citrulli AAC00-1  Bacteria  normal  1  normal  0.178476 
 
 
-
 
NC_014230  CA2559_07125  methylmalonyl-CoA mutase  36.61 
 
 		 707 aa  392  1e-107  Croceibacter atlanticus HTCC2559  Bacteria  normal  1  n/a   
 
 
-
 
NC_008825  Mpe_A1014  methylmalonyl-CoA mutase  37.56 
 
 		 719 aa  390  1e-107  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  0.856859 
 
 
-
 
NC_012793  GWCH70_2294  methylmalonyl-CoA mutase  37.38 
 
 		 731 aa  392  1e-107  Geobacillus sp. WCH70  Bacteria  normal  0.895743  n/a   
 
 
-
 
NC_013595  Sros_3188  Methylmalonyl-CoA mutase  39.06 
 
 		 725 aa  387  1e-106  Streptosporangium roseum DSM 43021  Bacteria  normal  0.36577  normal  0.670701 
 
 
-
 
NC_009565  TBFG_11523  methylmalonyl-CoA mutase  38.54 
 
 		 750 aa  387  1e-106  Mycobacterium tuberculosis F11  Bacteria  normal  1  normal  0.26728 
 
 
-
 
NC_009719  Plav_1702  methylmalonyl-CoA mutase  37.46 
 
 		 718 aa  387  1e-106  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  0.0321557 
 
 
-
 
NC_007406  Nwi_2238  methylmalonyl-CoA mutase  37.95 
 
 		 722 aa  386  1e-106  Nitrobacter winogradskyi Nb-255  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007512  Plut_1292  methylmalonyl-CoA mutase  38.17 
 
 		 714 aa  388  1e-106  Chlorobium luteolum DSM 273  Bacteria  normal  1  normal  0.816153 
 
 
-
 
NC_011662  Tmz1t_3486  methylmalonyl-CoA mutase  37.97 
 
 		 721 aa  387  1e-106  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_009616  Tmel_1860  methylmalonyl-CoA mutase, large subunit  44.49 
 
 		 559 aa  389  1e-106  Thermosipho melanesiensis BI429  Bacteria  decreased coverage  0.0000937746  n/a   
 
 
-
 
NC_007948  Bpro_2161  methylmalonyl-CoA mutase  38.17 
 
 		 723 aa  387  1e-106  Polaromonas sp. JS666  Bacteria  normal  0.385791  normal  0.481947 
 
 
-
 
NC_013441  Gbro_2420  methylmalonyl-CoA mutase, large subunit  37.72 
 
 		 763 aa  387  1e-106  Gordonia bronchialis DSM 43247  Bacteria  normal  1  n/a   
 
 
-
 
NC_007964  Nham_2638  methylmalonyl-CoA mutase  37.38 
 
 		 720 aa  386  1e-106  Nitrobacter hamburgensis X14  Bacteria  normal  1  n/a   
 
 
-
 
NC_013093  Amir_6418  methylmalonyl-CoA mutase  38.34 
 
 		 729 aa  389  1e-106  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_008048  Sala_1221  methylmalonyl-CoA mutase  39.12 
 
 		 715 aa  386  1e-106  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.584735  normal  1 
 
 
-
 
NC_009077  Mjls_3133  methylmalonyl-CoA mutase  38.24 
 
 		 760 aa  387  1e-106  Mycobacterium sp. JLS  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_2039  methylmalonyl-CoA mutase  37.07 
 
 		 719 aa  387  1e-106  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_002950  PG1657  methylmalonyl-CoA mutase  36.13 
 
 		 715 aa  385  1e-105  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.387473 
 
 
-
 
NC_011353  ECH74115_4213  methylmalonyl-CoA mutase  37.58 
 
 		 714 aa  383  1e-105  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010320  Teth514_1855  methylmalonyl-CoA mutase, large subunit  43.69 
 
 		 560 aa  384  1e-105  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_009675  Anae109_0281  methylmalonyl-CoA mutase, large subunit  45.23 
 
 		 549 aa  383  1e-105  Anaeromyxobacter sp. Fw109-5  Bacteria  decreased coverage  0.000219849  normal  0.200381 
 
 
-
 
NC_009485  BBta_3021  methylmalonyl-CoA mutase  37.68 
 
 		 718 aa  384  1e-105  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  0.954275 
 
 
-
 
NC_008146  Mmcs_3122  methylmalonyl-CoA mutase  38.08 
 
 		 760 aa  383  1e-105  Mycobacterium sp. MCS  Bacteria  normal  0.203405  n/a   
 
 
-
 
NC_013411  GYMC61_0279  methylmalonyl-CoA mutase  37.5 
 
 		 731 aa  385  1e-105  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013510  Tcur_2505  methylmalonyl-CoA mutase, large subunit  38.22 
 
 		 736 aa  385  1e-105  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000422516  n/a   
 
 
-
 
NC_009800  EcHS_A3075  methylmalonyl-CoA mutase  37.58 
 
 		 714 aa  382  1e-105  Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
NC_008705  Mkms_3183  methylmalonyl-CoA mutase  38.08 
 
 		 760 aa  383  1e-105  Mycobacterium sp. KMS  Bacteria  normal  1  normal  0.0724467 
 
 
-
 
NC_008726  Mvan_2763  methylmalonyl-CoA mutase  37.79 
 
 		 751 aa  385  1e-105  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0863781  normal  0.728933 
 
 
-
 
NC_009428  Rsph17025_2300  methylmalonyl-CoA mutase  38.51 
 
 		 709 aa  382  1e-105  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009801  EcE24377A_3244  methylmalonyl-CoA mutase  37.42 
 
 		 714 aa  381  1e-104  Escherichia coli E24377A  Bacteria  normal  0.98625  n/a   
 
 
-
 
NC_010468  EcolC_0793  methylmalonyl-CoA mutase  37.42 
 
 		 714 aa  381  1e-104  Escherichia coli ATCC 8739  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007778  RPB_3538  methylmalonyl-CoA mutase  37.85 
 
 		 736 aa  382  1e-104  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.162308  normal  0.256268 
 
 
-
 
NC_008044  TM1040_1865  methylmalonyl-CoA mutase  37.68 
 
 		 661 aa  381  1e-104  Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009952  Dshi_0726  methylmalonyl-CoA mutase  37.56 
 
 		 712 aa  381  1e-104  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.999011  normal  1 
 
 
-
 
NC_010338  Caul_3630  methylmalonyl-CoA mutase  37.03 
 
 		 717 aa  380  1e-104  Caulobacter sp. K31  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011666  Msil_3784  methylmalonyl-CoA mutase, large subunit  38.9 
 
 		 736 aa  380  1e-104  Methylocella silvestris BL2  Bacteria  n/a    normal  0.362344 
 
 
-
 
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