More than 300 homologs were found in PanDaTox collection
for query gene Franean1_1034 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_011757  Mchl_0334  methylmalonyl-CoA mutase, large subunit  63.61 
 
 		 688 aa  835    Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013124  Afer_0223  methylmalonyl-CoA mutase, large subunit  61.14 
 
 		 647 aa  733    Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.784456  n/a   
 
 
-
 
NC_010725  Mpop_0366  methylmalonyl-CoA mutase, large subunit  63.61 
 
 		 688 aa  840    Methylobacterium populi BJ001  Bacteria  normal  0.560359  normal  1 
 
 
-
 
NC_013757  Gobs_4128  methylmalonyl-CoA mutase, large subunit  77.32 
 
 		 667 aa  971    Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_009921  Franean1_1034  methylmalonyl-CoA mutase, large subunit  100 
 
 		 666 aa  1337    Frankia sp. EAN1pec  Bacteria  normal  0.488774  normal  0.762762 
 
 
-
 
NC_007493  RSP_0961  methylmalonyl-CoA mutase  63.59 
 
 		 652 aa  798    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007643  Rru_A3062  methylmalonyl-CoA mutase  68.1 
 
 		 671 aa  888    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_007777  Francci3_2169  methylmalonyl-CoA mutase  79.82 
 
 		 692 aa  1086    Frankia sp. CcI3  Bacteria  normal  0.485789  normal  0.751366 
 
 
-
 
NC_007802  Jann_0797  methylmalonyl-CoA mutase  62.69 
 
 		 654 aa  825    Jannaschia sp. CCS1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009720  Xaut_1197  methylmalonyl-CoA mutase, large subunit  65.54 
 
 		 657 aa  850    Xanthobacter autotrophicus Py2  Bacteria  normal  0.282186  normal  1 
 
 
-
 
NC_009952  Dshi_2855  methylmalonyl-CoA mutase  64.98 
 
 		 657 aa  854    Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_0290  methylmalonyl-CoA mutase, large subunit  63.46 
 
 		 688 aa  835    Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.515512 
 
 
-
 
NC_008043  TM1040_3106  methylmalonyl-CoA mutase  63.69 
 
 		 661 aa  852    Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013131  Caci_1226  methylmalonyl-CoA mutase, large subunit  74.92 
 
 		 672 aa  965    Catenulispora acidiphila DSM 44928  Bacteria  normal  0.6728  normal  0.0673448 
 
 
-
 
NC_009428  Rsph17025_3008  methylmalonyl-CoA mutase, large subunit  64.36 
 
 		 652 aa  812    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.842553  normal  0.248307 
 
 
-
 
NC_010338  Caul_0836  methylmalonyl-CoA mutase, large subunit  63.43 
 
 		 662 aa  823    Caulobacter sp. K31  Bacteria  normal  0.733808  normal  0.66979 
 
 
-
 
NC_011894  Mnod_0038  methylmalonyl-CoA mutase, large subunit  65.75 
 
 		 690 aa  859    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.579469  n/a   
 
 
-
 
NC_009953  Sare_4003  methylmalonyl-CoA mutase, large subunit  71.39 
 
 		 685 aa  894    Salinispora arenicola CNS-205  Bacteria  normal  0.446619  hitchhiker  0.000372138 
 
 
-
 
NC_009380  Strop_3621  methylmalonyl-CoA mutase, large subunit  71.89 
 
 		 668 aa  893    Salinispora tropica CNB-440  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008687  Pden_3875  methylmalonyl-CoA mutase, large subunit  64.21 
 
 		 688 aa  814    Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_0036  methylmalonyl-CoA mutase, large subunit  65.44 
 
 		 675 aa  849    Methylobacterium sp. 4-46  Bacteria  normal  0.0637775  decreased coverage  0.00272797 
 
 
-
 
NC_008699  Noca_1772  methylmalonyl-CoA mutase  74.55 
 
 		 680 aa  980    Nocardioides sp. JS614  Bacteria  normal  0.292142  n/a   
 
 
-
 
NC_013739  Cwoe_4193  methylmalonyl-CoA mutase, large subunit  68.48 
 
 		 670 aa  872    Conexibacter woesei DSM 14684  Bacteria  normal  0.669168  normal  0.90036 
 
 
-
 
NC_010505  Mrad2831_1106  methylmalonyl-CoA mutase, large subunit  62.88 
 
 		 680 aa  832    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009719  Plav_1625  methylmalonyl-CoA mutase, large subunit  65.44 
 
