| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0223 |
|---|
| Symbol | |
|---|
| ID | 8322276 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | + |
|---|
| Start bp | 226754 |
|---|
| End bp | 228697 |
|---|
| Gene Length | 1944 bp |
|---|
| Protein Length | 647 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644951370 |
|---|
| Product | methylmalonyl-CoA mutase, large subunit |
|---|
| Protein accession | YP_003108865 |
|---|
| Protein GI | 256371041 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.784456 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATCCGCC TTCCCGAGCC CGACCGACCC TGGGTCATGC GGACCTATGC GGGTCACTCG
AGCGCCCGGG CCACAAACGC GCTGATGCAT CGCAACCTCG CACGCGGTCA GACCGGCCTC
TCCATCGCGT TCGACCTGCC CACGCAACTC GGCTACGACC CTGACGACGC CCTTGCTGAG
GGCGAGGTTG GCAGGGTCGG CGTGCCGATC GCCCACCGCG GCGACGTCGC CGAACTCTTC
GACGGTCTCC GGCTCGACGC CATGAACACG TCGATGACCA TCAACGCAAC CGCCCCCTGG
CTCTTCGCCC TCTACCTCGA CCGGGCGAGC GAGGAGGGGA GTGCGTGGGG GGCGCTGGCG
GGTACGACGC AGAACGACCT GGTCAAGGAG TTCCTCTCTC GGGGCACCTA CCTGCTCGAC
CCTGCCAACT CGAAGCGAGT CAGCGTCGAT CTGATCACGT TCGCTGTCGA GCACGTGCCG
CGCTGGAACC CCATCAACGT CTGTTCGTAC CACCTCCAGG AGGCTGGCGC GACGCCGGTC
CAAGAGGTCG CGATCGCCCT CGCGACGGCG ATCGACGTGC TCGATGCCGT TCGAGCTCGC
GGCGTCGGTG ACGACGTGCT CGCACGAGCC GTGGGTCGCA TGTCGTTCTT CTTGAACGCA
GGCATTCGCT TCATCGAGGA AGTCGCCAAG GTCCGGGCAT TCTCCCGCCT CTGGGAAGGC
ATCGTTCGTG AGCGCTATGG CATCACCGAC CCACGTCTCG CGCGCTTTCG CTATGGGGTC
CAGGTCAACT CGCTTGGCCT CACGGAGCTC CAGCCCGAGA ACAACGTCTA CCGGATCATC
CTCGAAGCGC TCGGGGTGAC GCTCTCGCGC GATGCGCGGG CGCGGGCGTT GCAACTGCCG
GCGTGGAACG AGGCGATTGG CCTGCCGCGC CCGGTCGATC AGCAGTGGTC GTTGCGGGCG
CAGCAGATCC TCGCCTACGA GACCGACCTC CTCGCCTACC CGGACATCTT CGAGGGATCG
TACGTCATGG AGCAGCTCAC CACCGAGCTC GCCGATGCAG CCGGCGCCGA GCTCGAGCGC
ATCGTCGCCG ACGGGGGTGC GTTCGCCTGT GTCGACACGT TGAAGGCGGA GCTCGTCGCG
TCTCAGGCCG AGCGCCTCCG AGCCATCGAG GCCGGCGATC AGGTCGTGGT CGGCGTCAAT
CGGTTCGTCG AGTCCGAGCC GTCGCCGCTG CGTCGAGGCG ACGACGTCGT CCACCAGGAG
GTCGACCTTG CCGCCATCGA GGCGCTCATC GCGCGGCTGC GCGAGCATCG ACGCCAGCGT
GAGGGACGTC GTGTCGTCGA GGCGCGCCGG GCCCTCGAGG AAGCGGCTCG GAGTGGAACG
AACGTCATGG GACCCACGTT GGAGCTCGTC CGTGCCGGCG GGACCACCGG TGAGTGGGCG
GCGACGCTCC GCGACACCTT CGGGTCCTAT CGCGCCCCGA CCGGTGTGGG TGCGGTTGCC
GAACGCCTCG GCCGGCGGGG TCGGTCGGTG TCCATCGTCG CCTCGCCGCC GCCGCGCCTC
CTCGTCGCCA AGCCGGGACT CGATGGCCAC TCGAACGGCG CGGAGCAGAT CGCGGTTGCG
GCACGCGATG CGGGTTTCGA GGTCGTCTAC CAGGGCATTC GCCAGCAACC TGCCGACATT
GCGGCGGTAG CGCGCGACGA GGACGTCGAC CTCGTCGGCC TGTCCATCCT CTCGGGCTCG
CACCGCACGC TCGTACCGCA GGTCCTCGAG GCACTTCGGG CAGCTGGCGT GACGGTTCCG
GTCGTGGTTG GCGGGATCAT ACCGCCACCC GACGCGGCCT GGCTCGAAGA GCACGGTGTG
GCTCGCGTCT TCACACCACG CGACTGGCGT CTCGACGAGA TCGTGCGCGA GCTCGTCGTC
CTCGCGCGTG GTGCTCGCTC GTGA
|
|---|
| Protein sequence | MIRLPEPDRP WVMRTYAGHS SARATNALMH RNLARGQTGL SIAFDLPTQL GYDPDDALAE
GEVGRVGVPI AHRGDVAELF DGLRLDAMNT SMTINATAPW LFALYLDRAS EEGSAWGALA
GTTQNDLVKE FLSRGTYLLD PANSKRVSVD LITFAVEHVP RWNPINVCSY HLQEAGATPV
QEVAIALATA IDVLDAVRAR GVGDDVLARA VGRMSFFLNA GIRFIEEVAK VRAFSRLWEG
IVRERYGITD PRLARFRYGV QVNSLGLTEL QPENNVYRII LEALGVTLSR DARARALQLP
AWNEAIGLPR PVDQQWSLRA QQILAYETDL LAYPDIFEGS YVMEQLTTEL ADAAGAELER
IVADGGAFAC VDTLKAELVA SQAERLRAIE AGDQVVVGVN RFVESEPSPL RRGDDVVHQE
VDLAAIEALI ARLREHRRQR EGRRVVEARR ALEEAARSGT NVMGPTLELV RAGGTTGEWA
ATLRDTFGSY RAPTGVGAVA ERLGRRGRSV SIVASPPPRL LVAKPGLDGH SNGAEQIAVA
ARDAGFEVVY QGIRQQPADI AAVARDEDVD LVGLSILSGS HRTLVPQVLE ALRAAGVTVP
VVVGGIIPPP DAAWLEEHGV ARVFTPRDWR LDEIVRELVV LARGARS
|
|---|
| |