More than 300 homologs were found in PanDaTox collection
for query gene MCA1440 on replicon NC_002977
Organism: Methylococcus capsulatus str. Bath



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002977  MCA1440  response regulator  100 
 
 
391 aa  789    Methylococcus capsulatus str. Bath  Bacteria  normal  0.0677305  n/a   
 
 
-
 
NC_013457  VEA_000007  serine phosphatase RsbU regulator of sigma subunit  39.43 
 
 
397 aa  246  6.999999999999999e-64  Vibrio sp. Ex25  Bacteria  normal  0.441967  n/a   
 
 
-
 
NC_009952  Dshi_3485  response regulator  38.64 
 
 
422 aa  244  9.999999999999999e-64  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_011313  VSAL_II0329  putative response regulator  33.5 
 
 
415 aa  233  3e-60  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0302  response regulator receiver modulated serine phosphatase  35.16 
 
 
400 aa  221  9.999999999999999e-57  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_2887  response regulator receiver modulated serine phosphatase  36.52 
 
 
423 aa  215  9e-55  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2647  response regulator receiver protein  39.08 
 
 
418 aa  215  9.999999999999999e-55  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0228439  normal  0.825958 
 
 
-
 
NC_008686  Pden_0495  response regulator receiver protein  39.89 
 
 
423 aa  212  1e-53  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_05599  response regulator receiver  36.44 
 
 
560 aa  209  5e-53  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_2943  response regulator receiver modulated serine phosphatase  33.24 
 
 
470 aa  209  7e-53  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_2870  response regulator receiver protein  38.22 
 
 
418 aa  209  1e-52  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_0071  response regulator receiver (CheY-like) modulated serine phosphatase  36 
 
 
426 aa  203  4e-51  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1210  response regulator receiver protein  38.51 
 
 
400 aa  203  5e-51  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.0544929  n/a   
 
 
-
 
NC_008577  Shewana3_2013  response regulator receiver modulated serine phosphatase  32.91 
 
 
411 aa  201  1.9999999999999998e-50  Shewanella sp. ANA-3  Bacteria  normal  0.155477  normal  0.0155604 
 
 
-
 
NC_007413  Ava_1566  response regulator receiver (CheY) modulated Serine phosphatase  35.21 
 
 
396 aa  200  3.9999999999999996e-50  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.244929 
 
 
-
 
NC_009901  Spea_1432  response regulator receiver modulated serine phosphatase  31.92 
 
 
407 aa  196  5.000000000000001e-49  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2673  response regulator receiver modulated serine phosphatase  33.72 
 
 
392 aa  183  5.0000000000000004e-45  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_1870  response regulator receiver modulated serine phosphatase  33.33 
 
 
379 aa  179  4.999999999999999e-44  Cyanothece sp. PCC 8802  Bacteria  normal  0.177859  normal 
 
 
-
 
NC_011726  PCC8801_1844  response regulator receiver modulated serine phosphatase  33.33 
 
 
379 aa  179  5.999999999999999e-44  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010506  Swoo_1702  response regulator receiver modulated serine phosphatase  30.77 
 
 
460 aa  178  2e-43  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_0176  response regulator receiver modulated serine phosphatase  33.24 
 
 
378 aa  177  3e-43  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_3648  response regulator receiver modulated serine phosphatase  32.46 
 
 
380 aa  176  6e-43  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_3723  response regulator receiver (CheY) modulated Serine phosphatase  33.64 
 
 
378 aa  169  7e-41  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0976167  normal  0.601311 
 
 
-
 
NC_008312  Tery_0921  response regulator receiver modulated serine phosphatase  32.85 
 
 
378 aa  168  1e-40  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_2078  response regulator receiver modulated serine phosphatase  33.62 
 
 
379 aa  166  5e-40  Cyanothece sp. PCC 7425  Bacteria  normal  0.61197  normal 
 
 
-
 
NC_013223  Dret_0825  response regulator receiver modulated serine phosphatase  31.91 
 
 
526 aa  162  1e-38  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.126425  normal  0.339318 
 
 
-
 
NC_009439  Pmen_1929  response regulator receiver protein  29.8 
 
 
394 aa  148  1.0000000000000001e-34  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.310245 
 
 
-
 
NC_010571  Oter_0999  response regulator receiver modulated serine phosphatase  32.07 
 
 
602 aa  146  7.0000000000000006e-34  Opitutus terrae PB90-1  Bacteria  normal  0.118416  hitchhiker  0.00369461 
 
 
-
 
NC_007492  Pfl01_3849  response regulator receiver (CheY) modulated Serine phosphatase  29.89 
 
 
412 aa  144  3e-33  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.658628 
 
 
-
 
NC_009656  PSPA7_2359  putative two-component response regulator  31.18 
 
 
394 aa  144  3e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1088  response regulator  26.33 
 
 
380 aa  143  5e-33  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2467  response regulator receiver modulated serine phosphatase  31.21 
 
