| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0932 |
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| Symbol | |
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| ID | 6184277 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 808607 |
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| End bp | 810781 |
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| Gene Length | 2175 bp |
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| Protein Length | 724 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641671562 |
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| Product | methylmalonyl-CoA mutase |
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| Protein accession | YP_001797744 |
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| Protein GI | 171463631 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit
[COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 82 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTTCTA AAGAAAATAA TTCATGGCCA TCATTTCCAG ATGCCAATCT CGAAGCTTGG
AAAAAGTCGG CCCAGAAATC AGCACCTAGT GGTGATGTTG ATTCTTTGGG TTGGAAGACT
CCAGATGGAA TTCACTTAAA AGCATTGTAC ACATCATCGG ATATTGAAGG TCTAAATTAC
ACCGATACGT TGCCCGGATT TGAGCCATTT GTACGTGGAC CACAAGCAAC GATGTATTCA
GTGCGCCCAT GGAGTATTCG TCAATACGCA GGCTTTTCTA CAGCAGAGGA ATCTAATGCC
TTTTATCGCA AAGCATTAGA TGCGGGCGGT CAAGGTGTTT CTGTTGCTTT TGATTTAGCT
ACGCATCGTG GTTATGACTC AGACCATCCA CGCGTTACAG GTGACGTTGG TAAAGCGGGT
GTCGCGATTG ATTCTGTAGA AGATATGAAG ATCTTGTTTG ATGGCATTTC GTTAGACAAG
GTGTCCGTTT CAATGACAAT GAACGGGGCT GTGTTACCCG TGTTAGCTGG CTATATCGTT
GCAGGTGAAG AGCAAGGTGT TAAGCAGGAG CAGTTATCAG GAACTATTCA GAATGATATT
TTAAAAGAGT TCATGGTGCG TAATACCTAT ATTTACCCGC CAGAGCCATC AATGCGCATA
ATCGGCGACA TTATTGAGTA CACCGCCAAG CATATGCCCA AGTTCAACTC GATTTCGATT
TCGGGTTATC ACATGCAAGA GGCTGGCGCA AATCAAGTAT TGGAATTAGC TTTCACTTTG
GCTGACGGTA AAGAGTATGT AAAAACTGCG CTTGCAAAGG GATTGGATGT TGATGGCTTT
GCAGGCCGCC TATCTTTCTT TTTTGCCATA GGCATGAATT TCTATCTTGA AGTTGCGAAG
TTGCGTGCTG CACGTTTGTT GTGGTGGCGC ATTATGAAAT CCTTCGAGCC AAAGAATCCA
AAGTCACTAA TATTGCGTAC ACACTGCCAA ACATCAGGCT GGTCTTTAAC TGAACAAGAT
CCATATAACA ACGTGGTAAG AACTACGGTT GAGGCAATGG CTGCCGTATT TGGCGGCACG
CAGTCATTGC ACACTAACTC CCTGGACGAG GCAATTGCAT TGCCTTCTGA GTTCTCTAGC
CGTATTGCCC GTAATACCCA GCTAATTCTG CAGGAAGAAA CGCATATTCC GAGTGTGATC
GATCCATGGG CTGGTTCTTA CATGATGGAA AACCTCACTC AAGAGATGGC AGACAAAGCT
TGGGAAATTA TTCAAGAAGT AGAAGCCATG GGTGGCATGA CTAAGGCGGT TGAGAGCGGT
TGGGCTAAGC TGAAGATCGA AGCAGCTGCC GCTGAAAAAC AAGCCAAGAT TGACTCAGGC
TCTGATGTGA TTGTTGGCGT TAATAAATAC AAGCTTGGCA AAGAAGATCT TGTTGATGTG
TTGATGATCG ACAACGATAA AGTTCGCGAG AGTCAAGTTA CACGCTTGAA AGATATTAAA
GCTAAGCGTG ATTCACAAAA AGTACAAGCT GCATTAGAGG CATTAACAAA AGCTGCTGAA
GATAATTCTG GAAACTTATT GGAGTTGTCA GTCAATGCTA TTCGTCTACG TGCAACAGTA
GGCGAAGTTT CTGATGCATT AGAGAAAGTT TACGGGCGCC ATCGCGCCGA TACTCAAAAG
GTGACCGGTG TGTATGCAGT TGCCTATGAC TCAGCCAAGG GCTGGGCGAA ACTCCAAACA
GAAATTGCTG ACTTTGCTAA GGACTTTGGT CGTCGCCCCC GAGTGATGAT TGCTAAATTG
GGTCAAGATG GCCATGATCG TGGTGCAAAA GTTGTTGCTA CTGCCTATGC AGACTTGGGT
TTTGACGTCG ATATCGGCCC CTTATTCCAA ACGCCAGAAG AGTGTGCTCG CCAAGCAATT
GAAAACGACG TGCATGCTTT AGGAGTCTCA ACATTGGCGG CCGGTCATAA GACATTGGTG
CCAGCCATCA TTGCGGAATT GAAAAAACAG GGCTCAGACG ACATTATTGT GTTCGTTGGA
GGCGTTATTC CAAGACAGGA CTATGAGTTC CTATATGAAG CGGGTGTAAA GGGTATCTAC
GGTCCGGGCA CACCCATTCC AGTGTCAGCC AAGGATTTGC TCGAGCAAAT CCGTAAGTCT
GTTAAACCGG CTTAA
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| Protein sequence | MSSKENNSWP SFPDANLEAW KKSAQKSAPS GDVDSLGWKT PDGIHLKALY TSSDIEGLNY
TDTLPGFEPF VRGPQATMYS VRPWSIRQYA GFSTAEESNA FYRKALDAGG QGVSVAFDLA
THRGYDSDHP RVTGDVGKAG VAIDSVEDMK ILFDGISLDK VSVSMTMNGA VLPVLAGYIV
AGEEQGVKQE QLSGTIQNDI LKEFMVRNTY IYPPEPSMRI IGDIIEYTAK HMPKFNSISI
SGYHMQEAGA NQVLELAFTL ADGKEYVKTA LAKGLDVDGF AGRLSFFFAI GMNFYLEVAK
LRAARLLWWR IMKSFEPKNP KSLILRTHCQ TSGWSLTEQD PYNNVVRTTV EAMAAVFGGT
QSLHTNSLDE AIALPSEFSS RIARNTQLIL QEETHIPSVI DPWAGSYMME NLTQEMADKA
WEIIQEVEAM GGMTKAVESG WAKLKIEAAA AEKQAKIDSG SDVIVGVNKY KLGKEDLVDV
LMIDNDKVRE SQVTRLKDIK AKRDSQKVQA ALEALTKAAE DNSGNLLELS VNAIRLRATV
GEVSDALEKV YGRHRADTQK VTGVYAVAYD SAKGWAKLQT EIADFAKDFG RRPRVMIAKL
GQDGHDRGAK VVATAYADLG FDVDIGPLFQ TPEECARQAI ENDVHALGVS TLAAGHKTLV
PAIIAELKKQ GSDDIIVFVG GVIPRQDYEF LYEAGVKGIY GPGTPIPVSA KDLLEQIRKS
VKPA
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