More than 300 homologs were found in PanDaTox collection
for query gene Dshi_3485 on replicon NC_009952
Organism: Dinoroseobacter shibae DFL 12



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009952  Dshi_3485  response regulator  100 
 
 
422 aa  853    Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2647  response regulator receiver protein  49.39 
 
 
418 aa  374  1e-102  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0228439  normal  0.825958 
 
 
-
 
NC_009049  Rsph17029_2870  response regulator receiver protein  46.77 
 
 
418 aa  370  1e-101  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_2887  response regulator receiver modulated serine phosphatase  48.29 
 
 
423 aa  363  4e-99  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1210  response regulator receiver protein  46.23 
 
 
400 aa  358  9.999999999999999e-98  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.0544929  n/a   
 
 
-
 
NC_007802  Jann_0071  response regulator receiver (CheY-like) modulated serine phosphatase  43.88 
 
 
426 aa  355  5.999999999999999e-97  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_0495  response regulator receiver protein  44.98 
 
 
423 aa  330  3e-89  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA1440  response regulator  38.64 
 
 
391 aa  244  1.9999999999999999e-63  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0677305  n/a   
 
 
-
 
NC_013457  VEA_000007  serine phosphatase RsbU regulator of sigma subunit  35.86 
 
 
397 aa  216  5e-55  Vibrio sp. Ex25  Bacteria  normal  0.441967  n/a   
 
 
-
 
NC_011313  VSAL_II0329  putative response regulator  31.66 
 
 
415 aa  201  9.999999999999999e-51  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0302  response regulator receiver modulated serine phosphatase  29.53 
 
 
400 aa  191  1e-47  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2943  response regulator receiver modulated serine phosphatase  28.99 
 
 
470 aa  191  2e-47  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_05599  response regulator receiver  34.01 
 
 
560 aa  188  1e-46  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_2013  response regulator receiver modulated serine phosphatase  31.34 
 
 
411 aa  187  4e-46  Shewanella sp. ANA-3  Bacteria  normal  0.155477  normal  0.0155604 
 
 
-
 
NC_011884  Cyan7425_2673  response regulator receiver modulated serine phosphatase  30.02 
 
 
392 aa  184  2.0000000000000003e-45  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_1702  response regulator receiver modulated serine phosphatase  29.65 
 
 
460 aa  176  7e-43  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_1432  response regulator receiver modulated serine phosphatase  28.04 
 
 
407 aa  169  7e-41  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_3648  response regulator receiver modulated serine phosphatase  29.28 
 
 
380 aa  168  1e-40  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_1566  response regulator receiver (CheY) modulated Serine phosphatase  29.56 
 
 
396 aa  159  9e-38  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.244929 
 
 
-
 
NC_011884  Cyan7425_2078  response regulator receiver modulated serine phosphatase  29.56 
 
 
379 aa  155  1e-36  Cyanothece sp. PCC 7425  Bacteria  normal  0.61197  normal 
 
 
-
 
NC_008312  Tery_0921  response regulator receiver modulated serine phosphatase  26.91 
 
 
378 aa  143  5e-33  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_0176  response regulator receiver modulated serine phosphatase  27.27 
 
 
378 aa  139  1e-31  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0825  response regulator receiver modulated serine phosphatase  27.09 
 
 
526 aa  136  6.0000000000000005e-31  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.126425  normal  0.339318 
 
 
-
 
NC_009485  BBta_2152  putative response regulator, putative serine phosphatase  29.61 
 
 
434 aa  135  9.999999999999999e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_1870  response regulator receiver modulated serine phosphatase  27.72 
 
 
379 aa  135  1.9999999999999998e-30  Cyanothece sp. PCC 8802  Bacteria  normal  0.177859  normal 
 
 
-
 
NC_011726  PCC8801_1844  response regulator receiver modulated serine phosphatase  27.48 
 
 
379 aa  133  6e-30  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008009  Acid345_2946  response regulator receiver modulated serine phosphatase  28.4 
 
 
384 aa  132  9e-30  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_3688  response regulator receiver protein  28.57 
 
 
564 aa  132  1.0000000000000001e-29  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3534  response regulator receiver protein  24.75 
 
 
393 aa  131  2.0000000000000002e-29  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_3723  response regulator receiver (CheY) modulated Serine phosphatase  26.97 
 
 
378 aa  130  4.0000000000000003e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0976167  normal  0.601311 
 
 
-
 
NC_008347  Mmar10_0279  response regulator receiver modulated serine phosphatase  26.86 
 
 
394 aa  129  8.000000000000001e-29  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1671  response regulator/GGDEF domain-containing protein  45.19 
 
 
322 aa  128  2.0000000000000002e-28  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_4363  response regulator receiver protein  28.29 
 
 
563 aa  128  2.0000000000000002e-28  Pseudomonas putida KT2440  Bacteria  normal  normal  0.470941 
 
