Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_0910 |
Symbol | |
ID | 5051958 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | + |
Start bp | 903188 |
End bp | 905407 |
Gene Length | 2220 bp |
Protein Length | 739 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640471070 |
Product | methylmalonyl-CoA mutase |
Protein accession | YP_001155690 |
Protein GI | 145589093 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit [COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) |
TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain [TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.736612 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAATGCA ACAAAACAAT CAGGGAGTGC TTTGTGAGTT CAGACAAGAA AAGTTCATCA ACCAATCCAT GGCCATCATT TCCAGAAACG AATCTGGACG CTTGGAATAA ATCAGCGCAA AAATCTGCCC CTAATGGCGA CGTAGATAAG CTTGGTTGGA ATACACCTGA CGGTATTCAA TTAAAAGCCT TATACACCTC TGCAGATACA CAGGATCTGA ATTACACAAA TACATTGCCA GGATTCGAAC CTTTTGTACG CGGACCCCAA GCAACAATGT ATTCCGTGCG TCCATGGACG ATTCGTCAAT ACGCTGGATT TTCAACTGCT GAAGCATCAA ATGCTTTTTA CCGTGAAGCA TTAGCTGCTG GCGGCCAAGG CGTTTCAGTT GCATTTGATT TGGCGACGCA CCGCGGTTAT GACTCAGACC ATCCTCGTGT AGCAGGTGAT GTTGGTAAAG CTGGCGTCGC AATTGACTCA GTTGAAGATA TGAAAATTTT ATTTAACGGC ATTCCGTTAG ATAAGGTTTC TGTCTCAATG ACTATGAATG GTGCTGTGCT ACCTGTGCTA GCCGGCTACA TCGTTGCGGG TGAAGAACAA GGCGTAAAGC AAGAAGCGCT TTCTGGAACC ATACAGAATG ACATTCTGAA AGAGTTCATG GTGCGCAACA CCTATATCTA CCCACCAGAG CCATCAATGC GCATCATTGG TGACATCATT GAATATACGG CAAAAAATAT GCCGAAATTT AACTCGATCT CGATTTCGGG TTATCACATG CAAGAAGCTG GCGCAAACCA GGTATTGGAA TTAGCGTTCA CCTTAGCCGA CGGAAGAGAG TATGTGAAGA CTGCGCTTGC CAAGGGTATG GACGTGGATG GCTTTGCGGG ACGCCTGTCA TTCTTCTTTG CTATTGGTAT GAACTTCTAT TTAGAAGTTG CCAAATTACG TGCCGCTCGT TTGTTGTGGT GGCGCATTAT GAAATCCTTT GAGCCAAAAA ATCCAAAGTC GTTGATGTTG CGCACACACT GTCAAACTTC AGGTTGGTCT TTGACAGAGC AAGACCCCTA CAACAATGTA GTGAGAACGA CTGTTGAGGC AATGGCTGCT GTATTTGGCG GCACTCAGTC TTTGCATACC AATTCATTGG ATGAAGCAAT TGCTTTGCCA TCTGAATTCT CAAGTCGCAT TGCACGTAAT ACCCAATTAA TTTTGCAGGA AGAGACTCAT ATCACTAGCG TGATCGACCC TTGGGCTGGT TCCTACATGA TGGAGAGTTT GACTCAAGAG ATGGCCGATA AAGCCTGGGA AATTATTCAA GAAGTTGATT CCATGGGTGG CATGATTAAG GCAGTCGAAA GTGGTTGGGC CAAGCTCAAG ATCGAGGCCG CCGCAGCTGA AAAACAAGCC AAAATTGACT CGGGTTCAGA TGTCATCGTT GGTGTTAATA AATACAAGCT AGCCAAAGAA GATCTCGTTG ATGTGTTAAT GATTGATAAC GAGATGGTTC GCGAAGGGCA AGTAGCACGT CTTAAAGAAA TCAAAGCTAA GCGTGATACT CAAAAAGTTG AAGCCGCATT AGATGCACTT ACTAAAGCCG CGGAAGATCA CACCGGTAAC TTATTAGAGT TATCAGTCAA TGCTATTCGT TTGCGCGCTA CAGTAGGTGA GGTATCTGAT GCATTAGAAA AGGTTTACGG GCGCCATCGC GCCGATACTC AAAAGGTGAC CGGTGTGTAT GCAGCCGCTT ATGACTCAGC TGAAGGTTGG GCAAAACTTC AAACAGAAAT CGCTGATTTT GCAAAAGATT TTGGTCGTCG CCCCCGTGTG ATGATTGCTA AGCTCGGTCA GGATGGGCAT GACCGCGGCG CTAAGGTTGT GGCTACCGCT TATGCGGACT TAGGGTTTGA CGTTGATATT GGCCCCTTAT TTCAAACTCC TGAAGAGTGC GCTCGTCAGG CCATTGAAAA TGACGTTCAT GCATTAGGCG TCTCAACATT AGCTGCTGGG CATAAAACGC TTGTTCCCGC CATCATTGCA GAGCTGAAAA AACAAGGCTC GGACGACATT ATCGTTTTCG TTGGCGGTGT CATTCCAAGG CAGGATTACG AGTTTCTCTA CGAGGCAGGG GTCAAAGGTA TTTATGGCCC AGGAACACCA ATTCCAGCTT CTGCAAAAGA TGTACTTGAG CAGATTCGTA AATCAATGAA ACCAGTTTAA
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Protein sequence | MQCNKTIREC FVSSDKKSSS TNPWPSFPET NLDAWNKSAQ KSAPNGDVDK LGWNTPDGIQ LKALYTSADT QDLNYTNTLP GFEPFVRGPQ ATMYSVRPWT IRQYAGFSTA EASNAFYREA LAAGGQGVSV AFDLATHRGY DSDHPRVAGD VGKAGVAIDS VEDMKILFNG IPLDKVSVSM TMNGAVLPVL AGYIVAGEEQ GVKQEALSGT IQNDILKEFM VRNTYIYPPE PSMRIIGDII EYTAKNMPKF NSISISGYHM QEAGANQVLE LAFTLADGRE YVKTALAKGM DVDGFAGRLS FFFAIGMNFY LEVAKLRAAR LLWWRIMKSF EPKNPKSLML RTHCQTSGWS LTEQDPYNNV VRTTVEAMAA VFGGTQSLHT NSLDEAIALP SEFSSRIARN TQLILQEETH ITSVIDPWAG SYMMESLTQE MADKAWEIIQ EVDSMGGMIK AVESGWAKLK IEAAAAEKQA KIDSGSDVIV GVNKYKLAKE DLVDVLMIDN EMVREGQVAR LKEIKAKRDT QKVEAALDAL TKAAEDHTGN LLELSVNAIR LRATVGEVSD ALEKVYGRHR ADTQKVTGVY AAAYDSAEGW AKLQTEIADF AKDFGRRPRV MIAKLGQDGH DRGAKVVATA YADLGFDVDI GPLFQTPEEC ARQAIENDVH ALGVSTLAAG HKTLVPAIIA ELKKQGSDDI IVFVGGVIPR QDYEFLYEAG VKGIYGPGTP IPASAKDVLE QIRKSMKPV
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