| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3872 |
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| Symbol | |
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| ID | 5541377 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 5062250 |
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| End bp | 5064472 |
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| Gene Length | 2223 bp |
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| Protein Length | 740 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640895982 |
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| Product | methylmalonyl-CoA mutase |
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| Protein accession | YP_001433926 |
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| Protein GI | 156743797 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit
[COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.231489 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.125312 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAAACCC CGGATTTTAC GACGCTTCCC TATCGTGATG GCGCCGCCGC TCCGACGCTG
GCGCAGTGGC GCGAGCGCGC CGAACGCGAG GCGGGCAAAC CGCTCGATGC ACTGGTCTGG
CGCACGATGG AGCAGATTGA TGTGCGCCCT CTGTATACCG CCGACGATAT TGCCGGGCTG
GAACACCTGC GCTTCACTGC CGGCATCCCA CCATATTTGC GTGGTCCCTA CCCTACCATG
TATGTGACTC AACCCTGGAC GATCCGCCAG TACGCCGGCT TTTCGACCGC TGAGGCGAGC
AATGCGTTCT ACCGGCGCAA TCTGGCAGCC GGGCAGAAGG GTCTGTCGGT CGCCTTCGAC
CTGGCCACGC ACCGCGGCTA CGACTCCGAT CACCCGCGGG TGGTCGGCGA TGTAGGCAAG
GCGGGTGTCG CAATCGACTC GGTGCTCGAC ATGAAGATTC TGTTCGATGG CATCCCGCTC
GATCAGATGT CGGTGTCGAT GACGATGAAC GGTGCCGTCA TTCCGGTGAT GGCGTTCTAC
ATCGTCGCCG CCGAAGAGCA GGGGGTGCGC CAGGAGCAAC TGACCGGCAC GATTCAGAAC
GACATCCTCA AGGAATACAT GGTGCGCAAT ACCTACATCT ATCCGCCTGA ACCGTCAATG
CGCATCATTG CCGATATTTT CGCCTACACG GCAAAGCACA TGCCGAAGTT CAACAGCATC
AGCATTTCCG GCTACCATAT GCAAGAGGCG GGCGCAACCG CCGACCTGGA ATTGGGGTAC
ACGCTGGCAG ACGGGCTGGA GTATGTGCGC GCCGGGTTGA AAGCCGGGTT ATCTATCGAT
GCCTTCGCAC CGCGCATTTC GTTCTTCTGG GCGATCGGCA TGAATTACTT CATGGAGATT
GCCAAGATGC GCGCCGCGCG CCTGCTGTGG GCGAAGATTA TCAAGCAGTT CGACCCCAAA
GATGTTCGCT CGATGGCGCT GCGCACACAC TGTCAGACGT CGGGCTGGAG CCTGACCGAG
CAGGACCCGT TCAACAATGT GGCGCGCACC TGTATCGAGG CAATGGCTGC CGCACTGGGG
CATACGCAGT CGCTCCATAC GAATTCGCTC GACGAAGCGA TTGCGCTGCC GACCGATTTC
TCGGCGCGGA TTGCGCGCAA TACGCAACTC TATCTCCAGG AAGAGACCGG CATCTGCAAG
ATCGTCGATC CGTGGGGCGG CGCGTACTAC CTCGAGTGGC TGACCGATGC GCTGGCGCGG
CGCGCCTGGG CGCACATCCA GGAAGTCGAG GAACTAGGTG GCATGGCGAA AGCCATCGAA
GCCGGGGTGC CGAAACTGCG TATCGAGGAA GCGGCGGCGC GGCGTCAGGC GCATATCGAC
TCCGGGCGCG AGACGATCGT CGGGGTCAAT AAGTATCGCC TGCCCTACGA AGCGCCGATT
GAAATCCTGG AAGTGGACAA CACGGCGGTG CGCCAGGCGC AGATCGAGCG GTTGAAGAAA
CTGCGCGCCG AACGCGATGA GGCGCGCACG CAGGCGGCGC TCGATGCGCT GACCCGCGTG
GCAGCCACCG GCGAAGGCAA CCTGTTGGAA GCGGCGGTTG AAGCAGCGCG AGCGCGCGCG
ACGCTGGGAG AGATTTCAAT GGCAATGGAA AAGGTCTTTG GGCGCTATAA AGCGACTATC
CGCGCAGTGT CGGGGGTGTA CGGCAGCGAG TTCAGCGATG TCGAGCAGAT CCATCATGTG
CGCGCGCTGG CGGATGCATT CGCTGCGCGC GAAGGGCGCC GTCCGCGTAT TCTGGTGGCT
AAAATCGGGC AGGACGGGCA CGACCGCGGC GCCAAGGTGG TGGCGACGGC GTTCGCCGAC
CTCGGCTTCG ATGTGGATAT CGGTTCACTG TTCCAGACGC CGGACGAGGT GGCGCGGCAG
GCGGTCGAAA ACGATGTCCA TGTGGTTGGC ATCAGTTCGC TGGCAGCCGG GCACAAGACG
CTGCTGCCGC AACTGGTCGA AGAACTGCGC AAACTGGGAC GCGACGACAT TCTGGTGGTG
ATCGGCGGTG TTATTCCGGC GCAGGATTAC GAGTTCCTGC GTGAGCACGG TGCAGCCATG
ATCTTCGGTC CCGGTACGAT CATTCCCGTG GCGGCGGAGA AATTGCTCCT GGAGTTGCAG
CGACGATTGC ACGGTGATGG CGTCGAGACC GGTCCGACAG TTCAAACACG GGACGCAGCA
TGA
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| Protein sequence | MKTPDFTTLP YRDGAAAPTL AQWRERAERE AGKPLDALVW RTMEQIDVRP LYTADDIAGL
EHLRFTAGIP PYLRGPYPTM YVTQPWTIRQ YAGFSTAEAS NAFYRRNLAA GQKGLSVAFD
LATHRGYDSD HPRVVGDVGK AGVAIDSVLD MKILFDGIPL DQMSVSMTMN GAVIPVMAFY
IVAAEEQGVR QEQLTGTIQN DILKEYMVRN TYIYPPEPSM RIIADIFAYT AKHMPKFNSI
SISGYHMQEA GATADLELGY TLADGLEYVR AGLKAGLSID AFAPRISFFW AIGMNYFMEI
AKMRAARLLW AKIIKQFDPK DVRSMALRTH CQTSGWSLTE QDPFNNVART CIEAMAAALG
HTQSLHTNSL DEAIALPTDF SARIARNTQL YLQEETGICK IVDPWGGAYY LEWLTDALAR
RAWAHIQEVE ELGGMAKAIE AGVPKLRIEE AAARRQAHID SGRETIVGVN KYRLPYEAPI
EILEVDNTAV RQAQIERLKK LRAERDEART QAALDALTRV AATGEGNLLE AAVEAARARA
TLGEISMAME KVFGRYKATI RAVSGVYGSE FSDVEQIHHV RALADAFAAR EGRRPRILVA
KIGQDGHDRG AKVVATAFAD LGFDVDIGSL FQTPDEVARQ AVENDVHVVG ISSLAAGHKT
LLPQLVEELR KLGRDDILVV IGGVIPAQDY EFLREHGAAM IFGPGTIIPV AAEKLLLELQ
RRLHGDGVET GPTVQTRDAA
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