More than 300 homologs were found in PanDaTox collection
for query gene Caci_1226 on replicon NC_013131
Organism: Catenulispora acidiphila DSM 44928



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_011757  Mchl_0334  methylmalonyl-CoA mutase, large subunit  64.84 
 
 		 688 aa  842    Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009921  Franean1_1034  methylmalonyl-CoA mutase, large subunit  74.92 
 
 		 666 aa  987    Frankia sp. EAN1pec  Bacteria  normal  0.488774  normal  0.762762 
 
 
-
 
NC_007493  RSP_0961  methylmalonyl-CoA mutase  63.83 
 
 		 652 aa  810    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007643  Rru_A3062  methylmalonyl-CoA mutase  67.65 
 
 		 671 aa  891    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_009952  Dshi_2855  methylmalonyl-CoA mutase  63.73 
 
 		 657 aa  828    Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007777  Francci3_2169  methylmalonyl-CoA mutase  69.71 
 
 		 692 aa  952    Frankia sp. CcI3  Bacteria  normal  0.485789  normal  0.751366 
 
 
-
 
NC_007802  Jann_0797  methylmalonyl-CoA mutase  63.89 
 
 		 654 aa  833    Jannaschia sp. CCS1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009720  Xaut_1197  methylmalonyl-CoA mutase, large subunit  64.36 
 
 		 657 aa  842    Xanthobacter autotrophicus Py2  Bacteria  normal  0.282186  normal  1 
 
 
-
 
NC_009719  Plav_1625  methylmalonyl-CoA mutase, large subunit  66.31 
 
 		 667 aa  865    Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009428  Rsph17025_3008  methylmalonyl-CoA mutase, large subunit  63.68 
 
 		 652 aa  806    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.842553  normal  0.248307 
 
 
-
 
NC_008043  TM1040_3106  methylmalonyl-CoA mutase  64.2 
 
 		 661 aa  858    Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010505  Mrad2831_1106  methylmalonyl-CoA mutase, large subunit  64.72 
 
 		 680 aa  833    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_0290  methylmalonyl-CoA mutase, large subunit  64.69 
 
 		 688 aa  842    Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.515512 
 
 
-
 
NC_013739  Cwoe_4193  methylmalonyl-CoA mutase, large subunit  66.82 
 
 		 670 aa  864    Conexibacter woesei DSM 14684  Bacteria  normal  0.669168  normal  0.90036 
 
 
-
 
NC_011894  Mnod_0038  methylmalonyl-CoA mutase, large subunit  64.04 
 
 		 690 aa  838    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.579469  n/a   
 
 
-
 
NC_009953  Sare_4003  methylmalonyl-CoA mutase, large subunit  71.06 
 
 		 685 aa  883    Salinispora arenicola CNS-205  Bacteria  normal  0.446619  hitchhiker  0.000372138 
 
 
-
 
NC_013757  Gobs_4128  methylmalonyl-CoA mutase, large subunit  75.23 
 
 		 667 aa  977    Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_010725  Mpop_0366  methylmalonyl-CoA mutase, large subunit  64.54 
 
 		 688 aa  841    Methylobacterium populi BJ001  Bacteria  normal  0.560359  normal  1 
 
 
-
 
NC_008687  Pden_3875  methylmalonyl-CoA mutase, large subunit  65.9 
 
 		 688 aa  843    Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008699  Noca_1772  methylmalonyl-CoA mutase  72.5 
 
 		 680 aa  973    Nocardioides sp. JS614  Bacteria  normal  0.292142  n/a   
 
 
-
 
NC_013124  Afer_0223  methylmalonyl-CoA mutase, large subunit  60.64 
 
 		 647 aa  726    Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.784456  n/a   
 
 
-
 
NC_009380  Strop_3621  methylmalonyl-CoA mutase, large subunit  70.92 
 
 		 668 aa  894    Salinispora tropica CNB-440  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009049  Rsph17029_2621  methylmalonyl-CoA mutase, large subunit  63.53 
 
 		 652 aa  807    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_0036  methylmalonyl-CoA mutase, large subunit  64.39 
 
 		 675 aa  840    Methylobacterium sp. 4-46  Bacteria  normal  0.0637775  decreased coverage  0.00272797 
 
 
-
 
NC_013131  Caci_1226  methylmalonyl-CoA mutase, large subunit  100 
 
 		 672 aa  1358    Catenulispora acidiphila DSM 44928  Bacteria  normal  0.6728  normal  0.0673448 
 