 
385 aa  143  5e-33  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2117  response regulator  27.91 
 
 
394 aa  142  9.999999999999999e-33  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0129975  n/a   
 
 
-
 
NC_009485  BBta_2152  putative response regulator, putative serine phosphatase  32.2 
 
 
434 aa  142  9.999999999999999e-33  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK0898  sigma factor sigB regulation protein  25.77 
 
 
380 aa  141  1.9999999999999998e-32  Bacillus cereus E33L  Bacteria  normal  0.503671  n/a   
 
 
-
 
NC_011773  BCAH820_1070  response regulator  25.56 
 
 
358 aa  140  3e-32  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  9.209800000000002e-41 
 
 
-
 
NC_008463  PA14_27940  putative two-component response regulator  30.9 
 
 
394 aa  140  3e-32  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_005957  BT9727_0915  sigma factor sigB regulation protein  25.56 
 
 
380 aa  140  3.9999999999999997e-32  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00116334  n/a   
 
 
-
 
NC_011772  BCG9842_B4268  response regulator  25.77 
 
 
380 aa  140  3.9999999999999997e-32  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00568873 
 
 
-
 
NC_011725  BCB4264_A1035  response regulator  25.77 
 
 
380 aa  140  3.9999999999999997e-32  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1912  response regulator receiver:stage II sporulation E  28.86 
 
 
394 aa  140  4.999999999999999e-32  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.432168  hitchhiker  0.00180426 
 
 
-
 
NC_011658  BCAH187_A1161  response regulator  25.56 
 
 
380 aa  140  4.999999999999999e-32  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0905  response regulator receiver modulated serine phosphatase  25.28 
 
 
380 aa  139  7.999999999999999e-32  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0930  response regulator  25.28 
 
 
380 aa  137  4e-31  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0994  response regulator  25.28 
 
 
380 aa  137  4e-31  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1682  response regulator receiver modulated serine phosphatase  29.8 
 
 
412 aa  137  5e-31  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3577  response regulator receiver protein  29.51 
 
 
393 aa  135  9.999999999999999e-31  Pseudomonas putida F1  Bacteria  decreased coverage  0.00266085  normal 
 
 
-
 
NC_002947  PP_2165  response regulator  29.51 
 
 
393 aa  134  1.9999999999999998e-30  Pseudomonas putida KT2440  Bacteria  normal  0.0249002  normal  0.813701 
 
 
-
 
NC_008789  Hhal_0205  response regulator receiver protein  32.08 
 
 
395 aa  135  1.9999999999999998e-30  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1706  response regulator receiver modulated serine phosphatase  29.18 
 
 
393 aa  134  3e-30  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.000168842 
 
 
-
 
NC_007614  Nmul_A2693  diguanylate cyclase  41.76 
 
 
302 aa  132  1.0000000000000001e-29  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_2082  anti-sigma-factor antagonist domain-containing protein  32.17 
 
 
566 aa  132  1.0000000000000001e-29  Polaromonas sp. JS666  Bacteria  normal  normal  0.806146 
 
 
-
 
NC_008009  Acid345_2946  response regulator receiver modulated serine phosphatase  29.68 
 
 
384 aa  131  2.0000000000000002e-29  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA0833  response regulator  29.9 
 
 
389 aa  130  5.0000000000000004e-29  Methylococcus capsulatus str. Bath  Bacteria  normal  0.106584  n/a   
 
 
-
 
NC_002939  GSU1643  GGDEF/response regulator receiver domain-containing protein  49.61 
 
 
316 aa  128  2.0000000000000002e-28  Geobacter sulfurreducens PCA  Bacteria  normal  0.176359  n/a   
 
 
-
 
NC_008148  Rxyl_2673  response regulator receiver modulated serine phosphatase  30.92 
 
 
389 aa  127  3e-28  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_0279  response regulator receiver modulated serine phosphatase  30.59 
 
 
394 aa  127  3e-28  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_32720  Response regulator  28.81 
 
 
394 aa  125  1e-27  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_2502  response regulator receiver modulated serine phosphatase  25 
 
 
384 aa  125  2e-27  Brachyspira murdochii DSM 12563  Bacteria  hitchhiker  0.00000000149084  n/a   
 
 
-
 
NC_008576  Mmc1_3580  response regulator receiver protein  31.37 
 
 
564 aa  122  9.999999999999999e-27  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_1846  response regulator receiver modulated diguanylate cyclase  43.18 
 
 
314 aa  120  3e-26  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0731  response regulator receiver modulated serine phosphatase  29.18 
 
 
396 aa  120  3e-26  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2000  response regulator receiver sensor signal transduction histidine kinase  41.83 
 
 
364 aa  121  3e-26  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000423497  n/a   
 
 
-
 
NC_007517  Gmet_1706  response regulator receiver modulated diguanylate cyclase  40 
 