 
-
 
NC_009512  Pput_1504  response regulator receiver protein  28.29 
 
 
563 aa  128  2.0000000000000002e-28  Pseudomonas putida F1  Bacteria  normal  0.709749  normal  0.106415 
 
 
-
 
NC_008789  Hhal_0205  response regulator receiver protein  27.7 
 
 
395 aa  128  2.0000000000000002e-28  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3924  response regulator receiver protein  28.47 
 
 
563 aa  128  2.0000000000000002e-28  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3580  response regulator receiver protein  28.47 
 
 
564 aa  127  3e-28  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_0905  response regulator receiver modulated serine phosphatase  25.52 
 
 
380 aa  124  2e-27  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_1784  putative two-component response regulator  27.18 
 
 
571 aa  125  2e-27  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2673  response regulator receiver modulated serine phosphatase  28.7 
 
 
389 aa  124  2e-27  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2192  response regulator receiver modulated diguanylate cyclase  29.29 
 
 
303 aa  124  3e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_20780  putative two-component response regulator  27.43 
 
 
571 aa  124  3e-27  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.283191  normal 
 
 
-
 
NC_011725  BCB4264_A1035  response regulator  24.82 
 
 
380 aa  124  4e-27  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0898  sigma factor sigB regulation protein  25.35 
 
 
380 aa  124  4e-27  Bacillus cereus E33L  Bacteria  normal  0.503671  n/a   
 
 
-
 
NC_011773  BCAH820_1070  response regulator  25.35 
 
 
358 aa  124  4e-27  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  9.209800000000002e-41 
 
 
-
 
NC_004578  PSPTO_1964  response regulator  28.19 
 
 
568 aa  123  5e-27  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.58831  n/a   
 
 
-
 
NC_005957  BT9727_0915  sigma factor sigB regulation protein  25.35 
 
 
380 aa  124  5e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00116334  n/a   
 
 
-
 
NC_011772  BCG9842_B4268  response regulator  25 
 
 
380 aa  123  5e-27  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00568873 
 
 
-
 
NC_010424  Daud_1846  response regulator receiver modulated diguanylate cyclase  41.48 
 
 
314 aa  123  5e-27  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A1161  response regulator  25.35 
 
 
380 aa  123  6e-27  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1088  response regulator  24.5 
 
 
380 aa  121  1.9999999999999998e-26  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1706  response regulator receiver modulated diguanylate cyclase  35.96 
 
 
324 aa  121  1.9999999999999998e-26  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS0930  response regulator  25.63 
 
 
380 aa  120  3e-26  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0994  response regulator  25.63 
 
 
380 aa  120  3e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1991  response regulator receiver protein  26.63 
 
 
574 aa  120  3.9999999999999996e-26  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3451  response regulator receiver:ATP-binding region, ATPase-like:stage II sporulation E  27.49 
 
 
568 aa  120  4.9999999999999996e-26  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.223622  normal 
 
 
-
 
NC_010501  PputW619_1682  response regulator receiver modulated serine phosphatase  25.53 
 
 
412 aa  119  9.999999999999999e-26  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2819  response regulator receiver protein  26.42 
 
 
562 aa  118  1.9999999999999998e-25  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0360472 
 
 
-
 
NC_010571  Oter_0999  response regulator receiver modulated serine phosphatase  26.56 
 
 
602 aa  118  1.9999999999999998e-25  Opitutus terrae PB90-1  Bacteria  normal  0.118416  hitchhiker  0.00369461 
 
 
-
 
NC_002977  MCA0833  response regulator  27.27 
 
 
389 aa  116  6e-25  Methylococcus capsulatus str. Bath  Bacteria  normal  0.106584  n/a   
 
 
-
 
NC_007492  Pfl01_3849  response regulator receiver (CheY) modulated Serine phosphatase  26.76 
 
 
412 aa  116  7.999999999999999e-25  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.658628 
 
 
-
 
NC_007492  Pfl01_1542  response regulator receiver domain-containing protein  27.06 
 
 
567 aa  116  1.0000000000000001e-24  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.3365  normal  0.98827 
 
 
-
 
NC_004578  PSPTO_2117  response regulator  25.85 
 
 
394 aa  114  2.0000000000000002e-24  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0129975  n/a   
 
 
-
 
NC_007005  Psyr_1912  response regulator receiver:stage II sporulation E  26.88 
 
 
394 aa  115  2.0000000000000002e-24  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.432168  hitchhiker  0.00180426 
 
 
-
 
NC_012560  Avin_34360  Response regulator  25.8 
 
 
575 aa  114  5e-24  Azotobacter vinelandii DJ  Bacteria  normal  0.328347  n/a   
 
 
-
 
NC_011146  Gbem_0731  response regulator receiver modulated serine phosphatase  26.02 
 
 
396 aa  113  7.000000000000001e-24  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_0679  response regulator receiver  42.74 
 
 
337 aa  112  1.0000000000000001e-23  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.0836964  n/a   
 
 
-
 
NC_009439  Pmen_1929  response regulator receiver protein  28.06 
 
 
394 aa  112  1.0000000000000001e-23  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.310245 
 
