Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2697 |
Symbol | |
ID | 6162375 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2967036 |
End bp | 2969198 |
Gene Length | 2163 bp |
Protein Length | 720 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641665474 |
Product | methylmalonyl-CoA mutase |
Protein accession | YP_001791727 |
Protein GI | 171059378 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit [COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) |
TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain [TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.20812 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTCAGT CCAAAGAATT TCAGTCCGCC ACGCTCGAAC AGTGGGCCAA GGCGGCTGCC AAGTCCGCTC CCGGCGGTGA TGTGTCGGCA CTGAACTGGC ACACGCCCGA GGGCATCGTC GTCAAGCCGC TGTACACCGC GGCCGACACC GCCGACCTGC CCTATGCGGA CACGCTGCCG GGCTTCGAGC CCTTCCTGCG CGGCCCGCAG GCCACGATGT ACGCGGTGCG GCCGTGGACC ATCCGCCAGT ACGCCGGTTT CTCGACCGCC GAAGAATCGA ACGCCTTCTA CCGCAAGGCG CTGGCTGCCG GCGGGCAGGG CGTGTCGGTC GCCTTCGACC TGGCCACGCA CCGCGGCTAT GACAGCGATC ACCCGCGCGT GACCGGCGAC GTCGGCAAGG CCGGCGTGGC GATCGATTCG GTCGAGGACA TGAAGATCCT GTTCGACCAG ATCCCGCTCG ACAAGGTGTC GGTCTCGATG ACGATGAACG GTGCCGTGCT GCCGGTGCTG GCCGGCTACG TGGTGGCGGC CGAAGAGCAG GGCGTGAGCC AGGACAAGTT GAGCGGCACG ATCCAGAACG ACATCCTCAA GGAGTTCATG GTCCGCAACA CCTACATCTA CGGCCCCGAG CCGTCGATGC GGATCATCGG CGACATCATC GAGTACACGG CGCAGAACAT GCCGAAGTTC AACTCGATCT CGATCTCCGG CTATCACATG CAGGAAGCCG GCGCCAACCA GGCGCTCGAA CTCGCCTTCA CGCTCGCCGA CGGCAAGGAG TACGTCAAGA CCGCCATCGC CAAGGGCATG GACGTCGACG ACTTCGCCGG GCGCCTCTCG TTCTTCTGGG CGATCGGGAT GAACTTCTAT CTCGAGATCG CCAAGATGCG CGCGGCACGT CTCTTGTGGA CCCGCATCAT GAAAGGCTTC GACGCCAAGA AGCCCAAGAG CCTGATGCTG CGCACGCACT GCCAGACCAG CGGCTGGTCG CTGACCGAGC AGGATCCGTA CAACAACGTC GTGCGCACCG CCATCGAGGC GATGGCCGCG GTCTTCGGCG GCACGCAGAG CCTGCACACC AACGCCTTCG ACGAGGCCAT CGCGCTGCCC ACCGATACCA GCGCCCGCAT CGCCCGCAAC ACCCAGCTGA TCATCCAGGA AGAGACCCAC ATCACCAGCG TGGTCGACCC CTGGGCCGGC AGCTACATGA TGGAGAAGCT GACGCAGGAC ATGGCCGACA AGGCCTGGTC CATCATCGAG GAAGTCGAGG CGATGGGCGG CATGACCAAG GCGGTCGATT CGGGTTGGGC CAAGCTCAAG ATCGAAGCCA GTGCGGCCGA GAAGCAGGCC CGCATCGACT CGGGCCGCGA CGTCATCGTC GGCGTCAACA AGTACAAGCT GGCCAAGGAA GACGCGGTCG AGATCCGCGA GGTCGACAAC GTCGCCGTGC GGCTGTCGCA GATCGAGCGC CTGAAGGCCA TCAAGGCCGC ACGCGACACC GCCGCCGTCA ACGCGGCCCT GCAGGCGCTG ACCGACGCGG CCGCCGCTGC CAACGGCAAC CTGCTCGACC TGGCGATCAA AGCGATCCGC CTGCGCGCCA CGGTCGGCGA GGTCAGCGAT GCGCTCGAGA AGGTGTTCGG CCGCCACCGC GCCGACATCC AGAAGGTCAC CGGCGTCTAC GCCGCGGCCT ACGACTCGGC CGAAGGCTGG GAGAAGCTGC AGACCGAGAT CGCCGCCTTC GCCGAGGAAC AGGGCCGCCG CCCGCGCGTG ATGATCGCCA AGCTCGGCCA GGACGGTCAC GACCGTGGCG CCAAGGTGGT GGCCACGGCC TACGCCGACC TCGGCTTCGA CGTCGACATG GGACCGCTGT TCCAGACCCC CGAAGAATGC GCGCGCCAGG CGATCGAGAA CGACGTGCAC GCGGTGGGTG TCTCCACGCT CGCAGCCGGC CACAAGACGC TGGTGCCGGC CATCATCGCG GCGCTGAAAG ATCAGGGCGC CGACGACATC ATCGTGTTCG TCGGCGGCGT GATCCCGGCG CAGGACTACG GCTACCTGTA CGACGCCGGC GTGAAGGGCA TCTTCGGCCC CGGCACGCCG ATTCCGGCGT CGGCCAAGAC GGTGCTCGAG CAGATCCGCG AGCGGTTCAG CGCAGCGGCC TGA
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Protein sequence | MSQSKEFQSA TLEQWAKAAA KSAPGGDVSA LNWHTPEGIV VKPLYTAADT ADLPYADTLP GFEPFLRGPQ ATMYAVRPWT IRQYAGFSTA EESNAFYRKA LAAGGQGVSV AFDLATHRGY DSDHPRVTGD VGKAGVAIDS VEDMKILFDQ IPLDKVSVSM TMNGAVLPVL AGYVVAAEEQ GVSQDKLSGT IQNDILKEFM VRNTYIYGPE PSMRIIGDII EYTAQNMPKF NSISISGYHM QEAGANQALE LAFTLADGKE YVKTAIAKGM DVDDFAGRLS FFWAIGMNFY LEIAKMRAAR LLWTRIMKGF DAKKPKSLML RTHCQTSGWS LTEQDPYNNV VRTAIEAMAA VFGGTQSLHT NAFDEAIALP TDTSARIARN TQLIIQEETH ITSVVDPWAG SYMMEKLTQD MADKAWSIIE EVEAMGGMTK AVDSGWAKLK IEASAAEKQA RIDSGRDVIV GVNKYKLAKE DAVEIREVDN VAVRLSQIER LKAIKAARDT AAVNAALQAL TDAAAAANGN LLDLAIKAIR LRATVGEVSD ALEKVFGRHR ADIQKVTGVY AAAYDSAEGW EKLQTEIAAF AEEQGRRPRV MIAKLGQDGH DRGAKVVATA YADLGFDVDM GPLFQTPEEC ARQAIENDVH AVGVSTLAAG HKTLVPAIIA ALKDQGADDI IVFVGGVIPA QDYGYLYDAG VKGIFGPGTP IPASAKTVLE QIRERFSAAA
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