 
324 aa  118  9.999999999999999e-26  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2192  response regulator receiver modulated diguanylate cyclase  45.74 
 
 
303 aa  118  1.9999999999999998e-25  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1524  putative PAS/PAC sensor protein  35.12 
 
 
409 aa  118  1.9999999999999998e-25  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_1723  response regulator receiver (CheY-like) modulated serine phosphatase  31.54 
 
 
381 aa  117  1.9999999999999998e-25  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00833768  n/a   
 
 
-
 
NC_009012  Cthe_0583  response regulator receiver protein  28.53 
 
 
394 aa  117  3.9999999999999997e-25  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0600  response regulator receiver protein  46.15 
 
 
301 aa  117  5e-25  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_0679  response regulator receiver  48.41 
 
 
337 aa  116  6e-25  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.0836964  n/a   
 
 
-
 
NC_008009  Acid345_4657  serine phosphatase  34.58 
 
 
467 aa  115  1.0000000000000001e-24  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.767582  normal 
 
 
-
 
NC_010814  Glov_2442  response regulator receiver modulated diguanylate cyclase  44.09 
 
 
316 aa  115  2.0000000000000002e-24  Geobacter lovleyi SZ  Bacteria  normal  0.103678  n/a   
 
 
-
 
NC_010814  Glov_0709  protein serine/threonine phosphatase  33.73 
 
 
716 aa  112  1.0000000000000001e-23  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1671  response regulator/GGDEF domain-containing protein  40.15 
 
 
322 aa  111  2.0000000000000002e-23  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1112  response regulator receiver domain-containing protein  27.85 
 
 
399 aa  112  2.0000000000000002e-23  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_3770  response regulator receiver protein  28.99 
 
 
391 aa  109  9.000000000000001e-23  Roseiflexus sp. RS-1  Bacteria  normal  unclonable  0.0000112062 
 
 
-
 
NC_002977  MCA1203  response regulator  39.58 
 
 
634 aa  108  2e-22  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1542  response regulator receiver domain-containing protein  28.77 
 
 
567 aa  108  2e-22  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.3365  normal  0.98827 
 
 
-
 
NC_014148  Plim_3158  Stage II sporulation E family protein  31.8 
 
 
443 aa  107  3e-22  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1615  response regulator receiver protein  40.49 
 
 
228 aa  107  5e-22  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.00000138875  n/a   
 
 
-
 
NC_008541  Arth_3890  response regulator receiver protein  28.28 
 
 
378 aa  107  5e-22  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0140  response regulator receiver protein  26.07 
 
 
371 aa  106  5e-22  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_2157  response regulator receiver protein  26.93 
 
 
577 aa  105  1e-21  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1634  response regulator receiver protein  50 
 
 
188 aa  104  2e-21  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_20780  putative two-component response regulator  26.61 
 
 
571 aa  104  3e-21  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.283191  normal 
 
 
-
 
NC_009712  Mboo_0643  stage II sporulation E family protein  31.03 
 
 
708 aa  103  4e-21  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.948489 
 
 
-
 
NC_008576  Mmc1_3534  response regulator receiver protein  25.21 
 
 
393 aa  103  4e-21  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_3688  response regulator receiver protein  27.22 
 
 
564 aa  103  6e-21  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_3851  response regulator receiver modulated diguanylate cyclase  38.71 
 
 
634 aa  103  6e-21  Thauera sp. MZ1T  Bacteria  normal  0.0571122  n/a   
 
 
-
 
NC_009656  PSPA7_1784  putative two-component response regulator  26.61 
 
 
571 aa  103  6e-21  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1830  response regulator receiver modulated diguanylate cyclase  29.03 
 
 
941 aa  102  1e-20  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2453  serine phosphatase  30.54 
 
 
438 aa  102  1e-20  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_4363  response regulator receiver protein  25.2 
 
 
563 aa  101  2e-20  Pseudomonas putida KT2440  Bacteria  normal  normal  0.470941 
 
 
-
 
NC_011831  Cagg_2931  protein serine phosphatase with GAF(s) sensor(s)  31.89 
 
 
563 aa  101  2e-20  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0258566  normal  0.261187 
 
 
-
 
NC_008228  Patl_1594  response regulator receiver protein  26.46 
 
 
548 aa  102  2e-20  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2819  response regulator receiver protein  27.3 
 
 
562 aa  101  2e-20  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0360472 
 
 
-
 
NC_011831  Cagg_2419  cyclic nucleotide-binding protein  34.3 
 
 
563 aa  100  3e-20  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.871595  normal 
 
 
-
 
NC_011138  MADE_01717  putative response regulator  22.79 
 
 
568 aa  101  3e-20  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_1114  response regulator receiver modulated serine phosphatase  27.59 
 
 
391 aa  101  3e-20  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1504  response regulator receiver protein  25.2 
 
 
563 aa  100  5e-20  Pseudomonas putida F1  Bacteria  normal  0.709749  normal  0.106415 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>