 		 667 aa  847    Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009049  Rsph17029_2621  methylmalonyl-CoA mutase, large subunit  63.44 
 
 		 652 aa  798    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011059  Paes_0875  methylmalonyl-CoA mutase, large subunit  38.93 
 
 		 1081 aa  443  1e-123  Prosthecochloris aestuarii DSM 271  Bacteria  normal  1  normal  0.036821 
 
 
-
 
NC_007794  Saro_0811  methylmalonyl-CoA mutase  40.6 
 
 		 714 aa  443  1e-123  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.251875  n/a   
 
 
-
 
NC_009511  Swit_2891  methylmalonyl-CoA mutase  39.5 
 
 		 716 aa  441  9.999999999999999e-123  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  0.17991 
 
 
-
 
NC_007514  Cag_1223  methylmalonyl-CoA mutase  39.18 
 
 		 712 aa  436  1e-121  Chlorobium chlorochromatii CaD3  Bacteria  normal  1  n/a   
 
 
-
 
NC_008025  Dgeo_1320  methylmalonyl-CoA mutase  40.03 
 
 		 722 aa  437  1e-121  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009943  Dole_0079  methylmalonyl-CoA mutase  39.72 
 
 		 706 aa  436  1e-121  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.373309  n/a   
 
 
-
 
NC_011992  Dtpsy_1849  methylmalonyl-CoA mutase  38.68 
 
 		 720 aa  435  1e-120  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_014230  CA2559_07125  methylmalonyl-CoA mutase  38.99 
 
 		 707 aa  435  1e-120  Croceibacter atlanticus HTCC2559  Bacteria  normal  1  n/a   
 
 
-
 
NC_008254  Meso_0856  methylmalonyl-CoA mutase  38.99 
 
 		 714 aa  433  1e-120  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010831  Cphamn1_1173  methylmalonyl-CoA mutase, large subunit  38.15 
 
 		 1106 aa  433  1e-120  Chlorobium phaeobacteroides BS1  Bacteria  normal  1  decreased coverage  0.00593374 
 
 
-
 
NC_007512  Plut_1292  methylmalonyl-CoA mutase  38.74 
 
 		 714 aa  431  1e-119  Chlorobium luteolum DSM 273  Bacteria  normal  1  normal  0.816153 
 
 
-
 
NC_009719  Plav_1702  methylmalonyl-CoA mutase  39.12 
 
 		 718 aa  430  1e-119  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  0.0321557 
 
 
-
 
NC_012791  Vapar_2127  methylmalonyl-CoA mutase  38.81 
 
 		 720 aa  431  1e-119  Variovorax paradoxus S110  Bacteria  normal  0.063815  n/a   
 
 
-
 
NC_013169  Ksed_22170  methylmalonyl-CoA mutase  39.45 
 
 		 754 aa  429  1e-119  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.366718  normal  0.398515 
 
 
-
 
NC_013595  Sros_3188  Methylmalonyl-CoA mutase  40.37 
 
 		 725 aa  430  1e-119  Streptosporangium roseum DSM 43021  Bacteria  normal  0.36577  normal  0.670701 
 
 
-
 
NC_008782  Ajs_2040  methylmalonyl-CoA mutase  38.36 
 
 		 720 aa  432  1e-119  Acidovorax sp. JS42  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009441  Fjoh_0014  methylmalonyl-CoA mutase  38.33 
 
 		 711 aa  428  1e-118  Flavobacterium johnsoniae UW101  Bacteria  normal  0.185174  n/a   
 
 
-
 
NC_008752  Aave_2510  methylmalonyl-CoA mutase  38.52 
 
 		 722 aa  427  1e-118  Acidovorax citrulli AAC00-1  Bacteria  normal  1  normal  0.178476 
 
 
-
 
NC_011060  Ppha_1167  methylmalonyl-CoA mutase  38.43 
 
 		 712 aa  426  1e-118  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.169366  n/a   
 
 
-
 
NC_007298  Daro_4006  methylmalonyl-CoA mutase  37.32 
 
 		 716 aa  425  1e-117  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009428  Rsph17025_2300  methylmalonyl-CoA mutase  40.22 
 
 		 709 aa  424  1e-117  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010002  Daci_3753  methylmalonyl-CoA mutase  38.91 
 
 		 738 aa  424  1e-117  Delftia acidovorans SPH-1  Bacteria  normal  0.801598  normal  0.879758 
 
