More than 300 homologs were found in PanDaTox collection
for query gene Rxyl_2369 on replicon NC_008148
Organism: Rubrobacter xylanophilus DSM 9941



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008148  Rxyl_2369  methylmalonyl-CoA mutase-like protein  100 
 
 
133 aa  264  2e-70  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.308524  n/a   
 
 
-
 
NC_009380  Strop_3814  cobalamin B12-binding domain-containing protein  68.94 
 
 
134 aa  189  1e-47  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1989  cobalamin B12-binding domain-containing protein  69.53 
 
 
139 aa  188  2e-47  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_4204  cobalamin B12-binding domain-containing protein  68.18 
 
 
134 aa  187  4e-47  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00605014 
 
 
-
 
NC_011145  AnaeK_2028  cobalamin B12-binding domain protein  67.97 
 
 
140 aa  187  5e-47  Anaeromyxobacter sp. K  Bacteria  normal  0.655901  n/a   
 
 
-
 
NC_013522  Taci_0289  cobalamin B12-binding domain protein  69.77 
 
 
140 aa  186  5.999999999999999e-47  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1578  B12-binding protein  66.41 
 
 
134 aa  186  1e-46  Geobacter sulfurreducens PCA  Bacteria  normal  0.432317  n/a   
 
 
-
 
NC_011891  A2cp1_2098  cobalamin B12-binding domain protein  67.97 
 
 
140 aa  186  1e-46  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1832  methylmalonyl-CoA mutase  67.19 
 
 
140 aa  185  2e-46  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.436511  n/a   
 
 
-
 
NC_007517  Gmet_1574  methylmalonyl-CoA mutase-like  67.97 
 
 
134 aa  184  3e-46  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000332572  normal  0.305791 
 
 
-
 
NC_013739  Cwoe_4641  cobalamin B12-binding domain protein  75.78 
 
 
143 aa  184  3e-46  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.123677 
 
 
-
 
NC_008609  Ppro_0388  cobalamin B12-binding domain-containing protein  67.44 
 
 
134 aa  184  4e-46  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000031654  n/a   
 
 
-
 
NC_014212  Mesil_1715  cobalamin B12-binding domain protein  67.18 
 
 
139 aa  183  5e-46  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_1854  cobalamin B12-binding domain-containing protein  65.65 
 
 
137 aa  183  8e-46  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1673  cobalamin B12-binding domain protein  66.41 
 
 
153 aa  182  1.0000000000000001e-45  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008578  Acel_0377  methylmalonyl-CoA mutase-like  68.22 
 
 
158 aa  182  1.0000000000000001e-45  Acidothermus cellulolyticus 11B  Bacteria  normal  0.99713  normal 
 
 
-
 
NC_013595  Sros_1242  methylmalonyl-CoA mutase  69.29 
 
 
135 aa  182  2.0000000000000003e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.00778509 
 
 
-
 
NC_013946  Mrub_1574  cobalamin B12-binding domain-containing protein  66.15 
 
 
137 aa  181  2.0000000000000003e-45  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.0630027 
 
 
-
 
NC_009483  Gura_2026  cobalamin B12-binding domain-containing protein  67.19 
 
 
134 aa  178  2e-44  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000113125  n/a   
 
 
-
 
NC_013061  Phep_4240  cobalamin B12-binding domain protein  63.57 
 
 
139 aa  178  2.9999999999999997e-44  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_3482  cobalamin B12-binding domain-containing protein  65.89 
 
 
134 aa  177  4e-44  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_1541  methylmalonyl-CoA mutase, alpha subunit  64.84 
 
 
151 aa  177  4e-44  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0770461  normal 
 
 
-
 
NC_013131  Caci_7994  cobalamin B12-binding domain protein  67.21 
 
 
135 aa  176  1e-43  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_2691  cobalamin B12-binding domain protein  64.84 
 
 
134 aa  175  2e-43  Geobacter bemidjiensis Bem  Bacteria  normal  0.0118523  n/a   
 
 
-
 
NC_011831  Cagg_0587  cobalamin B12-binding domain protein  64.66 
 
 
135 aa  175  2e-43  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.901029 
 
 
-
 
NC_014210  Ndas_0059  cobalamin B12-binding domain protein  66.94 
 
 
136 aa  173  7e-43  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  hitchhiker  0.000107152 
 
