| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1912 |
|---|
| Symbol | |
|---|
| ID | 3367422 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 2186217 |
|---|
| End bp | 2187401 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637652258 |
|---|
| Product | response regulator receiver:stage II sporulation E |
|---|
| Protein accession | YP_234994 |
|---|
| Protein GI | 66045153 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.432168 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00180426 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAAAA CCAGTGCCAA GCTGCTGATT ATCGATGACG ACGACGTAGT GCGCGCAAGT
CTTGCCGCCT ACCTTGAAGA CAGTGGCTTC AGCGTTCTGC AAGCGAGTAA TGGCTTGCAG
GGAATTCAGA TATTCGAGCA GGAGAACCCC GATCTGGTGG TCTGCGACTT ACGCATGCCA
CAGATGGGAG GGCTTGAGCT GATCCGTCAG GTGACGGCCA TTGCTCCGCA GACGCCTGTC
ATCGTCGTAT CCGGCGCGGG CGTGATGAGC GATGCAGTCG AAGCTTTGCG TCTCGGCGCT
GCCGACTACC TGATCAAGCC CCTCGAAGAT CTTGCCGTAC TCGAGCATTC GGTGCGTCGT
GCGCTGGATA GGGCTCGCCT GCTCACTGAA AACCAGGTCT ATCGCGAAAA GCTGGAAAAG
GCCAATCGCG AACTCGAAGC CAGTCTTCAT CTGTTGCAGG AAGACCAGGA CGCGGGTCGG
CAAGTGCAGA TGAACATGCT GCCGATCACG CCGTGGTCAA TTGACGCGTT CAAGTTCGCG
CACCAGATCA TTCCATCGTT GTACCTGTCC GGCGACTTTG TCGATTATTT CAGGGTCGAC
GAACGGCGCG TCGCCTTCTA TCTGGCTGAT GTTTCAGGGC ATGGTGCGTC ATCGGCGTTC
ATCACCGTGC TGCTGAAGTT CATGACCACT CGGCTGCTGT TCGAGTCCAA GCGTGGCGGC
ACGCTTCCGG AATTCAAGCC GTCTGATGTG CTGGGGCATA TCAACCGTGG CCTCATCAGT
TGCAAGCTGG GCAAGCACGT TACGATGGTC GGCGGTGTCA TCGACGAAGA GTCAGGTAAA
CTGACGTACG CAGTGGGCGG ACATCTGCCA TTGCCTGTGT TGTATTCCGA AGGGCAGGCG
CATTACCTGG AAGGTCGTGG ACTGCCTGTC GGGTTGTTCA ACGAGGCCAC CTATCAGGAT
CACGAAATCG ATCTGCCCGA GTCCTTCAGT CTGACCATGT TGTCTGATGG CATACTGGAC
TTGTTACCCG GTGATACACT CAAAGAGAAA GAAGCCGTCC TTCCCGAATT GGTCAAGGCG
GCTGGCGGCA GCCTGGATGG CTTGCAGCGG GTTTTTGAAT TGGCAACGCT AGGGGAGATG
CCGGATGATA TCGCCTTGTT AGTGTTAAGC AGGAATCTTG AATGA
|
|---|
| Protein sequence | MPKTSAKLLI IDDDDVVRAS LAAYLEDSGF SVLQASNGLQ GIQIFEQENP DLVVCDLRMP
QMGGLELIRQ VTAIAPQTPV IVVSGAGVMS DAVEALRLGA ADYLIKPLED LAVLEHSVRR
ALDRARLLTE NQVYREKLEK ANRELEASLH LLQEDQDAGR QVQMNMLPIT PWSIDAFKFA
HQIIPSLYLS GDFVDYFRVD ERRVAFYLAD VSGHGASSAF ITVLLKFMTT RLLFESKRGG
TLPEFKPSDV LGHINRGLIS CKLGKHVTMV GGVIDEESGK LTYAVGGHLP LPVLYSEGQA
HYLEGRGLPV GLFNEATYQD HEIDLPESFS LTMLSDGILD LLPGDTLKEK EAVLPELVKA
AGGSLDGLQR VFELATLGEM PDDIALLVLS RNLE
|
|---|
| |