 
-
 
NC_010338  Caul_0836  methylmalonyl-CoA mutase, large subunit  64.21 
 
 		 662 aa  847    Caulobacter sp. K31  Bacteria  normal  0.733808  normal  0.66979 
 
 
-
 
NC_009943  Dole_0079  methylmalonyl-CoA mutase  41.39 
 
 		 706 aa  457  1e-127  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.373309  n/a   
 
 
-
 
NC_009049  Rsph17029_0867  methylmalonyl-CoA mutase  40.61 
 
 		 709 aa  439  9.999999999999999e-123  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.134958  normal  1 
 
 
-
 
NC_007493  RSP_2192  methylmalonyl-CoA mutase  40.31 
 
 		 709 aa  436  1e-121  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.172259  n/a   
 
 
-
 
NC_009511  Swit_2891  methylmalonyl-CoA mutase  39.3 
 
 		 716 aa  436  1e-121  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  0.17991 
 
 
-
 
NC_011992  Dtpsy_1849  methylmalonyl-CoA mutase  39.05 
 
 		 720 aa  438  1e-121  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_2383  methylmalonyl-CoA mutase  39.91 
 
 		 718 aa  437  1e-121  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007794  Saro_0811  methylmalonyl-CoA mutase  39.59 
 
 		 714 aa  434  1e-120  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.251875  n/a   
 
 
-
 
NC_008044  TM1040_1865  methylmalonyl-CoA mutase  40.31 
 
 		 661 aa  435  1e-120  Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008782  Ajs_2040  methylmalonyl-CoA mutase  38.74 
 
 		 720 aa  434  1e-120  Acidovorax sp. JS42  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012791  Vapar_2127  methylmalonyl-CoA mutase  39.67 
 
 		 720 aa  435  1e-120  Variovorax paradoxus S110  Bacteria  normal  0.063815  n/a   
 
 
-
 
NC_007298  Daro_4006  methylmalonyl-CoA mutase  38.38 
 
 		 716 aa  432  1e-119  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007802  Jann_3367  methylmalonyl-CoA mutase  39.27 
 
 		 709 aa  431  1e-119  Jannaschia sp. CCS1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008752  Aave_2510  methylmalonyl-CoA mutase  38.96 
 
 		 722 aa  429  1e-119  Acidovorax citrulli AAC00-1  Bacteria  normal  1  normal  0.178476 
 
 
-
 
NC_010002  Daci_3753  methylmalonyl-CoA mutase  39.94 
 
 		 738 aa  432  1e-119  Delftia acidovorans SPH-1  Bacteria  normal  0.801598  normal  0.879758 
 
 
-
 
NC_011059  Paes_0875  methylmalonyl-CoA mutase, large subunit  38.62 
 
 		 1081 aa  427  1e-118  Prosthecochloris aestuarii DSM 271  Bacteria  normal  1  normal  0.036821 
 
 
-
 
NC_004310  BR1190  methylmalonyl-CoA mutase  40.35 
 
 		 712 aa  427  1e-118  Brucella suis 1330  Bacteria  normal  0.942727  n/a   
 
 
-
 
NC_009667  Oant_2001  methylmalonyl-CoA mutase  39.87 
 
 		 714 aa  426  1e-118  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_007908  Rfer_2805  methylmalonyl-CoA mutase  38.69 
 
 		 719 aa  426  1e-118  Rhodoferax ferrireducens T118  Bacteria  normal  0.147831  n/a   
 
 
-
 
NC_010814  Glov_3260  methylmalonyl-CoA mutase, large subunit  39.66 
 
 		 713 aa  427  1e-118  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_009441  Fjoh_0014  methylmalonyl-CoA mutase  38.43 
 
 		 711 aa  427  1e-118  Flavobacterium johnsoniae UW101  Bacteria  normal  0.185174  n/a   
 
 
-
 
NC_013411  GYMC61_0279  methylmalonyl-CoA mutase  40.54 
 
 		 731 aa  427  1e-118  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010831  Cphamn1_1173  methylmalonyl-CoA mutase, large subunit  38.8 
 
 		 1106 aa  428  1e-118  Chlorobium phaeobacteroides BS1  Bacteria  normal  1  decreased coverage  0.00593374 
 
 
-
 
NC_013522  Taci_0288  methylmalonyl-CoA mutase, large subunit  46.44 
 
 		 559 aa  424  1e-117  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  1  n/a   
 
 
-
 
NC_009767  Rcas_3872  methylmalonyl-CoA mutase  40.22 
 
 		 740 aa  424  1e-117  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.231489  normal  0.125312 
 