 
-
 
NC_008463  PA14_27940  putative two-component response regulator  27.09 
 
 
394 aa  112  1.0000000000000001e-23  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2442  response regulator receiver modulated diguanylate cyclase  35.92 
 
 
316 aa  112  2.0000000000000002e-23  Geobacter lovleyi SZ  Bacteria  normal  0.103678  n/a   
 
 
-
 
NC_009483  Gura_2000  response regulator receiver sensor signal transduction histidine kinase  33.33 
 
 
364 aa  111  2.0000000000000002e-23  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000423497  n/a   
 
 
-
 
NC_009512  Pput_3577  response regulator receiver protein  25.5 
 
 
393 aa  110  3e-23  Pseudomonas putida F1  Bacteria  decreased coverage  0.00266085  normal 
 
 
-
 
NC_010322  PputGB1_1706  response regulator receiver modulated serine phosphatase  25.5 
 
 
393 aa  110  4.0000000000000004e-23  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.000168842 
 
 
-
 
NC_007912  Sde_1112  response regulator receiver domain-containing protein  25.33 
 
 
399 aa  110  5e-23  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2165  response regulator  25.5 
 
 
393 aa  110  6e-23  Pseudomonas putida KT2440  Bacteria  normal  0.0249002  normal  0.813701 
 
 
-
 
NC_014150  Bmur_2502  response regulator receiver modulated serine phosphatase  23.94 
 
 
384 aa  110  7.000000000000001e-23  Brachyspira murdochii DSM 12563  Bacteria  hitchhiker  0.00000000149084  n/a   
 
 
-
 
NC_008346  Swol_0600  response regulator receiver protein  32.18 
 
 
301 aa  110  7.000000000000001e-23  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1524  putative PAS/PAC sensor protein  29.57 
 
 
409 aa  109  1e-22  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1643  GGDEF/response regulator receiver domain-containing protein  40.8 
 
 
316 aa  108  2e-22  Geobacter sulfurreducens PCA  Bacteria  normal  0.176359  n/a   
 
 
-
 
NC_007796  Mhun_3234  serine phosphatase  30.04 
 
 
631 aa  107  3e-22  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007519  Dde_1723  response regulator receiver (CheY-like) modulated serine phosphatase  26.24 
 
 
381 aa  107  4e-22  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00833768  n/a   
 
 
-
 
NC_011886  Achl_3449  response regulator receiver protein  27.51 
 
 
371 aa  107  4e-22  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_011831  Cagg_1830  response regulator receiver modulated diguanylate cyclase  29.75 
 
 
941 aa  107  5e-22  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_0583  response regulator receiver protein  27.33 
 
 
394 aa  107  5e-22  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2467  response regulator receiver modulated serine phosphatase  23.86 
 
 
385 aa  106  7e-22  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_1615  response regulator receiver protein  40.74 
 
 
228 aa  106  7e-22  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.00000138875  n/a   
 
 
-
 
NC_009656  PSPA7_2359  putative two-component response regulator  26.74 
 
 
394 aa  106  8e-22  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2998  response regulator receiver protein  24.71 
 
 
377 aa  106  9e-22  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_2008  response regulator receiver protein  37.67 
 
 
404 aa  105  1e-21  Opitutus terrae PB90-1  Bacteria  normal  normal  0.325522 
 
 
-
 
NC_009483  Gura_1513  stage II sporulation E family protein  27.48 
 
 
397 aa  105  2e-21  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3890  response regulator receiver protein  27.27 
 
 
378 aa  105  2e-21  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_2082  anti-sigma-factor antagonist domain-containing protein  27.99 
 
 
566 aa  103  5e-21  Polaromonas sp. JS666  Bacteria  normal  normal  0.806146 
 
 
-
 
NC_007614  Nmul_A2693  diguanylate cyclase  36.03 
 
 
302 aa  102  1e-20  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_1594  response regulator receiver protein  25.25 
 
 
548 aa  102  1e-20  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_32720  Response regulator  27.03 
 
 
394 aa  100  5e-20  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU2313  response regulator  38.28 
 
 
301 aa  100  6e-20  Geobacter sulfurreducens PCA  Bacteria  normal  0.483613  n/a   
 
 
-
 
NC_010571  Oter_3856  response regulator receiver sensor signal transduction histidine kinase  41.59 
 
 
378 aa  99.8  8e-20  Opitutus terrae PB90-1  Bacteria  normal  normal  0.215089 
 
 
-
 
NC_008789  Hhal_2157  response regulator receiver protein  24.52 
 
 
577 aa  99.8  9e-20  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_3770  response regulator receiver protein  26.8 
 
 
391 aa  99.8  9e-20  Roseiflexus sp. RS-1  Bacteria  normal  unclonable  0.0000112062 
 
 
-
 
NC_009952  Dshi_1538  phosphate regulon transcriptional regulatory protein  38.33 
 
 
228 aa  99.4  1e-19  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.280381 
 
 
-
 
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