 
-
 
NC_009440  Msed_2055  cobalamin B12-binding domain-containing protein  64.57 
 
 
155 aa  172  9e-43  Metallosphaera sedula DSM 5348  Archaea  normal  normal 
 
 
-
 
NC_012918  GM21_1548  cobalamin B12-binding domain protein  64.06 
 
 
134 aa  172  9.999999999999999e-43  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000166361 
 
 
-
 
NC_013132  Cpin_0241  cobalamin B12-binding domain protein  64.34 
 
 
139 aa  172  1.9999999999999998e-42  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
CP001800  Ssol_0081  cobalamin B12-binding domain protein  60.8 
 
 
141 aa  171  3.9999999999999995e-42  Sulfolobus solfataricus 98/2  Archaea  normal  n/a   
 
 
-
 
NC_011830  Dhaf_2692  cobalamin B12-binding domain protein  66.67 
 
 
140 aa  170  5.999999999999999e-42  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_6220  cobalamin B12-binding domain-containing protein  67.44 
 
 
134 aa  168  2e-41  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_3774  cobalamin B12-binding domain protein  59.84 
 
 
157 aa  167  3e-41  Haliangium ochraceum DSM 14365  Bacteria  normal  0.137195  normal  0.13274 
 
 
-
 
NC_010718  Nther_1487  cobalamin B12-binding domain protein  63.71 
 
 
135 aa  167  4e-41  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.40083  normal  0.12756 
 
 
-
 
NC_009767  Rcas_2998  cobalamin B12-binding domain-containing protein  62.5 
 
 
134 aa  165  1e-40  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.651513  normal  0.0337584 
 
 
-
 
NC_012029  Hlac_0510  cobalamin B12-binding domain protein  58.14 
 
 
139 aa  163  5.9999999999999996e-40  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  0.736031  normal  0.90311 
 
 
-
 
NC_013744  Htur_4360  cobalamin B12-binding domain protein  60.47 
 
 
138 aa  163  6.9999999999999995e-40  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.36975  n/a   
 
 
-
 
NC_009616  Tmel_0582  cobalamin B12-binding domain-containing protein  60.63 
 
 
133 aa  163  8e-40  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013922  Nmag_2472  cobalamin B12-binding domain protein  59.69 
 
 
152 aa  163  9e-40  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_013926  Aboo_1359  cobalamin B12-binding domain protein  62.9 
 
 
128 aa  162  1.0000000000000001e-39  Aciduliprofundum boonei T469  Archaea  hitchhiker  0.000000000160657  n/a   
 
 
-
 
NC_010003  Pmob_0550  cobalamin B12-binding domain-containing protein  65.87 
 
 
133 aa  162  1.0000000000000001e-39  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2024  cobalamin B12-binding domain-containing protein  60.94 
 
 
134 aa  162  2.0000000000000002e-39  Roseiflexus sp. RS-1  Bacteria  normal  decreased coverage  0.000794891 
 
 
-
 
NC_013202  Hmuk_2805  cobalamin B12-binding domain protein  59.69 
 
 
142 aa  161  3e-39  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.069341  normal 
 
 
-
 
NC_013124  Afer_0318  cobalamin B12-binding domain protein  62.6 
 
 
162 aa  159  1e-38  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_1432  methylmalonyl-CoA mutase  57.35 
 
 
140 aa  159  1e-38  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.329321 
 
 
-
 
NC_008699  Noca_3591  cobalamin B12-binding domain-containing protein  70.73 
 
 
143 aa  159  1e-38  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3987  cobalamin B12-binding domain-containing protein  60.77 
 
 
137 aa  158  2e-38  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0195294  n/a   
 
 
-
 
NC_013743  Htur_0900  cobalamin B12-binding domain protein  59.69 
 
 
138 aa  157  3e-38  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_008826  Mpe_B0538  methylmalonyl-CoA mutase C-terminal domain-containing protein  56.59 
 
 
136 aa  153  6e-37  Methylibium petroleiphilum PM1  Bacteria  normal  decreased coverage  0.000893241 
 
 
-
 
NC_009717  Xaut_5018  cobalamin B12-binding domain-containing protein  54.89 
 
 
135 aa  153  7e-37  Xanthobacter autotrophicus Py2  Bacteria  normal  0.622944  normal 
 
 
-
 
NC_013744  Htur_3836  cobalamin B12-binding domain protein  57.36 
 
 
138 aa  152  2e-36  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.692162  n/a   
 
