More than 300 homologs were found in PanDaTox collection
for query gene Pden_0495 on replicon NC_008686
Organism: Paracoccus denitrificans PD1222



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008686  Pden_0495  response regulator receiver protein  100 
 
 
423 aa  848    Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_2870  response regulator receiver protein  48.76 
 
 
418 aa  366  1e-100  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2647  response regulator receiver protein  49.26 
 
 
418 aa  364  2e-99  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0228439  normal  0.825958 
 
 
-
 
NC_008044  TM1040_2887  response regulator receiver modulated serine phosphatase  46.63 
 
 
423 aa  362  8e-99  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1210  response regulator receiver protein  48.12 
 
 
400 aa  357  2.9999999999999997e-97  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.0544929  n/a   
 
 
-
 
NC_009952  Dshi_3485  response regulator  44.98 
 
 
422 aa  350  4e-95  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_0071  response regulator receiver (CheY-like) modulated serine phosphatase  42.89 
 
 
426 aa  317  2e-85  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA1440  response regulator  39.48 
 
 
391 aa  222  9e-57  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0677305  n/a   
 
 
-
 
NC_011313  VSAL_II0329  putative response regulator  33.61 
 
 
415 aa  210  5e-53  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0302  response regulator receiver modulated serine phosphatase  32.68 
 
 
400 aa  202  9e-51  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000007  serine phosphatase RsbU regulator of sigma subunit  34.28 
 
 
397 aa  196  7e-49  Vibrio sp. Ex25  Bacteria  normal  0.441967  n/a   
 
 
-
 
NC_009831  Ssed_2943  response regulator receiver modulated serine phosphatase  30.83 
 
 
470 aa  187  5e-46  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_05599  response regulator receiver  32.09 
 
 
560 aa  179  8e-44  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010506  Swoo_1702  response regulator receiver modulated serine phosphatase  29.75 
 
 
460 aa  175  1.9999999999999998e-42  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_2013  response regulator receiver modulated serine phosphatase  29.95 
 
 
411 aa  170  3e-41  Shewanella sp. ANA-3  Bacteria  normal  0.155477  normal  0.0155604 
 
 
-
 
NC_009901  Spea_1432  response regulator receiver modulated serine phosphatase  28.5 
 
 
407 aa  169  7e-41  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2673  response regulator receiver modulated serine phosphatase  29.78 
 
 
392 aa  166  8e-40  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_3648  response regulator receiver modulated serine phosphatase  28.86 
 
 
380 aa  166  1.0000000000000001e-39  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010571  Oter_0999  response regulator receiver modulated serine phosphatase  31.4 
 
 
602 aa  162  7e-39  Opitutus terrae PB90-1  Bacteria  normal  0.118416  hitchhiker  0.00369461 
 
 
-
 
NC_008148  Rxyl_2673  response regulator receiver modulated serine phosphatase  32.84 
 
 
389 aa  161  2e-38  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0205  response regulator receiver protein  32.41 
 
 
395 aa  156  8e-37  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2078  response regulator receiver modulated serine phosphatase  29.65 
 
 
379 aa  152  8e-36  Cyanothece sp. PCC 7425  Bacteria  normal  0.61197  normal 
 
 
-
 
NC_011726  PCC8801_1844  response regulator receiver modulated serine phosphatase  29.86 
 
 
379 aa  152  8.999999999999999e-36  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008312  Tery_0921  response regulator receiver modulated serine phosphatase  25.98 
 
 
378 aa  150  3e-35  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_1870  response regulator receiver modulated serine phosphatase  29.59 
 
 
379 aa  151  3e-35  Cyanothece sp. PCC 8802  Bacteria  normal  0.177859  normal 
 
 
-
 
NC_008009  Acid345_2946  response regulator receiver modulated serine phosphatase  26.97 
 
 
384 aa  149  1.0000000000000001e-34  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1566  response regulator receiver (CheY) modulated Serine phosphatase  27.88 
 
 
396 aa  148  2.0000000000000003e-34  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.244929 
 
 
-
 
NC_007413  Ava_3723  response regulator receiver (CheY) modulated Serine phosphatase  28.9 
 
 
378 aa  147  4.0000000000000006e-34  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0976167  normal  0.601311 
 
 
-
 
NC_014248  Aazo_0176  response regulator receiver modulated serine phosphatase  27.62 
 
 
378 aa  145  2e-33  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0825  response regulator receiver modulated serine phosphatase  29.2 
 
 
526 aa  144  4e-33  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.126425  normal  0.339318 
 
 
-
 
NC_007492  Pfl01_3849  response regulator receiver (CheY) modulated Serine phosphatase  29.81 
 
 
412 aa  137  5e-31  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.658628 
 
 
-
 
NC_013173  Dbac_2998  response regulator receiver protein  28.94 
 
 
377 aa  135  1.9999999999999998e-30  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_3577  response regulator receiver protein  29.68 
 