 
-
 
NC_009428  Rsph17025_2300  methylmalonyl-CoA mutase  40.28 
 
 		 709 aa  423  1e-117  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009523  RoseRS_0545  methylmalonyl-CoA mutase  40.38 
 
 		 740 aa  422  1e-116  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009719  Plav_1702  methylmalonyl-CoA mutase  40.38 
 
 		 718 aa  421  1e-116  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  0.0321557 
 
 
-
 
NC_007948  Bpro_2161  methylmalonyl-CoA mutase  39.45 
 
 		 723 aa  421  1e-116  Polaromonas sp. JS666  Bacteria  normal  0.385791  normal  0.481947 
 
 
-
 
NC_014165  Tbis_1920  methylmalonyl-CoA mutase large subunit  40 
 
 		 720 aa  419  1e-116  Thermobispora bispora DSM 43833  Bacteria  normal  0.0552222  normal  0.617547 
 
 
-
 
NC_008254  Meso_0856  methylmalonyl-CoA mutase  39.31 
 
 		 714 aa  419  1e-116  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008687  Pden_3681  methylmalonyl-CoA mutase  39.75 
 
 		 714 aa  420  1e-116  Paracoccus denitrificans PD1222  Bacteria  normal  0.542374  normal  1 
 
 
-
 
NC_013037  Dfer_5804  methylmalonyl-CoA mutase  37.81 
 
 		 972 aa  422  1e-116  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.256305  normal  0.17905 
 
 
-
 
NC_008786  Veis_3398  methylmalonyl-CoA mutase  38.97 
 
 		 731 aa  420  1e-116  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.526303  normal  1 
 
 
-
 
NC_008825  Mpe_A1014  methylmalonyl-CoA mutase  38.84 
 
 		 719 aa  422  1e-116  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  0.856859 
 
 
-
 
NC_009952  Dshi_0726  methylmalonyl-CoA mutase  39.59 
 
 		 712 aa  422  1e-116  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.999011  normal  1 
 
 
-
 
NC_009379  Pnuc_0910  methylmalonyl-CoA mutase  39.6 
 
 		 739 aa  420  1e-116  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.736612  n/a   
 
 
-
 
NC_014230  CA2559_07125  methylmalonyl-CoA mutase  38.8 
 
 		 707 aa  419  9.999999999999999e-116  Croceibacter atlanticus HTCC2559  Bacteria  normal  1  n/a   
 
 
-
 
NC_013757  Gobs_4373  methylmalonyl-CoA mutase, large subunit  40.68 
 
 		 735 aa  416  9.999999999999999e-116  Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_008025  Dgeo_1320  methylmalonyl-CoA mutase  39.33 
 
 		 722 aa  418  9.999999999999999e-116  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012793  GWCH70_2294  methylmalonyl-CoA mutase  39.37 
 
 		 731 aa  416  9.999999999999999e-116  Geobacillus sp. WCH70  Bacteria  normal  0.895743  n/a   
 
 
-
 
NC_013595  Sros_3188  Methylmalonyl-CoA mutase  40.87 
 
 		 725 aa  418  9.999999999999999e-116  Streptosporangium roseum DSM 43021  Bacteria  normal  0.36577  normal  0.670701 
 
 
-
 
NC_013169  Ksed_22170  methylmalonyl-CoA mutase  39.26 
 
 		 754 aa  418  9.999999999999999e-116  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.366718  normal  0.398515 
 
 
-
 
NC_007512  Plut_1292  methylmalonyl-CoA mutase  38.78 
 
 		 714 aa  415  1e-114  Chlorobium luteolum DSM 273  Bacteria  normal  1  normal  0.816153 
 
 
-
 
NC_009616  Tmel_1860  methylmalonyl-CoA mutase, large subunit  45.29 
 
 		 559 aa  413  1e-114  Thermosipho melanesiensis BI429  Bacteria  decreased coverage  0.0000937746  n/a   
 
 
-
 
NC_010803  Clim_0868  methylmalonyl-CoA mutase  38.64 
 
 		 715 aa  415  1e-114  Chlorobium limicola DSM 245  Bacteria  normal  1  n/a   
 
 
-
 
NC_011662  Tmz1t_3486  methylmalonyl-CoA mutase  38.53 
 
 		 721 aa  414  1e-114  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_013730  Slin_6640  methylmalonyl-CoA mutase, large subunit  38.08 
 
 		 724 aa  414  1e-114  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  0.70273 
 
