267 homologs were found in PanDaTox collection
for query gene Noca_2128 on replicon NC_008699
Organism: Nocardioides sp. JS614



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008699  Noca_2128  cobalamin B12-binding domain-containing protein  100 
 
 
172 aa  344  3e-94  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009717  Xaut_5018  cobalamin B12-binding domain-containing protein  66.12 
 
 
135 aa  159  2e-38  Xanthobacter autotrophicus Py2  Bacteria  normal  0.622944  normal 
 
 
-
 
NC_009050  Rsph17029_3654  cobalamin B12-binding domain-containing protein  62.7 
 
 
135 aa  159  2e-38  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.136466 
 
 
-
 
NC_008826  Mpe_B0538  methylmalonyl-CoA mutase C-terminal domain-containing protein  59.52 
 
 
136 aa  151  4e-36  Methylibium petroleiphilum PM1  Bacteria  normal  decreased coverage  0.000893241 
 
 
-
 
NC_013525  Tter_1673  cobalamin B12-binding domain protein  51.13 
 
 
153 aa  138  3.9999999999999997e-32  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009621  Smed_5088  cobalamin B12-binding domain-containing protein  54.33 
 
 
153 aa  134  5e-31  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013743  Htur_0900  cobalamin B12-binding domain protein  49.24 
 
 
138 aa  133  9.999999999999999e-31  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_013744  Htur_4360  cobalamin B12-binding domain protein  52.38 
 
 
138 aa  132  1.9999999999999998e-30  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.36975  n/a   
 
 
-
 
NC_009718  Fnod_1322  cobalamin B12-binding domain-containing protein  46.97 
 
 
136 aa  130  6.999999999999999e-30  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1854  cobalamin B12-binding domain-containing protein  50.38 
 
 
137 aa  130  7.999999999999999e-30  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_4240  cobalamin B12-binding domain protein  46.97 
 
 
139 aa  130  9e-30  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_012029  Hlac_0510  cobalamin B12-binding domain protein  49.22 
 
 
139 aa  129  2.0000000000000002e-29  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  0.736031  normal  0.90311 
 
 
-
 
NC_011830  Dhaf_2692  cobalamin B12-binding domain protein  47.06 
 
 
140 aa  129  2.0000000000000002e-29  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_1715  cobalamin B12-binding domain protein  52.38 
 
 
139 aa  128  3e-29  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0550  cobalamin B12-binding domain-containing protein  49.23 
 
 
133 aa  128  4.0000000000000003e-29  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_013922  Nmag_2472  cobalamin B12-binding domain protein  48.09 
 
 
152 aa  127  5.0000000000000004e-29  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
CP001800  Ssol_0081  cobalamin B12-binding domain protein  48.87 
 
 
141 aa  127  8.000000000000001e-29  Sulfolobus solfataricus 98/2  Archaea  normal  n/a   
 
 
-
 
NC_013202  Hmuk_2805  cobalamin B12-binding domain protein  49.21 
 
 
142 aa  127  8.000000000000001e-29  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.069341  normal 
 
 
-
 
NC_013946  Mrub_1574  cobalamin B12-binding domain-containing protein  52.34 
 
 
137 aa  127  9.000000000000001e-29  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.0630027 
 
 
-
 
NC_009953  Sare_4204  cobalamin B12-binding domain-containing protein  49.24 
 
 
134 aa  127  9.000000000000001e-29  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00605014 
 
 
-
 
NC_009380  Strop_3814  cobalamin B12-binding domain-containing protein  49.24 
 
 
134 aa  127  1.0000000000000001e-28  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_2998  cobalamin B12-binding domain-containing protein  50.39 
 
 
134 aa  125  3e-28  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.651513  normal  0.0337584 
 
 
-
 
NC_008148  Rxyl_2369  methylmalonyl-CoA mutase-like protein  49.6 
 
 
133 aa  125  3e-28  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.308524  n/a   
 
 
-
 
NC_013132  Cpin_0241  cobalamin B12-binding domain protein  47.73 
 
 
139 aa  125  3e-28  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_0582  cobalamin B12-binding domain-containing protein  48.39 
 
 
133 aa  125  4.0000000000000003e-28  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_0377  methylmalonyl-CoA mutase-like  54.1 
 
 
158 aa  124  9e-28  Acidothermus cellulolyticus 11B  Bacteria  normal  0.99713  normal 
 
