| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1625 |
|---|
| Symbol | |
|---|
| ID | 5456327 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 1760695 |
|---|
| End bp | 1762698 |
|---|
| Gene Length | 2004 bp |
|---|
| Protein Length | 667 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640877198 |
|---|
| Product | methylmalonyl-CoA mutase, large subunit |
|---|
| Protein accession | YP_001412901 |
|---|
| Protein GI | 154252077 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit
[COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 80 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGGA ACGGTGGAAA CGGCGCGGGC GGTCCGAAAA AGGACCAGCC CTGGATTTTC
CGCACCTATG CCGGTCATTC GACGGCCAAG GCCTCGAACG AGCTTTACCG GACGAACCTG
TCGCGCGGCC AGACGGGCCT CTCGGTCGCC TTCGATCTGC CGACGCAGAC GGGCTATGAC
AGCGATCATG TTCTGGCAAA AGGCGAGGTC GGCAAGGTCG GTGTGCCGGT CTCCCATATC
GGCGACATGC GGGCGCTGTT CGACGGCATT CCCATGGAGC AGATGAACAC CTCCATGACG
ATCAACGCGA CGGCGGCCTG GCTGCTGGCG CTCTATATCG CCGTCGCCGA CGAGCATGGC
GCGGACCGCG CGAAGCTTCA GGGCACGGTC CAGAACGATA TCATCAAGGA ATATCTCTCG
CGCGGCACTT ATGTGTTTCC GCCCGCGCCG TCGATGCGGC TGCTGACCGA CGTCGTTTCC
TACACCTACA CGCAGGTGCC GAAGTGGAAC CCCACCAATG TCTGCTCCTA CCATCTGCAG
GAAGCGGGCG CGACGCCGGT GCAGGAACTT GCCTTTGCGC TGGCGACCGC GCAGGCCGTG
CTCGACCGGG TGAAGGAAGG CGGGCAGGTG CCGGAAAAGG ATTTTCCGCA GGTCGTCGGC
CGCATCAGTT TCTTCGTCAA TGCGGGCGTG CGCTTCATCA CCGAGATCGC GAAGATGCGC
GCCTTTGTCG ATCTCTGGGA CGAGATTTGC CGCGACCGCT ACGGCGTCGA GGATGCGAAG
CTCCGCCGCT TCCGCTATGG CGTGCAGGTG AATTCGCTCG GCCTCACCGA GCAGCAGCCG
GAAAACAACG TCTATCGCAT ACTGCTCGAA ATGCTGGCCG TCACGCTGTC GAAGAATGCG
CGTGCCCGTG CCGTGCAGCT TCCGGCATGG AACGAGGCGC TCGGCCTGCC GCGCCCGTGG
GACCAGCAAT GGTCGCTCCG CGCACAGCAG ATCCTCGCCT ATGAAAGTGA CCTTCTCGAA
TATGGCGACA TCTTCGACGG GTCGAAGGTG ATGGATGCGA AGGTCGAGGC GCTGAAGGCG
GAAGCGCGCG AGGAGCTTGC GCGCATCGAG GAGATGGGCG GCGCGGTTGC CGCCGTCGAG
AGCGCCTACA TGAAAGAGCG CCTCGTCGAA TCCAATTCCG CGCGGCTCGA AGAGATCGAA
GCCGGGCGGC AGGTCGTGGT CGGCGTCAAC AGATACGAGG AATCGGCGCC GTCGCCGCTC
TCCACGGGTG CTGGCTCGAT CCATGTGGTC GATGCGGGCG TCGAGGCGGA GCAGGTCGCG
GCGCTGAAGA AGTGGCGCGA AACGCGCGAC GCCGCCGCCG TCGAAGCCGC TCTTGCCGAT
CTTCGGCGCG CGGCGAAGGA CGGGCGCAAT ATCATGGAGC CTTCGATCGT CTGCGCGAAG
GCGGGCGTCA CGACCGGCGA GTGGGGCGCG GCGCTGCGCG AGACCTTCGG CGAGTATCGC
GCGCCGACGG GTGTTTCACG CGCGGCGCGC AATGCACCCG GCGATCTCGA TCCCGTGCGG
GAGATGGTCA ATGCCGTTTC GGCGAAGCTT GGGCGCCGTC TCAAATTCCT TGTCGGCAAG
CCCGGCCTCG ACGGTCATTC CAATGGTGCC GAGCAGATTG CGGTTCGCGC CCGCGACAGC
GGCATGGATG TCGTCTATGA GGGCATTCGC CTGACGCCGG AACAGATCGT CCAGGCGGCG
CTCGATGGCG AGGTCCATGT GGTCGGGCTC TCCATCCTGT CGGGCAGTCA CGTGTCGCTG
GTGGCGGATC TGATGGACCG CATGCGCGAT GCCGGGCTCG CCAACATACC GGTGATCGTC
GGCGGCATCA TCCCGCCGGA GGATGAGGAG ACGCTCCGCG CCGCCGGCGT CGCCGCGATC
TACACGCCCA AGGATTTCCA GATCAACGAC ATCATGGCCG ATGTGGTCCG CCTCGTGGAC
TACACCACCG AAGAGGCGGC GTGA
|
|---|
| Protein sequence | MSGNGGNGAG GPKKDQPWIF RTYAGHSTAK ASNELYRTNL SRGQTGLSVA FDLPTQTGYD
SDHVLAKGEV GKVGVPVSHI GDMRALFDGI PMEQMNTSMT INATAAWLLA LYIAVADEHG
ADRAKLQGTV QNDIIKEYLS RGTYVFPPAP SMRLLTDVVS YTYTQVPKWN PTNVCSYHLQ
EAGATPVQEL AFALATAQAV LDRVKEGGQV PEKDFPQVVG RISFFVNAGV RFITEIAKMR
AFVDLWDEIC RDRYGVEDAK LRRFRYGVQV NSLGLTEQQP ENNVYRILLE MLAVTLSKNA
RARAVQLPAW NEALGLPRPW DQQWSLRAQQ ILAYESDLLE YGDIFDGSKV MDAKVEALKA
EAREELARIE EMGGAVAAVE SAYMKERLVE SNSARLEEIE AGRQVVVGVN RYEESAPSPL
STGAGSIHVV DAGVEAEQVA ALKKWRETRD AAAVEAALAD LRRAAKDGRN IMEPSIVCAK
AGVTTGEWGA ALRETFGEYR APTGVSRAAR NAPGDLDPVR EMVNAVSAKL GRRLKFLVGK
PGLDGHSNGA EQIAVRARDS GMDVVYEGIR LTPEQIVQAA LDGEVHVVGL SILSGSHVSL
VADLMDRMRD AGLANIPVIV GGIIPPEDEE TLRAAGVAAI YTPKDFQIND IMADVVRLVD
YTTEEAA
|
|---|
| |