| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3485 |
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| Symbol | |
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| ID | 5713716 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3665965 |
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| End bp | 3667233 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641269414 |
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| Product | response regulator |
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| Protein accession | YP_001534819 |
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| Protein GI | 159046025 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTCCCA ACGTGCAAAG CCCAACCCAC CCGCCGGAGA CCAGCGCAGG GCGCCGGTTG
CAGGTTCTCG TGGTGGATGA CAGCCGATTG CAGCGGCGCA TCCTGTCGAT GGCCCTGAAG
AAGAAAGGCT ACGATGTCTT CGAGGCCGAG GATGGCAATC ACGGTTTCGA GATATTCAGC
CAGAATCATA TCGATATCGT GATAAGCGAC TGGATGATGC CCGGCCTGTC CGGTCCGGAC
CTGTGTCGCA AACTCCGCGC TGTCGAGTCG GAGCACTACG TCTACATCAT CTTGCTCACC
ACCAAGTCGG AGAAGGATGA GATCGCGCAG GGCTTCGATG CCGGGGCCGA CGATTTCCTG
TCCAAACCGG TTCATGCGGT CGAACTCATG GCGCGAATCA CGGCTGGTGA GCGGGTCATG
CGGATGGAAC GGGAACTGAC CACGAAGAAC CACCTGATCT CCGAAACCCT CGCGGAGCTG
AAGACGCTCT ATCATGCGCT CGACAGTGAT CTGATCGAGG CCAAGAAGCT GCAGCAGTCG
CTGGTGCGGG ACAAGACGGG CACGTTCGGA CGGGCCGATC TTGCCCTGAT GCTTAAGTCC
AGCGGTCACG TGGGGGGTGA CCTCGTGGGG TTCTTCCCGA TCAACGATTT TGAGGTGGGC
CTCTATTCCC TCGATGTCTC CGGCCACGGG GTCAGTTCGG CACTGATGAC CGCGCGCCTT
GCCGGGGTGC TTTCGGGGTC CATGCCCGGC AAGAACATCG CGATCGAGGC TGACGGGGCG
GGCCAACCGG TGGGGCGCGA CCCCGGTGCC GTGGCCGCTG ACCTCAACCG TTTGCTCCTC
GAAGAGATGG AGACCGAGCA TTACTTCACG ATCATGCTGG GCATCCTGAA CATCGATACC
GGTGTGTTGC GCATGGTGCA GGCCGGTCAT CCCCACGGGC ACTTGCTGCG CAACGGGGCG
GGGTCCGATC TTCTGGGTGA AGGGGGCCTG CCGATCGGTC TGCTGGATGC CGCCGACTAT
ACCAGCTTCA CCGCGACGCT CGCGCCGGGC GACCGGGTGC TGCTTGTCTC CGACGGGTTC
ACCGAATGCA CCGATCCGGC GGGAAACATG CTCGATGACG AAGGCCTGGC CGCCTGGTTC
GCGCAGCACC GGGATCTCGA CGGCCCGGCC TTGATGGACA TCCTGCCGCG CGACCTGGAG
CGGTTCGCGC AGAGCACTGA TTTCGGAGAT GACATCTCCG CCTTGGTGCT CGATTTCGGC
AGGGGCTGA
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| Protein sequence | MIPNVQSPTH PPETSAGRRL QVLVVDDSRL QRRILSMALK KKGYDVFEAE DGNHGFEIFS
QNHIDIVISD WMMPGLSGPD LCRKLRAVES EHYVYIILLT TKSEKDEIAQ GFDAGADDFL
SKPVHAVELM ARITAGERVM RMERELTTKN HLISETLAEL KTLYHALDSD LIEAKKLQQS
LVRDKTGTFG RADLALMLKS SGHVGGDLVG FFPINDFEVG LYSLDVSGHG VSSALMTARL
AGVLSGSMPG KNIAIEADGA GQPVGRDPGA VAADLNRLLL EEMETEHYFT IMLGILNIDT
GVLRMVQAGH PHGHLLRNGA GSDLLGEGGL PIGLLDAADY TSFTATLAPG DRVLLVSDGF
TECTDPAGNM LDDEGLAAWF AQHRDLDGPA LMDILPRDLE RFAQSTDFGD DISALVLDFG
RG
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