 
-
 
NC_013595  Sros_1242  methylmalonyl-CoA mutase  51.18 
 
 
135 aa  123  1e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.00778509 
 
 
-
 
NC_011831  Cagg_0587  cobalamin B12-binding domain protein  51.22 
 
 
135 aa  123  1e-27  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.901029 
 
 
-
 
NC_009523  RoseRS_2024  cobalamin B12-binding domain-containing protein  48.84 
 
 
134 aa  122  2e-27  Roseiflexus sp. RS-1  Bacteria  normal  decreased coverage  0.000794891 
 
 
-
 
NC_013744  Htur_3836  cobalamin B12-binding domain protein  49.22 
 
 
138 aa  122  2e-27  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.692162  n/a   
 
 
-
 
NC_013131  Caci_7994  cobalamin B12-binding domain protein  46.83 
 
 
135 aa  122  2e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_3987  cobalamin B12-binding domain-containing protein  45.99 
 
 
137 aa  121  6e-27  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0195294  n/a   
 
 
-
 
NC_013947  Snas_6220  cobalamin B12-binding domain-containing protein  55.28 
 
 
134 aa  120  9.999999999999999e-27  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013522  Taci_0289  cobalamin B12-binding domain protein  44.7 
 
 
140 aa  119  1.9999999999999998e-26  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1769  cobalamin B12-binding domain-containing protein  48.78 
 
 
134 aa  119  1.9999999999999998e-26  Desulfotomaculum reducens MI-1  Bacteria  decreased coverage  0.00734137  n/a   
 
 
-
 
NC_008699  Noca_3591  cobalamin B12-binding domain-containing protein  56.52 
 
 
143 aa  118  3e-26  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013926  Aboo_1359  cobalamin B12-binding domain protein  48.76 
 
 
128 aa  118  3.9999999999999996e-26  Aciduliprofundum boonei T469  Archaea  hitchhiker  0.000000000160657  n/a   
 
 
-
 
NC_007760  Adeh_1832  methylmalonyl-CoA mutase  47.15 
 
 
140 aa  117  6e-26  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.436511  n/a   
 
 
-
 
NC_011145  AnaeK_2028  cobalamin B12-binding domain protein  47.15 
 
 
140 aa  117  6e-26  Anaeromyxobacter sp. K  Bacteria  normal  0.655901  n/a   
 
 
-
 
NC_011891  A2cp1_2098  cobalamin B12-binding domain protein  47.15 
 
 
140 aa  117  9e-26  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1574  methylmalonyl-CoA mutase-like  47.58 
 
 
134 aa  116  9.999999999999999e-26  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000332572  normal  0.305791 
 
 
-
 
NC_009675  Anae109_1989  cobalamin B12-binding domain-containing protein  50.91 
 
 
139 aa  115  1.9999999999999998e-25  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_0059  cobalamin B12-binding domain protein  53.7 
 
 
136 aa  115  1.9999999999999998e-25  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  hitchhiker  0.000107152 
 
 
-
 
NC_013216  Dtox_1910  cobalamin B12-binding domain protein  50.46 
 
 
134 aa  115  3e-25  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.374857  normal  0.0962097 
 
 
-
 
NC_008009  Acid345_1432  methylmalonyl-CoA mutase  50 
 
 
140 aa  115  3.9999999999999997e-25  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.329321 
 
 
-
 
NC_009440  Msed_2055  cobalamin B12-binding domain-containing protein  46.92 
 
 
155 aa  114  6e-25  Metallosphaera sedula DSM 5348  Archaea  normal  normal 
 
 
-
 
NC_013124  Afer_0318  cobalamin B12-binding domain protein  54.55 
 
 
162 aa  114  6.9999999999999995e-25  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_1487  cobalamin B12-binding domain protein  45.97 
 
 
135 aa  113  1.0000000000000001e-24  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.40083  normal  0.12756 
 
 
-
 
NC_002939  GSU1578  B12-binding protein  47.58 
 
 
134 aa  112  2.0000000000000002e-24  Geobacter sulfurreducens PCA  Bacteria  normal  0.432317  n/a   
 
 
-
 
NC_009483  Gura_3482  cobalamin B12-binding domain-containing protein  44.35 
 
 
134 aa  111  5e-24  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2691  cobalamin B12-binding domain protein  45.97 
 
 
134 aa  111  5e-24  Geobacter bemidjiensis Bem  Bacteria  normal  0.0118523  n/a   
 
 
-
 
NC_008609  Ppro_0388  cobalamin B12-binding domain-containing protein  46.72 
 
 
134 aa  111  5e-24  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000031654  n/a   
 