 
393 aa  133  6.999999999999999e-30  Pseudomonas putida F1  Bacteria  decreased coverage  0.00266085  normal 
 
 
-
 
NC_009485  BBta_2152  putative response regulator, putative serine phosphatase  28.89 
 
 
434 aa  132  7.999999999999999e-30  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2165  response regulator  29.68 
 
 
393 aa  132  9e-30  Pseudomonas putida KT2440  Bacteria  normal  0.0249002  normal  0.813701 
 
 
-
 
NC_010322  PputGB1_1706  response regulator receiver modulated serine phosphatase  29.39 
 
 
393 aa  132  1.0000000000000001e-29  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.000168842 
 
 
-
 
NC_007912  Sde_2179  flagellar basal-body rod protein FlgC  28.54 
 
 
575 aa  130  3e-29  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_1682  response regulator receiver modulated serine phosphatase  29.26 
 
 
412 aa  131  3e-29  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_01717  putative response regulator  26.04 
 
 
568 aa  129  7.000000000000001e-29  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_3770  response regulator receiver protein  30.14 
 
 
391 aa  129  7.000000000000001e-29  Roseiflexus sp. RS-1  Bacteria  normal  unclonable  0.0000112062 
 
 
-
 
NC_008463  PA14_27940  putative two-component response regulator  29.11 
 
 
394 aa  129  1.0000000000000001e-28  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2442  response regulator receiver modulated diguanylate cyclase  40.44 
 
 
316 aa  128  2.0000000000000002e-28  Geobacter lovleyi SZ  Bacteria  normal  0.103678  n/a   
 
 
-
 
NC_013526  Tter_2192  response regulator receiver modulated diguanylate cyclase  36.12 
 
 
303 aa  127  4.0000000000000003e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1088  response regulator  26.63 
 
 
380 aa  124  2e-27  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1912  response regulator receiver:stage II sporulation E  27.53 
 
 
394 aa  124  2e-27  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.432168  hitchhiker  0.00180426 
 
 
-
 
NC_007519  Dde_1723  response regulator receiver (CheY-like) modulated serine phosphatase  27.82 
 
 
381 aa  124  2e-27  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00833768  n/a   
 
 
-
 
NC_009656  PSPA7_2359  putative two-component response regulator  28.82 
 
 
394 aa  125  2e-27  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_32720  Response regulator  29.14 
 
 
394 aa  124  3e-27  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4268  response regulator  26.29 
 
 
380 aa  124  3e-27  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00568873 
 
 
-
 
NC_009767  Rcas_1114  response regulator receiver modulated serine phosphatase  25.72 
 
 
391 aa  124  3e-27  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2117  response regulator  27.25 
 
 
394 aa  124  4e-27  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0129975  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0905  response regulator receiver modulated serine phosphatase  26.91 
 
 
380 aa  124  4e-27  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1830  response regulator receiver modulated diguanylate cyclase  27.7 
 
 
941 aa  123  6e-27  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK0898  sigma factor sigB regulation protein  26.35 
 
 
380 aa  123  6e-27  Bacillus cereus E33L  Bacteria  normal  0.503671  n/a   
 
 
-
 
NC_014150  Bmur_2502  response regulator receiver modulated serine phosphatase  23.94 
 
 
384 aa  123  6e-27  Brachyspira murdochii DSM 12563  Bacteria  hitchhiker  0.00000000149084  n/a   
 
 
-
 
NC_005957  BT9727_0915  sigma factor sigB regulation protein  26.35 
 
 
380 aa  123  8e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00116334  n/a   
 
 
-
 
NC_008740  Maqu_1991  response regulator receiver protein  28.65 
 
 
574 aa  122  8e-27  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A1161  response regulator  26.35 
 
 
380 aa  122  9e-27  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1070  response regulator  26.35 
 
 
358 aa  122  9e-27  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  9.209800000000002e-41 
 
 
-
 
NC_009439  Pmen_2819  response regulator receiver protein  27.75 
 
 
562 aa  121  1.9999999999999998e-26  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0360472 
 
 
-
 
NC_013501  Rmar_0589  response regulator receiver modulated serine phosphatase  27.93 
 
 
371 aa  122  1.9999999999999998e-26  Rhodothermus marinus DSM 4252  Bacteria  normal  0.420228  n/a   
 
 
-
 
NC_002939  GSU1671  response regulator/GGDEF domain-containing protein  39.38 
 
 
322 aa  120  6e-26  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0930  response regulator  26.06 
 
 
380 aa  119  7.999999999999999e-26  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0994  response regulator  26.06 
 
 
380 aa  119  7.999999999999999e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3451  response regulator receiver:ATP-binding region, ATPase-like:stage II sporulation E  27.57 
 
 
568 aa  119  9.999999999999999e-26  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.223622  normal 
 
 
-
 
NC_011831  Cagg_2467  response regulator receiver modulated serine phosphatase  25.25 
 
