Gene Shewana3_2013 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_2013 
Symbol 
ID4476377 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp2399717 
End bp2400952 
Gene Length1236 bp 
Protein Length411 aa 
Translation table11 
GC content51% 
IMG OID639726595 
Productresponse regulator receiver modulated serine phosphatase 
Protein accessionYP_869650 
Protein GI117920458 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.155477 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0155604 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGCTCT CTTCGCTCAC ATCGATTCAA GCCGTTACCT TGTCTGTGCT GGTCGTGGAA 
GACACAGATT GCGAGCGCTT TTATATCACT CACCTGCTAA GACAGTTTGG TTGGTTGGTC
GAGAGTCGCA GTAACGGTAA GGCTGCGCTG GATTACTTGC AGCAGAATGA AGTGCATATT
TTAGTCAGCG ATTGGCGCAT GCCTGAGATG AGCGGCATCG AGTTGTGCCA AATCGTTAAA
AATAATCATC TGCCGCCCTT TGTGATCTTG CTGACGGCCA ATAATCAGAC AGCCGATATT
GTGTTAGGTA TTGAAGCGGG CGCCGATGAC TTTATCTGTA AGCCTTTTCT ACCAGAACTG
TTAAAGGTTA GGATGTTAGC TGCGATGCGT ATCGTGCAGC TGCAACATAA CTTGAGCCGT
AACATTCAAC TGTTACAGCA AGGGCTTGCG AAAGAATCTG CCTTGCTCAG CACCATAAAA
CAGGATTTGT TTTCTGCCGC TAAGGTGCAG CGAGAATTAC TGCCCCGCAG TAAAACCTTG
CCAAGGGATT GGCAGTTACA CCATGAGTTT CAGCCCGCGA GTTATCTTGC TGGCGATCTC
TATCAATGTT TCGATCTTGG CGATGATCAA CTCGGGTTTT ATCTGATTGA TGCCGCGGGT
CATGGGGTCG CCGCCGCGCT GCAGAGTGTC AGCCTTGCCC AGCGTCTGTC GATGGAACGT
ACCGATTGGT GCGGATTATC GCCCCAAGAA ATAGTGAATC AGGTTAATCG CGAGCTAAGC
GACCCAGACA ATACTGGCCG CTTTGTGACT CTGTTACTCG GCAAGATCAA TACGCTGACG
GGTGAACTAA GGCTGTGCAG CGCCGGCCAT CCCGCGCCGT TACTGCTCAC CGAGACTAGC
TGCGAGCCCT TGCCCCTCGA CACTGAGTTA CCGCTTGGGA TCCATGGCGC CGTGCAGTAT
CAAGATCAGC TAGTCACCCT CTTACCTGGC AGTCGCTTGT TGTTATTTTC CGATGGTACC
TATGAGTGCC AACACCCCAA GTTCGGTTTT TTCGGCCAAG CGCGTTTGCA AACCCTGTGC
TCGAAAGCCA ACAGCTTGAG CGATGAAGCC TTGCTGCATC ACTTGAGCCA TGCCTTACAA
CTCTGGCAAG GCGGCACAAC TCAAGATGAT ATTTCGATGA TGTTAATTAC CTACCCGTCA
GCCAACTATG CCAATGCGGC TTTGGAGGCA TTATGA
 
Protein sequence
MPLSSLTSIQ AVTLSVLVVE DTDCERFYIT HLLRQFGWLV ESRSNGKAAL DYLQQNEVHI 
LVSDWRMPEM SGIELCQIVK NNHLPPFVIL LTANNQTADI VLGIEAGADD FICKPFLPEL
LKVRMLAAMR IVQLQHNLSR NIQLLQQGLA KESALLSTIK QDLFSAAKVQ RELLPRSKTL
PRDWQLHHEF QPASYLAGDL YQCFDLGDDQ LGFYLIDAAG HGVAAALQSV SLAQRLSMER
TDWCGLSPQE IVNQVNRELS DPDNTGRFVT LLLGKINTLT GELRLCSAGH PAPLLLTETS
CEPLPLDTEL PLGIHGAVQY QDQLVTLLPG SRLLLFSDGT YECQHPKFGF FGQARLQTLC
SKANSLSDEA LLHHLSHALQ LWQGGTTQDD ISMMLITYPS ANYANAALEA L