More than 300 homologs were found in PanDaTox collection
for query gene Cpin_0241 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_0241  cobalamin B12-binding domain protein  100 
 
 
139 aa  280  5.000000000000001e-75  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_4240  cobalamin B12-binding domain protein  75.54 
 
 
139 aa  219  9.999999999999999e-57  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_1673  cobalamin B12-binding domain protein  67.44 
 
 
153 aa  179  8.000000000000001e-45  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008025  Dgeo_1541  methylmalonyl-CoA mutase, alpha subunit  64.06 
 
 
151 aa  174  3e-43  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0770461  normal 
 
 
-
 
NC_013946  Mrub_1574  cobalamin B12-binding domain-containing protein  67.2 
 
 
137 aa  173  9e-43  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.0630027 
 
 
-
 
NC_014212  Mesil_1715  cobalamin B12-binding domain protein  67.2 
 
 
139 aa  173  9e-43  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2369  methylmalonyl-CoA mutase-like protein  64.34 
 
 
133 aa  172  1.9999999999999998e-42  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.308524  n/a   
 
 
-
 
NC_010320  Teth514_1854  cobalamin B12-binding domain-containing protein  62.2 
 
 
137 aa  171  3.9999999999999995e-42  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1832  methylmalonyl-CoA mutase  64.52 
 
 
140 aa  170  7.999999999999999e-42  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.436511  n/a   
 
 
-
 
NC_011145  AnaeK_2028  cobalamin B12-binding domain protein  63.71 
 
 
140 aa  169  2e-41  Anaeromyxobacter sp. K  Bacteria  normal  0.655901  n/a   
 
 
-
 
NC_011891  A2cp1_2098  cobalamin B12-binding domain protein  63.71 
 
 
140 aa  168  3e-41  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1578  B12-binding protein  60.47 
 
 
134 aa  166  7e-41  Geobacter sulfurreducens PCA  Bacteria  normal  0.432317  n/a   
 
 
-
 
NC_008009  Acid345_1432  methylmalonyl-CoA mutase  64.84 
 
 
140 aa  166  7e-41  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.329321 
 
 
-
 
NC_013522  Taci_0289  cobalamin B12-binding domain protein  59.7 
 
 
140 aa  166  1e-40  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1989  cobalamin B12-binding domain-containing protein  62.5 
 
 
139 aa  164  2.9999999999999998e-40  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_0059  cobalamin B12-binding domain protein  62.9 
 
 
136 aa  164  4e-40  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  hitchhiker  0.000107152 
 
 
-
 
NC_011831  Cagg_0587  cobalamin B12-binding domain protein  61.94 
 
 
135 aa  164  5e-40  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.901029 
 
 
-
 
NC_009767  Rcas_2998  cobalamin B12-binding domain-containing protein  60.61 
 
 
134 aa  163  5.9999999999999996e-40  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.651513  normal  0.0337584 
 
 
-
 
NC_011146  Gbem_2691  cobalamin B12-binding domain protein  60.31 
 
 
134 aa  163  5.9999999999999996e-40  Geobacter bemidjiensis Bem  Bacteria  normal  0.0118523  n/a   
 
 
-
 
NC_009523  RoseRS_2024  cobalamin B12-binding domain-containing protein  59.85 
 
 
134 aa  162  1.0000000000000001e-39  Roseiflexus sp. RS-1  Bacteria  normal  decreased coverage  0.000794891 
 
 
-
 
NC_007517  Gmet_1574  methylmalonyl-CoA mutase-like  59.69 
 
 
134 aa  162  1.0000000000000001e-39  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000332572  normal  0.305791 
 
 
-
 
NC_009483  Gura_2026  cobalamin B12-binding domain-containing protein  60.16 
 
 
134 aa  162  2.0000000000000002e-39  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000113125  n/a   
 
 
-
 
NC_008578  Acel_0377  methylmalonyl-CoA mutase-like  59.09 
 
 
158 aa  162  2.0000000000000002e-39  Acidothermus cellulolyticus 11B  Bacteria  normal  0.99713  normal 
 
 
-
 
NC_012918  GM21_1548  cobalamin B12-binding domain protein  59.54 
 
 
134 aa  161  3e-39  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000166361 
 
 
-
 
NC_008609  Ppro_0388  cobalamin B12-binding domain-containing protein  61.29 
 
 
134 aa  160  4.0000000000000004e-39  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000031654  n/a   
 
