| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1167 |
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| Symbol | |
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| ID | 6463525 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 1218543 |
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| End bp | 1220681 |
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| Gene Length | 2139 bp |
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| Protein Length | 712 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 642727415 |
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| Product | methylmalonyl-CoA mutase |
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| Protein accession | YP_002018059 |
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| Protein GI | 194336265 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit
[COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.169366 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGACCGG ACTTTTCAGA GATCGATATT TTCTCTTCCG CTCCAACAGC CAATAAAACT
GGCACAGAAG CTCAGCAGAC AGGCTGGACA ACTGCGGAAG GAATCGACAT CAAATCCCTA
TACCGTGAAT CCGATATTGG ACAAGCTGAG CAACTGAACT TTGCTCCCGG TTTTGCTCCC
TACATAGGTG GCCCCTACAC CACCATGTAC ACCACACAAC CCTGGACGAT CAGGCAGTAT
GCAGGATTTT CAACCGCCGA GGAGTCGAAT CGCTTTTACC GCCAGAACCT TGCCGCAGGT
CAGAAAGGGC TCTCCGTCGC TTTCGACCTT CCAACACACC GTGGTTACGA TTCTGACCAT
GAACGGGTCA TTGGCGACGT CGGGAAAGCC GGTGTAGCTG TAGACTCGGT TGAAGATATG
AAAATCCTCT TTGACCAGAT TCCGCTTGGC GACATCTCAG TCTCTATGAC CATGAACGGA
GCAGTGCTGC CCATCATGGC CTTTTATATC GTTGCGGCAG AAGAGCAGGG AGTGCCAACC
GAAAAGCTCA GCGGTACCAT CCAGAACGAT ATTCTCAAAG AGTTCATGGT ACGCAACACT
TATATCTATC CGCCAGAACC CTCCATGCGG ATTATTGCCG ACATTTTCCG CTACACCAGC
GAAAAAATGC CGAAATTCAA CTCGATCAGC ATCTCAGGCT ACCACATGCA GGAAGCGGGA
GCAACAGCCG ACCTGGAGCT GGCCTTCACT CTTGCCGACG GCCTCGAATA TATTCGTACC
GGCCTGAAAA CAGGTCTCGA TATTGATGCC TTTGCGCCAC GCCTCTCTTT CTTCTGGGCG
ACCGGAATGA ACTTCTTTAT GGAGATAGCC AAATTAAGGG CCGCAAGAAT GCTCTGGGCA
AAAATCGTCG GGCAGTTCAA TCCGAAAAAT CCAAAATCAC TCATGCTCCG TTCGCACTGC
CAGACCTCTG GTTGGAGTCT GACCGAGCAG GATCCCTTCA ATAACATCAC CCGCACCTGC
CTGGAGGCTC TGGCAGCAAC GCTCGGCCAC ACCCAGTCAC TGCACACCAA TGCGCTTGAT
GAAGCCATCG CACTGCCATC ACCCTTTTCA GCCCGAATTG CCCGCAATAC CCAGCTCTAT
CTGCAGGAAG AGAGCGATAT CACCAGAAGC ATCGACCCCT GGGCTGGCTC CTCGTATGTT
GAATACCTGA CGGCAGAGCT CGCGGCGAAA GCATGGAAAA TCATCAGCGA CATCGAAGAG
GCGGGAGGAA TGGTCAAAGC GATCGAACAA GGACTCCCAA AACTGCAGAT TGAAGAGGCT
GCAACCCGTA AACAGGCCCG CATCGACAGC GGCAAGGAGA TCATTGTCGG CGTCAACGGC
TACAAAACCA CAAGCAAAAC TGAGATTGAG CTGCTCGAAG TCGACAACAC CCTGGTACTC
GATCAACAGC TCCGGCGACT GACATCCATC AAGGCTGAAC GCGACAGCGA TGCTTGTGCC
CTTGCACTCA AGGCAATTGA GGAGAGCGCA GCATCCGGAG AGGGTAATCT GCTTGAACTG
GCCGTTGATG CCGCAAGAAA AAGAGCTACA TTGGGAGAAA TCTCATTCGC CTGCGAAAAA
ACTTTTGGAA GATATCGCGC CATAACCCGA CTTAACAGCA GTGTCTATAT GTCGCAGATG
CAGGACAATA CACTCTTTAA AGAGGCGCAG CAACTCGCCG ATACCTTTGC GTCGCTTGAC
GGTCGCCGTC CGAGAATCAT GGTTTCAAAA GTTGGACAGG ATGGCCACGA TCGTGGAGCA
AAGGTCATTG CCGCAGGCTT TGCCGATGTC GGTTTTGACG TCGATATCAG CCCTTTATTC
CAGACACCTG AAGAGGTGGT GCAGCAGGCA CTCGACAACG ATGTGCACCT GATCGGCATA
TCGAGCCTTG CCGCCGGCCA CAAGACCTTG ATCCCGAAAA TCATCGAAGA GCTAAAAGCC
CACAATCGGG AGGATATCCT TGTCATTGCA GGAGGCATCA TTCCCGAAAA AGATCACGCT
TTCCTCTATG AAAAAGGGGT GGCAGGCATC TTCGGACCGG GAACCGTCAT TGCCGAAGCG
GCCATTACGA TTTTGAAAAA ATTGATCGCA CAGGTGTAA
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| Protein sequence | MRPDFSEIDI FSSAPTANKT GTEAQQTGWT TAEGIDIKSL YRESDIGQAE QLNFAPGFAP
YIGGPYTTMY TTQPWTIRQY AGFSTAEESN RFYRQNLAAG QKGLSVAFDL PTHRGYDSDH
ERVIGDVGKA GVAVDSVEDM KILFDQIPLG DISVSMTMNG AVLPIMAFYI VAAEEQGVPT
EKLSGTIQND ILKEFMVRNT YIYPPEPSMR IIADIFRYTS EKMPKFNSIS ISGYHMQEAG
ATADLELAFT LADGLEYIRT GLKTGLDIDA FAPRLSFFWA TGMNFFMEIA KLRAARMLWA
KIVGQFNPKN PKSLMLRSHC QTSGWSLTEQ DPFNNITRTC LEALAATLGH TQSLHTNALD
EAIALPSPFS ARIARNTQLY LQEESDITRS IDPWAGSSYV EYLTAELAAK AWKIISDIEE
AGGMVKAIEQ GLPKLQIEEA ATRKQARIDS GKEIIVGVNG YKTTSKTEIE LLEVDNTLVL
DQQLRRLTSI KAERDSDACA LALKAIEESA ASGEGNLLEL AVDAARKRAT LGEISFACEK
TFGRYRAITR LNSSVYMSQM QDNTLFKEAQ QLADTFASLD GRRPRIMVSK VGQDGHDRGA
KVIAAGFADV GFDVDISPLF QTPEEVVQQA LDNDVHLIGI SSLAAGHKTL IPKIIEELKA
HNREDILVIA GGIIPEKDHA FLYEKGVAGI FGPGTVIAEA AITILKKLIA QV
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