 
-
 
NC_008786  Veis_3398  methylmalonyl-CoA mutase  38.17 
 
 		 731 aa  424  1e-117  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.526303  normal  1 
 
 
-
 
NC_009049  Rsph17029_0867  methylmalonyl-CoA mutase  39.27 
 
 		 709 aa  423  1e-117  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.134958  normal  1 
 
 
-
 
NC_010814  Glov_3260  methylmalonyl-CoA mutase, large subunit  39.12 
 
 		 713 aa  424  1e-117  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_014165  Tbis_1920  methylmalonyl-CoA mutase large subunit  40.25 
 
 		 720 aa  423  1e-117  Thermobispora bispora DSM 43833  Bacteria  normal  0.0552222  normal  0.617547 
 
 
-
 
NC_009952  Dshi_0726  methylmalonyl-CoA mutase  38.3 
 
 		 712 aa  419  1e-116  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.999011  normal  1 
 
 
-
 
NC_009485  BBta_3021  methylmalonyl-CoA mutase  39.34 
 
 		 718 aa  422  1e-116  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  0.954275 
 
 
-
 
NC_007493  RSP_2192  methylmalonyl-CoA mutase  39.27 
 
 		 709 aa  422  1e-116  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.172259  n/a   
 
 
-
 
NC_007643  Rru_A2479  methylmalonyl-CoA mutase  39.66 
 
 		 732 aa  419  1e-116  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_012793  GWCH70_2294  methylmalonyl-CoA mutase  38.68 
 
 		 731 aa  419  1e-116  Geobacillus sp. WCH70  Bacteria  normal  0.895743  n/a   
 
 
-
 
NC_007908  Rfer_2805  methylmalonyl-CoA mutase  37.26 
 
 		 719 aa  420  1e-116  Rhodoferax ferrireducens T118  Bacteria  normal  0.147831  n/a   
 
 
-
 
NC_007925  RPC_1760  methylmalonyl-CoA mutase  38.59 
 
 		 718 aa  422  1e-116  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  0.226069 
 
 
-
 
NC_008048  Sala_1221  methylmalonyl-CoA mutase  40.66 
 
 		 715 aa  419  1e-116  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.584735  normal  1 
 
 
-
 
NC_013037  Dfer_5804  methylmalonyl-CoA mutase  37.38 
 
 		 972 aa  419  1e-116  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.256305  normal  0.17905 
 
 
-
 
NC_011353  ECH74115_4213  methylmalonyl-CoA mutase  39.27 
 
 		 714 aa  422  1e-116  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009800  EcHS_A3075  methylmalonyl-CoA mutase  39.42 
 
 		 714 aa  420  1e-116  Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_2383  methylmalonyl-CoA mutase  37.8 
 
 		 718 aa  421  1e-116  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009801  EcE24377A_3244  methylmalonyl-CoA mutase  39.27 
 
 		 714 aa  420  1e-116  Escherichia coli E24377A  Bacteria  normal  0.98625  n/a   
 
 
-
 
CP001509  ECD_02748  methylmalonyl-CoA mutase  39.27 
 
 		 714 aa  419  9.999999999999999e-116  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
CP001637  EcDH1_0776  methylmalonyl-CoA mutase, large subunit  39.12 
 
 		 714 aa  417  9.999999999999999e-116  Escherichia coli DH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013730  Slin_6640  methylmalonyl-CoA mutase, large subunit  37.87 
 
 		 724 aa  416  9.999999999999999e-116  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  0.70273 
 
 
-
 
NC_012892  B21_02711  hypothetical protein  39.27 
 
 		 714 aa  419  9.999999999999999e-116  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
NC_007778  RPB_3538  methylmalonyl-CoA mutase  38.75 
 
 		 736 aa  417  9.999999999999999e-116  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.162308  normal  0.256268 
 
 
-
 
NC_007802  Jann_3367  methylmalonyl-CoA mutase  38.06 
 
 		 709 aa  416  9.999999999999999e-116  Jannaschia sp. CCS1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007958  RPD_1927  methylmalonyl-CoA mutase  38.75 
 
 		 719 aa  417  9.999999999999999e-116  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.273596  normal  0.727114 
 
 
-
 
NC_007964  Nham_2638  methylmalonyl-CoA mutase  38.56 
 
 		 720 aa  418  9.999999999999999e-116  Nitrobacter hamburgensis X14  Bacteria  normal  1  n/a   
 
