Gene Nmar_0958 details

Gene Information

• Locus tag: Nmar_0958
• ID: 5774013
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosopumilus maritimus SCM1
• Kingdom: Archaea
• Replicon accession: NC_010085
• Strand: +
• Start bp: 837459
• End bp: 837881
• Gene Length: 423 bp
• Protein Length: 140 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 641316597
• Product: cobalamin B12-binding domain-containing protein
• Protein accession: YP_001582292
• Protein GI: 161528466
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding)
• TIGRFAM ID: [TIGR00640] methylmalonyl-CoA mutase C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 19
• Fosmid unclonability p-value: 0.0044288
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGAAACAAA AAACACAAAC AAGAAACATC AAGATTCTAG TTGCTAAATT AGGCCTTGAT 
GGACATGATA GAGGAGCACT TGTTTTGTGT AGAGCATTTA GGGATGCAGG AATGGAAGTA 
ATCTATTCAG GACTTTTTGC AACACCAGAA AGAGTTGCAC AGATTGCAGA AGACGAAGAT 
GTTGATGCAA TTGCAATGAG TTTACTTAAT GGAGCACATG GAACTTTATT CCCAAGAGTA 
GTCAAAGCTC TCAAAAAGAA AAAGATCAAT GACGTTCTAG TTGTTGGGGG AGGAGTAATT 
CCAGAAATTG ATCATAAAGA TTTGATCAAG GCAGGAGTTG ACCACGTGTT TGGTCCAGGA 
ACACCATTAC CTACAATTAT TGATCATATC AATACAGGCG TAGGTAAATT AAGAAAAATA 
TAA 

 

Protein sequence

MKQKTQTRNI KILVAKLGLD GHDRGALVLC RAFRDAGMEV IYSGLFATPE RVAQIAEDED 
VDAIAMSLLN GAHGTLFPRV VKALKKKKIN DVLVVGGGVI PEIDHKDLIK AGVDHVFGPG 
TPLPTIIDHI NTGVGKLRKI