 
-
 
NC_009972  Haur_3987  cobalamin B12-binding domain-containing protein  61.54 
 
 
137 aa  160  6e-39  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0195294  n/a   
 
 
-
 
NC_009380  Strop_3814  cobalamin B12-binding domain-containing protein  61.6 
 
 
134 aa  159  9e-39  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_4204  cobalamin B12-binding domain-containing protein  61.6 
 
 
134 aa  159  1e-38  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00605014 
 
 
-
 
NC_009483  Gura_3482  cobalamin B12-binding domain-containing protein  58.59 
 
 
134 aa  158  2e-38  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_2692  cobalamin B12-binding domain protein  60.15 
 
 
140 aa  157  3e-38  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3774  cobalamin B12-binding domain protein  56.15 
 
 
157 aa  157  5e-38  Haliangium ochraceum DSM 14365  Bacteria  normal  0.137195  normal  0.13274 
 
 
-
 
NC_010718  Nther_1487  cobalamin B12-binding domain protein  59.52 
 
 
135 aa  157  7e-38  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.40083  normal  0.12756 
 
 
-
 
CP001800  Ssol_0081  cobalamin B12-binding domain protein  54.2 
 
 
141 aa  156  9e-38  Sulfolobus solfataricus 98/2  Archaea  normal  n/a   
 
 
-
 
NC_009440  Msed_2055  cobalamin B12-binding domain-containing protein  54.01 
 
 
155 aa  155  1e-37  Metallosphaera sedula DSM 5348  Archaea  normal  normal 
 
 
-
 
NC_008554  Sfum_0457  cobalamin B12-binding domain-containing protein  56.59 
 
 
133 aa  155  1e-37  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.364165 
 
 
-
 
NC_009253  Dred_1769  cobalamin B12-binding domain-containing protein  56.45 
 
 
134 aa  152  1e-36  Desulfotomaculum reducens MI-1  Bacteria  decreased coverage  0.00734137  n/a   
 
 
-
 
NC_013131  Caci_7994  cobalamin B12-binding domain protein  59.52 
 
 
135 aa  152  2e-36  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1242  methylmalonyl-CoA mutase  57.02 
 
 
135 aa  151  2.9999999999999998e-36  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.00778509 
 
 
-
 
NC_010003  Pmob_0550  cobalamin B12-binding domain-containing protein  60.98 
 
 
133 aa  150  5.9999999999999996e-36  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1910  cobalamin B12-binding domain protein  53.6 
 
 
134 aa  150  7e-36  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.374857  normal  0.0962097 
 
 
-
 
NC_013947  Snas_6220  cobalamin B12-binding domain-containing protein  58.02 
 
 
134 aa  148  3e-35  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_0582  cobalamin B12-binding domain-containing protein  57.03 
 
 
133 aa  147  4e-35  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013124  Afer_0318  cobalamin B12-binding domain protein  58.54 
 
 
162 aa  146  8e-35  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_013744  Htur_4360  cobalamin B12-binding domain protein  55.12 
 
 
138 aa  145  2.0000000000000003e-34  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.36975  n/a   
 
 
-
 
NC_009717  Xaut_5018  cobalamin B12-binding domain-containing protein  53.85 
 
 
135 aa  142  1e-33  Xanthobacter autotrophicus Py2  Bacteria  normal  0.622944  normal 
 
 
-
 
NC_008699  Noca_3591  cobalamin B12-binding domain-containing protein  58.59 
 
 
143 aa  142  1e-33  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_4641  cobalamin B12-binding domain protein  59.69 
 
 
143 aa  142  2e-33  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.123677 
 
 
-
 
NC_009621  Smed_5088  cobalamin B12-binding domain-containing protein  55.91 
 
 
153 aa  140  5e-33  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013743  Htur_0900  cobalamin B12-binding domain protein  55.12 
 
 
138 aa  140  5e-33  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_013926  Aboo_1359  cobalamin B12-binding domain protein  54.84 
 
 
128 aa  140  8e-33  Aciduliprofundum boonei T469  Archaea  hitchhiker  0.000000000160657  n/a   
 
 
-
 
NC_008826  Mpe_B0538  methylmalonyl-CoA mutase C-terminal domain-containing protein  52.71 
 
 
136 aa  140  8e-33  Methylibium petroleiphilum PM1  Bacteria  normal  decreased coverage  0.000893241 
 