 
-
 
NC_008639  Cpha266_1164  methylmalonyl-CoA mutase  39.72 
 
 		 713 aa  416  1e-114  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.197015  n/a   
 
 
-
 
NC_009718  Fnod_1752  methylmalonyl-CoA mutase, large subunit  45.49 
 
 		 554 aa  412  1e-114  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011371  Rleg2_6511  methylmalonyl-CoA mutase  39.75 
 
 		 712 aa  412  1e-113  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007514  Cag_1223  methylmalonyl-CoA mutase  38.74 
 
 		 712 aa  409  1e-113  Chlorobium chlorochromatii CaD3  Bacteria  normal  1  n/a   
 
 
-
 
NC_011060  Ppha_1167  methylmalonyl-CoA mutase  38.52 
 
 		 712 aa  412  1e-113  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.169366  n/a   
 
 
-
 
NC_007643  Rru_A2479  methylmalonyl-CoA mutase  39.06 
 
 		 732 aa  411  1e-113  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_013093  Amir_6418  methylmalonyl-CoA mutase  40.31 
 
 		 729 aa  410  1e-113  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_011353  ECH74115_4213  methylmalonyl-CoA mutase  39.38 
 
 		 714 aa  410  1e-113  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  1  normal  1 
 
 
-
 
CP001509  ECD_02748  methylmalonyl-CoA mutase  39.38 
 
 		 714 aa  407  1.0000000000000001e-112  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
NC_013159  Svir_05680  methylmalonyl-CoA mutase  39.1 
 
 		 726 aa  408  1.0000000000000001e-112  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014211  Ndas_5545  methylmalonyl-CoA mutase, large subunit  40.87 
 
 		 738 aa  407  1.0000000000000001e-112  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012892  B21_02711  hypothetical protein  39.38 
 
 		 714 aa  407  1.0000000000000001e-112  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
NC_007925  RPC_1760  methylmalonyl-CoA mutase  38.44 
 
 		 718 aa  407  1.0000000000000001e-112  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  0.226069 
 
 
-
 
NC_010524  Lcho_2697  methylmalonyl-CoA mutase  38.6 
 
 		 720 aa  406  1.0000000000000001e-112  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.20812 
 
 
-
 
NC_008576  Mmc1_0388  methylmalonyl-CoA mutase  39.94 
 
 		 714 aa  408  1.0000000000000001e-112  Magnetococcus sp. MC-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_4573  methylmalonyl-CoA mutase  40.47 
 
 		 720 aa  406  1.0000000000000001e-112  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_010498  EcSMS35_3053  methylmalonyl-CoA mutase  39.38 
 
 		 714 aa  406  1.0000000000000001e-112  Escherichia coli SMS-3-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009800  EcHS_A3075  methylmalonyl-CoA mutase  39.53 
 
 		 714 aa  408  1.0000000000000001e-112  Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
NC_011988  Avi_5687  methylmalonyl-CoA mutase  39.53 
 
 		 712 aa  407  1.0000000000000001e-112  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009801  EcE24377A_3244  methylmalonyl-CoA mutase  39.38 
 
 		 714 aa  407  1.0000000000000001e-112  Escherichia coli E24377A  Bacteria  normal  0.98625  n/a   
 
 
-
 
NC_010468  EcolC_0793  methylmalonyl-CoA mutase  39.38 
 
 		 714 aa  407  1.0000000000000001e-112  Escherichia coli ATCC 8739  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011831  Cagg_1349  methylmalonyl-CoA mutase  40.38 
 
 		 733 aa  406  1.0000000000000001e-112  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0148615  unclonable  0.0000000469192 
 
 
-
 
CP001637  EcDH1_0776  methylmalonyl-CoA mutase, large subunit  39.22 
 
 		 714 aa  405  1e-111  Escherichia coli DH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_002950  PG1657  methylmalonyl-CoA mutase  36.81 
 
 		 715 aa  405  1e-111  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.387473 
 
 
-
 
NC_007964  Nham_2638  methylmalonyl-CoA mutase  37.87 
 
 		 720 aa  404  1e-111  Nitrobacter hamburgensis X14  Bacteria  normal  1  n/a   
 
 
-
 
NC_012852  Rleg_6098  methylmalonyl-CoA mutase  39.27 
 
 		 712 aa  404  1e-111  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.23929  normal  0.554736 
 
 
-
 
NC_010531  Pnec_0932  methylmalonyl-CoA mutase  38.28 
 
 		 724 aa  405  1e-111  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  1  normal  1 
 
 
-
 
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