 
-
 
NC_008025  Dgeo_1541  methylmalonyl-CoA mutase, alpha subunit  46.09 
 
 
151 aa  110  6e-24  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0770461  normal 
 
 
-
 
NC_013440  Hoch_3774  cobalamin B12-binding domain protein  45.19 
 
 
157 aa  110  7.000000000000001e-24  Haliangium ochraceum DSM 14365  Bacteria  normal  0.137195  normal  0.13274 
 
 
-
 
NC_009483  Gura_2026  cobalamin B12-binding domain-containing protein  45.16 
 
 
134 aa  110  9e-24  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000113125  n/a   
 
 
-
 
NC_008554  Sfum_0457  cobalamin B12-binding domain-containing protein  46.03 
 
 
133 aa  110  1.0000000000000001e-23  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.364165 
 
 
-
 
NC_012918  GM21_1548  cobalamin B12-binding domain protein  45.16 
 
 
134 aa  109  2.0000000000000002e-23  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000166361 
 
 
-
 
NC_013739  Cwoe_4641  cobalamin B12-binding domain protein  54.65 
 
 
143 aa  108  3e-23  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.123677 
 
 
-
 
NC_013235  Namu_1263  cobalamin B12-binding domain protein  50.4 
 
 
149 aa  107  8.000000000000001e-23  Nakamurella multipartita DSM 44233  Bacteria  normal  0.728671  normal  0.8637 
 
 
-
 
NC_010085  Nmar_0958  cobalamin B12-binding domain-containing protein  43.28 
 
 
140 aa  105  3e-22  Nitrosopumilus maritimus SCM1  Archaea  n/a    hitchhiker  0.0044288 
 
 
-
 
NC_008146  Mmcs_3825  methylmalonyl-CoA mutase C-terminal domain-containing protein  51.79 
 
 
132 aa  103  1e-21  Mycobacterium sp. MCS  Bacteria  normal  0.438631  n/a   
 
 
-
 
NC_008705  Mkms_3899  cobalamin B12-binding domain-containing protein  51.79 
 
 
132 aa  103  1e-21  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3811  cobalamin B12-binding domain-containing protein  51.79 
 
 
132 aa  103  1e-21  Mycobacterium sp. JLS  Bacteria  normal  0.0469463  normal  0.0948206 
 
 
-
 
NC_009338  Mflv_2388  cobalamin B12-binding domain-containing protein  45.86 
 
 
133 aa  102  4e-21  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.698998  normal 
 
 
-
 
NC_008726  Mvan_4260  cobalamin B12-binding domain-containing protein  45.9 
 
 
133 aa  99.8  2e-20  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.480541 
 
 
-
 
NC_009921  Franean1_4309  cobalamin B12-binding domain-containing protein  46.72 
 
 
133 aa  98.6  4e-20  Frankia sp. EAN1pec  Bacteria  normal  normal  0.734858 
 
 
-
 
NC_008699  Noca_1772  methylmalonyl-CoA mutase  44.74 
 
 
680 aa  91.7  4e-18  Nocardioides sp. JS614  Bacteria  normal  0.292142  n/a   
 
 
-
 
NC_009719  Plav_1625  methylmalonyl-CoA mutase, large subunit  41.82 
 
 
667 aa  87.8  7e-17  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_009717  Xaut_5044  cobalamin B12-binding domain-containing protein  42.22 
 
 
148 aa  87.4  9e-17  Xanthobacter autotrophicus Py2  Bacteria  normal  0.256068  normal 
 
 
-
 
NC_007643  Rru_A3062  methylmalonyl-CoA mutase  40.71 
 
 
671 aa  87  1e-16  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_2169  methylmalonyl-CoA mutase  40.87 
 
 
692 aa  87  1e-16  Frankia sp. CcI3  Bacteria  normal  0.485789  normal  0.751366 
 
 
-
 
NC_013739  Cwoe_4193  methylmalonyl-CoA mutase, large subunit  40.85 
 
 
670 aa  86.7  2e-16  Conexibacter woesei DSM 14684  Bacteria  normal  0.669168  normal  0.90036 
 
 
-
 
NC_011059  Paes_0875  methylmalonyl-CoA mutase, large subunit  41.23 
 
 
1081 aa  85.5  3e-16  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.036821 
 
 
-
 
NC_008639  Cpha266_1164  methylmalonyl-CoA mutase  41.07 
 
 
713 aa  85.5  3e-16  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.197015  n/a   
 