 
-
 
NC_010524  Lcho_2697  methylmalonyl-CoA mutase  38.09 
 
 		 720 aa  416  9.999999999999999e-116  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.20812 
 
 
-
 
NC_013159  Svir_05680  methylmalonyl-CoA mutase  39.19 
 
 		 726 aa  416  9.999999999999999e-116  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008639  Cpha266_1164  methylmalonyl-CoA mutase  37.93 
 
 		 713 aa  416  9.999999999999999e-116  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.197015  n/a   
 
 
-
 
NC_008825  Mpe_A1014  methylmalonyl-CoA mutase  38.46 
 
 		 719 aa  417  9.999999999999999e-116  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  0.856859 
 
 
-
 
NC_010468  EcolC_0793  methylmalonyl-CoA mutase  39.27 
 
 		 714 aa  419  9.999999999999999e-116  Escherichia coli ATCC 8739  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010498  EcSMS35_3053  methylmalonyl-CoA mutase  39.27 
 
 		 714 aa  418  9.999999999999999e-116  Escherichia coli SMS-3-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010803  Clim_0868  methylmalonyl-CoA mutase  37.77 
 
 		 715 aa  415  1e-114  Chlorobium limicola DSM 245  Bacteria  normal  1  n/a   
 
 
-
 
NC_009523  RoseRS_0545  methylmalonyl-CoA mutase  39.53 
 
 		 740 aa  414  1e-114  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008044  TM1040_1865  methylmalonyl-CoA mutase  39.91 
 
 		 661 aa  414  1e-114  Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_2039  methylmalonyl-CoA mutase  38.53 
 
 		 719 aa  413  1e-114  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011371  Rleg2_6511  methylmalonyl-CoA mutase  39.62 
 
 		 712 aa  415  1e-114  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011666  Msil_3784  methylmalonyl-CoA mutase, large subunit  40.03 
 
 		 736 aa  413  1e-114  Methylocella silvestris BL2  Bacteria  n/a    normal  0.362344 
 
 
-
 
NC_013522  Taci_0288  methylmalonyl-CoA mutase, large subunit  45.21 
 
 		 559 aa  415  1e-114  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  1  n/a   
 
 
-
 
NC_010571  Oter_3304  methylmalonyl-CoA mutase, large subunit  38.8 
 
 		 719 aa  415  1e-114  Opitutus terrae PB90-1  Bacteria  decreased coverage  0.00679496  normal  0.683271 
 
 
-
 
NC_009720  Xaut_4731  methylmalonyl-CoA mutase  41.19 
 
 		 718 aa  411  1e-113  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  0.38651 
 
 
-
 
NC_013411  GYMC61_0279  methylmalonyl-CoA mutase  38.68 
 
 		 731 aa  412  1e-113  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013510  Tcur_2505  methylmalonyl-CoA mutase, large subunit  40.06 
 
 		 736 aa  410  1e-113  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000422516  n/a   
 
 
-
 
NC_007948  Bpro_2161  methylmalonyl-CoA mutase  37.52 
 
 		 723 aa  410  1e-113  Polaromonas sp. JS666  Bacteria  normal  0.385791  normal  0.481947 
 
 
-
 
NC_013093  Amir_6418  methylmalonyl-CoA mutase  40.06 
 
 		 729 aa  411  1e-113  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_007406  Nwi_2238  methylmalonyl-CoA mutase  37.77 
 
 		 722 aa  407  1.0000000000000001e-112  Nitrobacter winogradskyi Nb-255  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009767  Rcas_3872  methylmalonyl-CoA mutase  39.09 
 
 		 740 aa  406  1.0000000000000001e-112  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.231489  normal  0.125312 
 
 
-
 
NC_009718  Fnod_1752  methylmalonyl-CoA mutase, large subunit  43.85 
 
 		 554 aa  409  1.0000000000000001e-112  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011662  Tmz1t_3486  methylmalonyl-CoA mutase  37.81 
 
 		 721 aa  409  1.0000000000000001e-112  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_013757  Gobs_4373  methylmalonyl-CoA mutase, large subunit  39.54 
 
 		 735 aa  409  1.0000000000000001e-112  Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_013235  Namu_5166  methylmalonyl-CoA mutase  40.12 
 
 		 724 aa  408  1.0000000000000001e-112  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_4573  methylmalonyl-CoA mutase  39.94 
 
 		 720 aa  407  1.0000000000000001e-112  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_011988  Avi_5687  methylmalonyl-CoA mutase  36.86 
 
 		 712 aa  402  1e-111  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
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