| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2013 |
|---|
| Symbol | |
|---|
| ID | 4476377 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 2399717 |
|---|
| End bp | 2400952 |
|---|
| Gene Length | 1236 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639726595 |
|---|
| Product | response regulator receiver modulated serine phosphatase |
|---|
| Protein accession | YP_869650 |
|---|
| Protein GI | 117920458 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.155477 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0155604 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCTCT CTTCGCTCAC ATCGATTCAA GCCGTTACCT TGTCTGTGCT GGTCGTGGAA
GACACAGATT GCGAGCGCTT TTATATCACT CACCTGCTAA GACAGTTTGG TTGGTTGGTC
GAGAGTCGCA GTAACGGTAA GGCTGCGCTG GATTACTTGC AGCAGAATGA AGTGCATATT
TTAGTCAGCG ATTGGCGCAT GCCTGAGATG AGCGGCATCG AGTTGTGCCA AATCGTTAAA
AATAATCATC TGCCGCCCTT TGTGATCTTG CTGACGGCCA ATAATCAGAC AGCCGATATT
GTGTTAGGTA TTGAAGCGGG CGCCGATGAC TTTATCTGTA AGCCTTTTCT ACCAGAACTG
TTAAAGGTTA GGATGTTAGC TGCGATGCGT ATCGTGCAGC TGCAACATAA CTTGAGCCGT
AACATTCAAC TGTTACAGCA AGGGCTTGCG AAAGAATCTG CCTTGCTCAG CACCATAAAA
CAGGATTTGT TTTCTGCCGC TAAGGTGCAG CGAGAATTAC TGCCCCGCAG TAAAACCTTG
CCAAGGGATT GGCAGTTACA CCATGAGTTT CAGCCCGCGA GTTATCTTGC TGGCGATCTC
TATCAATGTT TCGATCTTGG CGATGATCAA CTCGGGTTTT ATCTGATTGA TGCCGCGGGT
CATGGGGTCG CCGCCGCGCT GCAGAGTGTC AGCCTTGCCC AGCGTCTGTC GATGGAACGT
ACCGATTGGT GCGGATTATC GCCCCAAGAA ATAGTGAATC AGGTTAATCG CGAGCTAAGC
GACCCAGACA ATACTGGCCG CTTTGTGACT CTGTTACTCG GCAAGATCAA TACGCTGACG
GGTGAACTAA GGCTGTGCAG CGCCGGCCAT CCCGCGCCGT TACTGCTCAC CGAGACTAGC
TGCGAGCCCT TGCCCCTCGA CACTGAGTTA CCGCTTGGGA TCCATGGCGC CGTGCAGTAT
CAAGATCAGC TAGTCACCCT CTTACCTGGC AGTCGCTTGT TGTTATTTTC CGATGGTACC
TATGAGTGCC AACACCCCAA GTTCGGTTTT TTCGGCCAAG CGCGTTTGCA AACCCTGTGC
TCGAAAGCCA ACAGCTTGAG CGATGAAGCC TTGCTGCATC ACTTGAGCCA TGCCTTACAA
CTCTGGCAAG GCGGCACAAC TCAAGATGAT ATTTCGATGA TGTTAATTAC CTACCCGTCA
GCCAACTATG CCAATGCGGC TTTGGAGGCA TTATGA
|
|---|
| Protein sequence | MPLSSLTSIQ AVTLSVLVVE DTDCERFYIT HLLRQFGWLV ESRSNGKAAL DYLQQNEVHI
LVSDWRMPEM SGIELCQIVK NNHLPPFVIL LTANNQTADI VLGIEAGADD FICKPFLPEL
LKVRMLAAMR IVQLQHNLSR NIQLLQQGLA KESALLSTIK QDLFSAAKVQ RELLPRSKTL
PRDWQLHHEF QPASYLAGDL YQCFDLGDDQ LGFYLIDAAG HGVAAALQSV SLAQRLSMER
TDWCGLSPQE IVNQVNRELS DPDNTGRFVT LLLGKINTLT GELRLCSAGH PAPLLLTETS
CEPLPLDTEL PLGIHGAVQY QDQLVTLLPG SRLLLFSDGT YECQHPKFGF FGQARLQTLC
SKANSLSDEA LLHHLSHALQ LWQGGTTQDD ISMMLITYPS ANYANAALEA L
|
|---|
| |