| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_1566 |
|---|
| Symbol | |
|---|
| ID | 3681109 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 1932306 |
|---|
| End bp | 1933496 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637716906 |
|---|
| Product | response regulator receiver (CheY) modulated Serine phosphatase |
|---|
| Protein accession | YP_322084 |
|---|
| Protein GI | 75907788 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.244929 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTAAAAA TTTTAGTCAT TGACGATGAT CCGGTTGTGC GGACGGTGCT AAAAAGAACG
CTTGAGAATC AGGGTTACGA AACTACTGTT GTCAACAATG GAGAGGAAGG AATTATTCAA
GCAAAGCTCC TCCGTCCCGC ATTGATTATT TGTGATTGGG TGATGTCTGG GTTAGATGGA
TTGGAAGTCT GTCGTCAAGT TAAAGCAAAT CCAGAGTTAG CAACTAGTTT TTTTATTTTG
TTAACTGCTA AGGGAGCAGC ACCAGGAGAG GAGAAAGACA GAGTTAAAGG ACTGGATGCT
GGAGCTGATG AGTTTATCTC TAAACCAATC GAAATGATTG AATTAAAAGC GCGGGTAAGA
GCCGGACTCA GGTTACATCA ACTCAACCAG GATTTACAAA TCCAAAAACA AACTTTAGAA
ATGCTCAACC ATGATTTACA AACCCAAAAG CAAACCTTAG AAGCAGACTT AGCCGAAGCT
GCCGATTATG TGCGATCGCT TCTACCCAAA CCCCTGGAAG GAAAAGTAAA TACAGAAACC
TTATTTATTC CTTCAACCCA GTTGGGGGGT GATTGCTTCG ATTATTACTG GCTGGATGAC
GAGCATTTGG CAATTTATCT ATTGGATGTA TCAGGACATG GAATAGGTTC TGCTTTATTA
TCTGTCTCTA TCTTGAATAT TCTGCGATCG CAATCTTTAC CTAATACTAA TTTCTACAAG
CCTAGAGAAG TTTTAAAGGC GCTAAATCAT GCTTTCCAGA TGGCAAATCA CGGCGATAAA
TACTTCACGA TTTGGTATGG AGTTTATCAC TGTATTCAAC ATCAACTTGT CTATGCTAGC
GCCGGACATC CCCCGGCCGT AATCCTATCT GGTAAACCTG AAACTGGTTT TCAAGTTAAA
CGACTCAATT CTTTAGATTT ACCCATAGGA TTTTTACCTG ATGTGCAATT TGAGGATGCT
ATCTGGGAAG TGAAGAAAGA CAGCACTCTT TACATATTTA GTGATGGCAT TTATGAAATT
AGAGAGCCAG ATGGTAAGAT TTTAGGACTC GATGCCTTTA TTGAAATACT AACTAACTCT
AGCCAGAAAG AACCCTGTAA TATTCATTAT ATATTAATGC AAATAATGAC CTTAAATATT
CAACAAATAC TTGAAGATGA TTTATCATTA TTAAAAATTA CTTTGGGTTG A
|
|---|
| Protein sequence | MVKILVIDDD PVVRTVLKRT LENQGYETTV VNNGEEGIIQ AKLLRPALII CDWVMSGLDG
LEVCRQVKAN PELATSFFIL LTAKGAAPGE EKDRVKGLDA GADEFISKPI EMIELKARVR
AGLRLHQLNQ DLQIQKQTLE MLNHDLQTQK QTLEADLAEA ADYVRSLLPK PLEGKVNTET
LFIPSTQLGG DCFDYYWLDD EHLAIYLLDV SGHGIGSALL SVSILNILRS QSLPNTNFYK
PREVLKALNH AFQMANHGDK YFTIWYGVYH CIQHQLVYAS AGHPPAVILS GKPETGFQVK
RLNSLDLPIG FLPDVQFEDA IWEVKKDSTL YIFSDGIYEI REPDGKILGL DAFIEILTNS
SQKEPCNIHY ILMQIMTLNI QQILEDDLSL LKITLG
|
|---|
| |