| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2127 |
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| Symbol | |
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| ID | 7973813 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2270639 |
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| End bp | 2272801 |
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| Gene Length | 2163 bp |
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| Protein Length | 720 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644792714 |
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| Product | methylmalonyl-CoA mutase |
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| Protein accession | YP_002944028 |
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| Protein GI | 239815118 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.063815 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAGCA AACCCGAACC CACCTTCAAG CCGGCCAACC TCGACGACTG GGCCAAAGCC
GCCGCCAAGT CGGCACCGGG CGGCGACCTG GGCGCGCTCA ACTGGCTCAC GCCGGACGGC
ATCACGGTGA AGCCGCTCTA TACCGCGGCC GACCTGCAGG GCCTCAAGTA CACCGACACG
CTGCCCGGCT TCGAGCCCTA CCTGCGCGGC CCACAGGCCA CCATGTACGC GGTGCGGCCC
TGGACCATCC GCCAGTACGC GGGCTTCTCG ACCGCCGAGG AATCGAACGC CTTCTACCGC
AAGGCGCTGG CCGCCGGCGG GCAGGGCGTG AGCGTGGCCT TCGACCTGGC CACCCACCGC
GGCTACGACA GCGACCATCC GCGCGTGACC GGCGACGTCG GCAAGGCCGG CGTGGCCATC
GATTCGGTCG AGGACATGAA GATCCTGTTC GACCAGATCC CGCTCGACAA GGTGAGCGTG
TCCATGACCA TGAACGGCGC CGTGCTGCCG GTGCTCGCGG GCTACGTGGT CGCGGCCGAA
GAGCAGGGCG TGAGCCAGGA CCAGCTGAGC GGAACCATTC AGAACGACAT CCTCAAGGAG
TTCATGGTCC GCAACACCTA CATCTTCCCG CCCGCGCCGA GCATGCGGAT CATCGGCGAC
ATCATCGAGT ACACGGCGCA GAAGATGCCC AAGTTCAACT CGATCTCGAT CAGCGGCTAC
CACATGCAGG AAGCCGGCGC CAACCAGGCG CTGGAGCTGG CCTTCACGCT GGCCGACGGC
AAGGAGTACG TGAAGACCGC GCTGGCCAAG GGCCTGGACG TCGACGGCTT TGCCGGGCGC
CTGAGCTTCT TCTGGGCCAT CGGCATGAAC TTCTATCTCG AAGTGGCCAA GATGCGCGCC
GCGCGCCTCT TGTGGTGCCG CATCATGAAA GAGTTCAACC CCAAGAACCC CAAGAGCCTG
ATGCTGCGCA CGCACTGCCA GACCTCGGGC TGGAGCCTGA CCGAGCAGGA CCCGTACAAC
AACATCGTGC GCACCACCAT CGAGGCCATG GCCGCGGTCT TCGGCGGCAC GCAGAGCCTG
CACACCAACG CGCTCGACGA AGCGATTGCG CTGCCTACCG AGTTCAGCGC CCGCATCGCG
CGCAACACGC AGCTCATCAT CCAGGAAGAG ACGCACATCA CGAACGTGGT CGACCCCTGG
GCCGGCAGCT ACATGATGGA GAAGCTCACG CAGGACATGG CCGACGCGGC CTGGGCCATC
ATCGAGGAAG TCGAGGCCAT GGGCGGCATG ACCAAGGCGG TGGACAGCGG CTGGGCCAAG
CTCAAGATCG AAGCGGCCGC CGCCGAGAAG CAGGCGCGCA TCGACTCGGG CAAGGACGTG
ATCGTGGGCG TCAACAAGTA CAAGCTCAAG ACCGAGGACG CGATCGACAG CCTCTCCATC
GACAACGTGA TGGTGCGCGA GCAGCAGGTG GCGCGCCTGC AGAAGATCCG CGCCTCGCGC
GACGGCGCCA AGGTGCAGGC CGCGCTCGAC GCGCTGACCG AAGCCGCCGA AAGCAACACC
GGCAACCTGC TGGCCCTGAG CATCGATGCG GTGCGCGCGC GCGCCACTGT CGGCGAGATT
TCCGACGCCC TCGAAAAATC ATTCGGCCGC CATCGGGCCG ACACGCAAAA GGTGACCGGC
GTGTACGCAG CTGCCTACGA CTCGGCCGAA GGCTGGGAAA CGCTCAAGAC CGAAATCAAC
GCCTTCGCCG AGGAACAGGG CCGCCGCCCG CGCGTGATGA TCTCCAAGCT GGGGCAGGAC
GGGCACGACC GCGGCGCCAA GGTGGTGGCC ACGGCGTTTG CAGACCTGGG CTTCGACGTG
GACATGGGGC CGCTGTTCCA GACGCCCGAG GAATGCGCGC GGCAGGCCAT CGAGAACGAC
GTGCACGCGG TGGGCGTGAG CACCCTCGCA GCCGGCCACA AGACGCTGGT GCCCGCCATC
ATCAACGAGT TGAAGAAGCA GGGCGCCGAC GACATCATCG TGTTCGTCGG CGGCGTGATT
CCGCGGCAGG ACTACGACTT TCTCTACGAA GCCGGCGTCA AGGGCATCTA CGGTCCGGGC
ACGCCCATCC CGGCCAGCGC CAAGGACGTG CTGGAGCAGA TCCGCGCGGC GGTTTCGGCC
TGA
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| Protein sequence | MSSKPEPTFK PANLDDWAKA AAKSAPGGDL GALNWLTPDG ITVKPLYTAA DLQGLKYTDT
LPGFEPYLRG PQATMYAVRP WTIRQYAGFS TAEESNAFYR KALAAGGQGV SVAFDLATHR
GYDSDHPRVT GDVGKAGVAI DSVEDMKILF DQIPLDKVSV SMTMNGAVLP VLAGYVVAAE
EQGVSQDQLS GTIQNDILKE FMVRNTYIFP PAPSMRIIGD IIEYTAQKMP KFNSISISGY
HMQEAGANQA LELAFTLADG KEYVKTALAK GLDVDGFAGR LSFFWAIGMN FYLEVAKMRA
ARLLWCRIMK EFNPKNPKSL MLRTHCQTSG WSLTEQDPYN NIVRTTIEAM AAVFGGTQSL
HTNALDEAIA LPTEFSARIA RNTQLIIQEE THITNVVDPW AGSYMMEKLT QDMADAAWAI
IEEVEAMGGM TKAVDSGWAK LKIEAAAAEK QARIDSGKDV IVGVNKYKLK TEDAIDSLSI
DNVMVREQQV ARLQKIRASR DGAKVQAALD ALTEAAESNT GNLLALSIDA VRARATVGEI
SDALEKSFGR HRADTQKVTG VYAAAYDSAE GWETLKTEIN AFAEEQGRRP RVMISKLGQD
GHDRGAKVVA TAFADLGFDV DMGPLFQTPE ECARQAIEND VHAVGVSTLA AGHKTLVPAI
INELKKQGAD DIIVFVGGVI PRQDYDFLYE AGVKGIYGPG TPIPASAKDV LEQIRAAVSA
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