 
-
 
NC_012029  Hlac_0510  cobalamin B12-binding domain protein  55.56 
 
 
139 aa  139  9.999999999999999e-33  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  0.736031  normal  0.90311 
 
 
-
 
NC_013202  Hmuk_2805  cobalamin B12-binding domain protein  54.84 
 
 
142 aa  139  9.999999999999999e-33  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.069341  normal 
 
 
-
 
NC_013922  Nmag_2472  cobalamin B12-binding domain protein  54.76 
 
 
152 aa  139  1.9999999999999998e-32  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_3654  cobalamin B12-binding domain-containing protein  51.54 
 
 
135 aa  137  3.9999999999999997e-32  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.136466 
 
 
-
 
NC_010085  Nmar_0958  cobalamin B12-binding domain-containing protein  53.44 
 
 
140 aa  136  7.999999999999999e-32  Nitrosopumilus maritimus SCM1  Archaea  n/a    hitchhiker  0.0044288 
 
 
-
 
NC_009718  Fnod_1322  cobalamin B12-binding domain-containing protein  56.69 
 
 
136 aa  136  1e-31  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_1263  cobalamin B12-binding domain protein  59.2 
 
 
149 aa  135  2e-31  Nakamurella multipartita DSM 44233  Bacteria  normal  0.728671  normal  0.8637 
 
 
-
 
NC_013744  Htur_3836  cobalamin B12-binding domain protein  51.94 
 
 
138 aa  134  6.0000000000000005e-31  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.692162  n/a   
 
 
-
 
NC_008699  Noca_2128  cobalamin B12-binding domain-containing protein  47.73 
 
 
172 aa  125  2.0000000000000002e-28  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_4309  cobalamin B12-binding domain-containing protein  49.22 
 
 
133 aa  123  8.000000000000001e-28  Frankia sp. EAN1pec  Bacteria  normal  normal  0.734858 
 
 
-
 
NC_008726  Mvan_4260  cobalamin B12-binding domain-containing protein  53.85 
 
 
133 aa  123  9e-28  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.480541 
 
 
-
 
NC_008146  Mmcs_3825  methylmalonyl-CoA mutase C-terminal domain-containing protein  53.39 
 
 
132 aa  123  1e-27  Mycobacterium sp. MCS  Bacteria  normal  0.438631  n/a   
 
 
-
 
NC_009338  Mflv_2388  cobalamin B12-binding domain-containing protein  53.45 
 
 
133 aa  122  1e-27  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.698998  normal 
 
 
-
 
NC_008699  Noca_1772  methylmalonyl-CoA mutase  54.55 
 
 
680 aa  122  1e-27  Nocardioides sp. JS614  Bacteria  normal  0.292142  n/a   
 
 
-
 
NC_008705  Mkms_3899  cobalamin B12-binding domain-containing protein  53.39 
 
 
132 aa  123  1e-27  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3811  cobalamin B12-binding domain-containing protein  53.39 
 
 
132 aa  123  1e-27  Mycobacterium sp. JLS  Bacteria  normal  0.0469463  normal  0.0948206 
 
 
-
 
NC_010831  Cphamn1_1173  methylmalonyl-CoA mutase, large subunit  50.81 
 
 
1106 aa  117  7e-26  Chlorobium phaeobacteroides BS1  Bacteria  normal  decreased coverage  0.00593374 
 
 
-
 
NC_007512  Plut_1292  methylmalonyl-CoA mutase  50.81 
 
 
714 aa  116  9.999999999999999e-26  Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.816153 
 
 
-
 
NC_011060  Ppha_1167  methylmalonyl-CoA mutase  51.3 
 
 
712 aa  113  7.999999999999999e-25  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.169366  n/a   
 
 
-
 
NC_011371  Rleg2_6511  methylmalonyl-CoA mutase  43.18 
 
 
712 aa  112  2.0000000000000002e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_0868  methylmalonyl-CoA mutase  48.39 
 
 
715 aa  112  2.0000000000000002e-24  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_4006  methylmalonyl-CoA mutase  42.42 
 
 
716 aa  111  3e-24  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008639  Cpha266_1164  methylmalonyl-CoA mutase  51.3 
 
 
713 aa  111  3e-24  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.197015  n/a   
 
 
-
 
NC_009921  Franean1_1034  methylmalonyl-CoA mutase, large subunit  48.67 
 
 
666 aa  111  3e-24  Frankia sp. EAN1pec  Bacteria  normal  0.488774  normal  0.762762 
 