 
-
 
NC_008687  Pden_3875  methylmalonyl-CoA mutase, large subunit  40 
 
 
688 aa  85.9  3e-16  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_1173  methylmalonyl-CoA mutase, large subunit  40.35 
 
 
1106 aa  85.1  4e-16  Chlorobium phaeobacteroides BS1  Bacteria  normal  decreased coverage  0.00593374 
 
 
-
 
NC_009253  Dred_1771  cobalamin B12-binding domain-containing protein  33.33 
 
 
148 aa  85.1  5e-16  Desulfotomaculum reducens MI-1  Bacteria  normal  0.379199  n/a   
 
 
-
 
NC_002950  PG1657  methylmalonyl-CoA mutase  42.86 
 
 
715 aa  84.7  6e-16  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.387473 
 
 
-
 
NC_010581  Bind_2199  methylmalonyl-CoA mutase, large subunit  42.99 
 
 
727 aa  84.7  6e-16  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_3621  methylmalonyl-CoA mutase, large subunit  42.11 
 
 
668 aa  84.3  7e-16  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_1167  methylmalonyl-CoA mutase  40.35 
 
 
712 aa  84  9e-16  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.169366  n/a   
 
 
-
 
NC_010803  Clim_0868  methylmalonyl-CoA mutase  38.4 
 
 
715 aa  84  0.000000000000001  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_3544  methylmalonyl-CoA mutase  44.44 
 
 
720 aa  83.6  0.000000000000001  Nocardioides sp. JS614  Bacteria  normal  0.143219  n/a   
 
 
-
 
NC_009921  Franean1_1034  methylmalonyl-CoA mutase, large subunit  42.48 
 
 
666 aa  84  0.000000000000001  Frankia sp. EAN1pec  Bacteria  normal  0.488774  normal  0.762762 
 
 
-
 
NC_009952  Dshi_2855  methylmalonyl-CoA mutase  37.27 
 
 
657 aa  83.2  0.000000000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007514  Cag_1223  methylmalonyl-CoA mutase  42.11 
 
 
712 aa  82.8  0.000000000000002  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0388  methylmalonyl-CoA mutase  38.52 
 
 
714 aa  82.8  0.000000000000002  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_1197  methylmalonyl-CoA mutase, large subunit  41.59 
 
 
657 aa  82  0.000000000000003  Xanthobacter autotrophicus Py2  Bacteria  normal  0.282186  normal 
 
 
-
 
NC_012793  GWCH70_2294  methylmalonyl-CoA mutase  42.86 
 
 
731 aa  82.4  0.000000000000003  Geobacillus sp. WCH70  Bacteria  normal  0.895743  n/a   
 
 
-
 
NC_009441  Fjoh_0014  methylmalonyl-CoA mutase  38.76 
 
 
711 aa  82  0.000000000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  0.185174  n/a   
 
 
-
 
NC_009953  Sare_4003  methylmalonyl-CoA mutase, large subunit  40.35 
 
 
685 aa  81.6  0.000000000000004  Salinispora arenicola CNS-205  Bacteria  normal  0.446619  hitchhiker  0.000372138 
 
 
-
 
NC_007512  Plut_1292  methylmalonyl-CoA mutase  39.2 
 
 
714 aa  82  0.000000000000004  Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.816153 
 
 
-
 
NC_011353  ECH74115_4213  methylmalonyl-CoA mutase  41.96 
 
 
714 aa  82  0.000000000000004  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_5166  methylmalonyl-CoA mutase  40.94 
 
 
724 aa  82  0.000000000000004  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_4373  methylmalonyl-CoA mutase, large subunit  44.44 
 
 
735 aa  81.3  0.000000000000007  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR1190  methylmalonyl-CoA mutase  39.29 
 
 
712 aa  80.1  0.00000000000001  Brucella suis 1330  Bacteria  normal  0.942727  n/a   
 
 
-
 
NC_010814  Glov_3260  methylmalonyl-CoA mutase, large subunit  35.25 
 
 
713 aa  80.5  0.00000000000001  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_0279  methylmalonyl-CoA mutase  40.65 
 
 
731 aa  80.1  0.00000000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009943  Dole_0079  methylmalonyl-CoA mutase  40.15 
 
 
706 aa  80.1  0.00000000000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.373309  n/a   
 
 
-
 
NC_010468  EcolC_0793  methylmalonyl-CoA mutase  41.07 
 
 
714 aa  79.3  0.00000000000002  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
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