 
-
 
NC_009050  Rsph17029_3654  cobalamin B12-binding domain-containing protein  54.14 
 
 
135 aa  151  2.9999999999999998e-36  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.136466 
 
 
-
 
NC_008554  Sfum_0457  cobalamin B12-binding domain-containing protein  52.67 
 
 
133 aa  150  5.9999999999999996e-36  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.364165 
 
 
-
 
NC_009253  Dred_1769  cobalamin B12-binding domain-containing protein  53.54 
 
 
134 aa  150  5.9999999999999996e-36  Desulfotomaculum reducens MI-1  Bacteria  decreased coverage  0.00734137  n/a   
 
 
-
 
NC_013216  Dtox_1910  cobalamin B12-binding domain protein  52.34 
 
 
134 aa  149  8.999999999999999e-36  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.374857  normal  0.0962097 
 
 
-
 
NC_013235  Namu_1263  cobalamin B12-binding domain protein  65.83 
 
 
149 aa  149  2e-35  Nakamurella multipartita DSM 44233  Bacteria  normal  0.728671  normal  0.8637 
 
 
-
 
NC_009718  Fnod_1322  cobalamin B12-binding domain-containing protein  56.69 
 
 
136 aa  147  4e-35  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_5088  cobalamin B12-binding domain-containing protein  62.62 
 
 
153 aa  140  8e-33  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_4309  cobalamin B12-binding domain-containing protein  57.85 
 
 
133 aa  137  6e-32  Frankia sp. EAN1pec  Bacteria  normal  normal  0.734858 
 
 
-
 
NC_010085  Nmar_0958  cobalamin B12-binding domain-containing protein  51.97 
 
 
140 aa  135  2e-31  Nitrosopumilus maritimus SCM1  Archaea  n/a    hitchhiker  0.0044288 
 
 
-
 
NC_008146  Mmcs_3825  methylmalonyl-CoA mutase C-terminal domain-containing protein  56.56 
 
 
132 aa  135  2e-31  Mycobacterium sp. MCS  Bacteria  normal  0.438631  n/a   
 
 
-
 
NC_008705  Mkms_3899  cobalamin B12-binding domain-containing protein  56.56 
 
 
132 aa  135  2e-31  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3811  cobalamin B12-binding domain-containing protein  56.56 
 
 
132 aa  135  2e-31  Mycobacterium sp. JLS  Bacteria  normal  0.0469463  normal  0.0948206 
 
 
-
 
NC_009338  Mflv_2388  cobalamin B12-binding domain-containing protein  54.47 
 
 
133 aa  129  1.0000000000000001e-29  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.698998  normal 
 
 
-
 
NC_008726  Mvan_4260  cobalamin B12-binding domain-containing protein  54.1 
 
 
133 aa  128  3e-29  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.480541 
 
 
-
 
NC_008699  Noca_2128  cobalamin B12-binding domain-containing protein  49.6 
 
 
172 aa  125  2.0000000000000002e-28  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3753  methylmalonyl-CoA mutase  50 
 
 
738 aa  124  4.0000000000000003e-28  Delftia acidovorans SPH-1  Bacteria  normal  0.801598  normal  0.879758 
 
 
-
 
NC_012791  Vapar_2127  methylmalonyl-CoA mutase  47.37 
 
 
720 aa  124  6e-28  Variovorax paradoxus S110  Bacteria  normal  0.063815  n/a   
 
 
-
 
NC_008825  Mpe_A1014  methylmalonyl-CoA mutase  47.37 
 
 
719 aa  122  1e-27  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.856859 
 
 
-
 
NC_007948  Bpro_2161  methylmalonyl-CoA mutase  46.62 
 
 
723 aa  121  2e-27  Polaromonas sp. JS666  Bacteria  normal  0.385791  normal  0.481947 
 
 
-
 
NC_010524  Lcho_2697  methylmalonyl-CoA mutase  47.01 
 
 
720 aa  122  2e-27  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.20812 
 
 
-
 
NC_008752  Aave_2510  methylmalonyl-CoA mutase  46.62 
 
 
722 aa  122  2e-27  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.178476 
 
 
-
 
NC_010831  Cphamn1_1173  methylmalonyl-CoA mutase, large subunit  52.1 
 
 
1106 aa  121  3e-27  Chlorobium phaeobacteroides BS1  Bacteria  normal  decreased coverage  0.00593374 
 