 
-
 
NC_011059  Paes_0875  methylmalonyl-CoA mutase, large subunit  49.57 
 
 
1081 aa  110  6e-24  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.036821 
 
 
-
 
NC_009428  Rsph17025_2300  methylmalonyl-CoA mutase  43.94 
 
 
709 aa  109  1.0000000000000001e-23  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007514  Cag_1223  methylmalonyl-CoA mutase  48.7 
 
 
712 aa  109  1.0000000000000001e-23  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_2169  methylmalonyl-CoA mutase  46.49 
 
 
692 aa  109  1.0000000000000001e-23  Frankia sp. CcI3  Bacteria  normal  0.485789  normal  0.751366 
 
 
-
 
NC_008576  Mmc1_0388  methylmalonyl-CoA mutase  46.77 
 
 
714 aa  109  1.0000000000000001e-23  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_012852  Rleg_6098  methylmalonyl-CoA mutase  42.42 
 
 
712 aa  109  1.0000000000000001e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.23929  normal  0.554736 
 
 
-
 
NC_007493  RSP_2192  methylmalonyl-CoA mutase  43.18 
 
 
709 aa  108  3e-23  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.172259  n/a   
 
 
-
 
NC_009049  Rsph17029_0867  methylmalonyl-CoA mutase  43.18 
 
 
709 aa  108  3e-23  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.134958  normal 
 
 
-
 
NC_013739  Cwoe_4193  methylmalonyl-CoA mutase, large subunit  47.37 
 
 
670 aa  107  4.0000000000000004e-23  Conexibacter woesei DSM 14684  Bacteria  normal  0.669168  normal  0.90036 
 
 
-
 
NC_011353  ECH74115_4213  methylmalonyl-CoA mutase  39.85 
 
 
714 aa  107  5e-23  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_3621  methylmalonyl-CoA mutase, large subunit  47.27 
 
 
668 aa  107  6e-23  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_2855  methylmalonyl-CoA mutase  45.61 
 
 
657 aa  106  9.000000000000001e-23  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_2697  methylmalonyl-CoA mutase  46.96 
 
 
720 aa  106  9.000000000000001e-23  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.20812 
 
 
-
 
NC_009379  Pnuc_0910  methylmalonyl-CoA mutase  46.96 
 
 
739 aa  105  1e-22  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.736612  n/a   
 
 
-
 
NC_009953  Sare_4003  methylmalonyl-CoA mutase, large subunit  47.27 
 
 
685 aa  106  1e-22  Salinispora arenicola CNS-205  Bacteria  normal  0.446619  hitchhiker  0.000372138 
 
 
-
 
NC_007794  Saro_0811  methylmalonyl-CoA mutase  45.53 
 
 
714 aa  106  1e-22  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.251875  n/a   
 
 
-
 
NC_010531  Pnec_0932  methylmalonyl-CoA mutase  46.96 
 
 
724 aa  105  1e-22  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2805  methylmalonyl-CoA mutase  46.09 
 
 
719 aa  105  1e-22  Rhodoferax ferrireducens T118  Bacteria  normal  0.147831  n/a   
 
 
-
 
NC_007948  Bpro_2161  methylmalonyl-CoA mutase  46.09 
 
 
723 aa  105  1e-22  Polaromonas sp. JS666  Bacteria  normal  0.385791  normal  0.481947 
 
 
-
 
CP001637  EcDH1_0776  methylmalonyl-CoA mutase, large subunit  39.1 
 
 
714 aa  105  2e-22  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_3244  methylmalonyl-CoA mutase  39.1 
 
 
714 aa  105  2e-22  Escherichia coli E24377A  Bacteria  normal  0.98625  n/a   
 
 
-
 
NC_007517  Gmet_2208  methylmalonyl-CoA mutase-like  42.97 
 
 
135 aa  105  2e-22  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00000192903  normal  0.0126749 
 
 
-
 
NC_010498  EcSMS35_3053  methylmalonyl-CoA mutase  39.1 
 
 
714 aa  105  2e-22  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_2127  methylmalonyl-CoA mutase  46.09 
 
 
720 aa  105  2e-22  Variovorax paradoxus S110  Bacteria  normal  0.063815  n/a   
 
 
-
 
NC_013411  GYMC61_0279  methylmalonyl-CoA mutase  44.44 
 
 
731 aa  105  2e-22  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
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