 
385 aa  118  1.9999999999999998e-25  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3580  response regulator receiver protein  26.3 
 
 
564 aa  118  1.9999999999999998e-25  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A1035  response regulator  25.71 
 
 
380 aa  118  1.9999999999999998e-25  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_0279  response regulator receiver modulated serine phosphatase  28.41 
 
 
394 aa  118  1.9999999999999998e-25  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_34360  Response regulator  26.42 
 
 
575 aa  117  3e-25  Azotobacter vinelandii DJ  Bacteria  normal  0.328347  n/a   
 
 
-
 
NC_009523  RoseRS_0032  stage II sporulation E family protein  30.66 
 
 
365 aa  117  3.9999999999999997e-25  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_2082  anti-sigma-factor antagonist domain-containing protein  31.35 
 
 
566 aa  117  3.9999999999999997e-25  Polaromonas sp. JS666  Bacteria  normal  normal  0.806146 
 
 
-
 
NC_009439  Pmen_1929  response regulator receiver protein  27.95 
 
 
394 aa  117  5e-25  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.310245 
 
 
-
 
NC_007912  Sde_1112  response regulator receiver domain-containing protein  26.8 
 
 
399 aa  117  5e-25  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_3924  response regulator receiver protein  26.7 
 
 
563 aa  116  6e-25  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_3449  response regulator receiver protein  28.45 
 
 
371 aa  116  6e-25  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009767  Rcas_4210  protein serine/threonine phosphatase  30.98 
 
 
361 aa  116  6.9999999999999995e-25  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.379426  normal  0.154823 
 
 
-
 
NC_004578  PSPTO_1964  response regulator  26.89 
 
 
568 aa  116  7.999999999999999e-25  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.58831  n/a   
 
 
-
 
NC_008346  Swol_0600  response regulator receiver protein  45.74 
 
 
301 aa  116  8.999999999999998e-25  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0731  response regulator receiver modulated serine phosphatase  27.65 
 
 
396 aa  115  1.0000000000000001e-24  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2062  serine phosphatase  30.95 
 
 
366 aa  114  2.0000000000000002e-24  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.39738 
 
 
-
 
NC_008541  Arth_3890  response regulator receiver protein  27.27 
 
 
378 aa  114  2.0000000000000002e-24  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_1504  response regulator receiver protein  26.57 
 
 
563 aa  114  3e-24  Pseudomonas putida F1  Bacteria  normal  0.709749  normal  0.106415 
 
 
-
 
NC_002947  PP_4363  response regulator receiver protein  26.57 
 
 
563 aa  114  4.0000000000000004e-24  Pseudomonas putida KT2440  Bacteria  normal  normal  0.470941 
 
 
-
 
NC_008789  Hhal_2157  response regulator receiver protein  25.68 
 
 
577 aa  113  5e-24  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_1753  response regulator receiver modulated serine phosphatase  23 
 
 
486 aa  111  3e-23  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.646626  n/a   
 
 
-
 
NC_002977  MCA0833  response regulator  27.38 
 
 
389 aa  110  4.0000000000000004e-23  Methylococcus capsulatus str. Bath  Bacteria  normal  0.106584  n/a   
 
 
-
 
NC_009943  Dole_0140  response regulator receiver protein  27.49 
 
 
371 aa  110  4.0000000000000004e-23  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1524  putative PAS/PAC sensor protein  27.43 
 
 
409 aa  110  5e-23  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1784  putative two-component response regulator  27.63 
 
 
571 aa  110  5e-23  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_3234  serine phosphatase  27.68 
 
 
631 aa  110  6e-23  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_008463  PA14_20780  putative two-component response regulator  26.76 
 
 
571 aa  110  6e-23  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.283191  normal 
 
 
-
 
NC_007492  Pfl01_1542  response regulator receiver domain-containing protein  25.94 
 
 
567 aa  110  7.000000000000001e-23  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.3365  normal  0.98827 
 
 
-
 
NC_008009  Acid345_4657  serine phosphatase  30.71 
 
 
467 aa  109  1e-22  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.767582  normal 
 
 
-
 
NC_010501  PputW619_3688  response regulator receiver protein  26.32 
 
 
564 aa  108  2e-22  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_3753  response regulator receiver modulated serine phosphatase  26.14 
 
 
393 aa  106  8e-22  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_3802  response regulator receiver modulated serine phosphatase  26.14 
 
 
393 aa  106  8e-22  Cyanothece sp. PCC 8802  Bacteria  normal  0.477794  normal 
 
 
-
 
NC_010424  Daud_1846  response regulator receiver modulated diguanylate cyclase  42.42 
 
 
314 aa  106  9e-22  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_0729  protein serine/threonine phosphatase  28.91 
 
 
364 aa  105  1e-21  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.950002  n/a   
 
 
-
 
NC_008576  Mmc1_3534  response regulator receiver protein  24.75 
 
 
393 aa  105  2e-21  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>