 
-
 
NC_013757  Gobs_4373  methylmalonyl-CoA mutase, large subunit  48.76 
 
 
735 aa  121  3e-27  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_0932  methylmalonyl-CoA mutase  46.27 
 
 
724 aa  120  4e-27  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2805  methylmalonyl-CoA mutase  46.15 
 
 
719 aa  120  7e-27  Rhodoferax ferrireducens T118  Bacteria  normal  0.147831  n/a   
 
 
-
 
NC_011371  Rleg2_6511  methylmalonyl-CoA mutase  47.2 
 
 
712 aa  119  9.999999999999999e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_1849  methylmalonyl-CoA mutase  46.92 
 
 
720 aa  119  9.999999999999999e-27  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_0910  methylmalonyl-CoA mutase  45.8 
 
 
739 aa  119  9.999999999999999e-27  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.736612  n/a   
 
 
-
 
NC_008782  Ajs_2040  methylmalonyl-CoA mutase  46.21 
 
 
720 aa  119  9.999999999999999e-27  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1772  methylmalonyl-CoA mutase  53.64 
 
 
680 aa  119  1.9999999999999998e-26  Nocardioides sp. JS614  Bacteria  normal  0.292142  n/a   
 
 
-
 
NC_008781  Pnap_2383  methylmalonyl-CoA mutase  45.8 
 
 
718 aa  118  1.9999999999999998e-26  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_012852  Rleg_6098  methylmalonyl-CoA mutase  48.33 
 
 
712 aa  118  3e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.23929  normal  0.554736 
 
 
-
 
NC_004310  BR1190  methylmalonyl-CoA mutase  51.35 
 
 
712 aa  117  3.9999999999999996e-26  Brucella suis 1330  Bacteria  normal  0.942727  n/a   
 
 
-
 
NC_007512  Plut_1292  methylmalonyl-CoA mutase  52.63 
 
 
714 aa  116  7.999999999999999e-26  Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.816153 
 
 
-
 
NC_007298  Daro_4006  methylmalonyl-CoA mutase  43.85 
 
 
716 aa  116  9.999999999999999e-26  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_0388  methylmalonyl-CoA mutase  47.29 
 
 
714 aa  116  9.999999999999999e-26  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_3398  methylmalonyl-CoA mutase  49.57 
 
 
731 aa  116  9.999999999999999e-26  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.526303  normal 
 
 
-
 
NC_009428  Rsph17025_2300  methylmalonyl-CoA mutase  45.38 
 
 
709 aa  115  1.9999999999999998e-25  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_2192  methylmalonyl-CoA mutase  45.53 
 
 
709 aa  115  1.9999999999999998e-25  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.172259  n/a   
 
 
-
 
NC_009049  Rsph17029_0867  methylmalonyl-CoA mutase  45.53 
 
 
709 aa  115  1.9999999999999998e-25  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.134958  normal 
 
 
-
 
NC_008639  Cpha266_1164  methylmalonyl-CoA mutase  50.42 
 
 
713 aa  114  3.9999999999999997e-25  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.197015  n/a   
 
 
-
 
NC_011060  Ppha_1167  methylmalonyl-CoA mutase  50.88 
 
 
712 aa  114  5e-25  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.169366  n/a   
 
 
-
 
NC_011353  ECH74115_4213  methylmalonyl-CoA mutase  46.09 
 
 
714 aa  113  6.9999999999999995e-25  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010655  Amuc_1983  methylmalonyl-CoA mutase  45.67 
 
 
714 aa  113  8.999999999999998e-25  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  0.774356  normal  0.0211504 
 
 
-
 
NC_009667  Oant_2001  methylmalonyl-CoA mutase  46.9 
 
 
714 aa  113  1.0000000000000001e-24  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1702  methylmalonyl-CoA mutase  47.37 
 
 
718 aa  113  1.0000000000000001e-24  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.0321557 
 
 
-
 
NC_008025  Dgeo_1320  methylmalonyl-CoA mutase  49.57 
 
 
722 aa  113  1.0000000000000001e-24  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_007514  Cag_1223  methylmalonyl-CoA mutase  50 
 
 
712 aa  112  2.0000000000000002e-24  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_0868  methylmalonyl-CoA mutase  50.88 
 
 
715 aa  112  2.0000000000000002e-24  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
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