More than 300 homologs were found in PanDaTox collection
for query gene PP_2165 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_2165  response regulator  100 
 
 
393 aa  790    Pseudomonas putida KT2440  Bacteria  normal  0.0249002  normal  0.813701 
 
 
-
 
NC_004578  PSPTO_2117  response regulator  82.49 
 
 
394 aa  652    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0129975  n/a   
 
 
-
 
NC_007005  Psyr_1912  response regulator receiver:stage II sporulation E  82.99 
 
 
394 aa  655    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.432168  hitchhiker  0.00180426 
 
 
-
 
NC_007492  Pfl01_3849  response regulator receiver (CheY) modulated Serine phosphatase  87.02 
 
 
412 aa  688    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.658628 
 
 
-
 
NC_010322  PputGB1_1706  response regulator receiver modulated serine phosphatase  98.98 
 
 
393 aa  782    Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.000168842 
 
 
-
 
NC_010501  PputW619_1682  response regulator receiver modulated serine phosphatase  95.94 
 
 
412 aa  759    Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3577  response regulator receiver protein  99.75 
 
 
393 aa  788    Pseudomonas putida F1  Bacteria  decreased coverage  0.00266085  normal 
 
 
-
 
NC_009656  PSPA7_2359  putative two-component response regulator  79.39 
 
 
394 aa  627  1e-178  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1929  response regulator receiver protein  78.88 
 
 
394 aa  625  1e-178  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.310245 
 
 
-
 
NC_008463  PA14_27940  putative two-component response regulator  78.88 
 
 
394 aa  623  1e-177  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_32720  Response regulator  74.05 
 
 
394 aa  570  1e-161  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1112  response regulator receiver domain-containing protein  46.37 
 
 
399 aa  344  1e-93  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_1479  response regulator receiver protein  39.9 
 
 
402 aa  285  1.0000000000000001e-75  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1472  serine phosphatase  35.9 
 
 
379 aa  223  3e-57  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.95872  n/a   
 
 
-
 
NC_008751  Dvul_2526  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  53.42 
 
 
715 aa  168  2e-40  Desulfovibrio vulgaris DP4  Bacteria  normal  0.263284  normal  0.0502692 
 
 
-
 
NC_011769  DvMF_1544  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  45.37 
 
 
739 aa  167  2e-40  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.498595 
 
 
-
 
NC_007948  Bpro_2082  anti-sigma-factor antagonist domain-containing protein  34.55 
 
 
566 aa  167  4e-40  Polaromonas sp. JS666  Bacteria  normal  normal  0.806146 
 
 
-
 
NC_010506  Swoo_1648  response regulator receiver protein  33.33 
 
 
367 aa  164  3e-39  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.0057956  normal 
 
 
-
 
NC_008321  Shewmr4_1312  response regulator receiver protein  32 
 
 
367 aa  157  2e-37  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000399806  normal 
 
 
-
 
NC_008322  Shewmr7_1379  response regulator receiver protein  32 
 
 
367 aa  157  2e-37  Shewanella sp. MR-7  Bacteria  hitchhiker  0.00673289  normal  0.16507 
 
 
-
 
NC_009438  Sputcn32_2546  response regulator receiver protein  32.83 
 
 
376 aa  158  2e-37  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_3074  response regulator receiver modulated metal dependent phosphohydrolase  56.93 
 
 
363 aa  157  3e-37  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013173  Dbac_2828  response regulator receiver sensor signal transduction histidine kinase  52.86 
 
 
410 aa  156  5.0000000000000005e-37  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3036  response regulator receiver protein  31.72 
 
 
367 aa  155  1e-36  Shewanella sediminis HAW-EB3  Bacteria  normal  0.697745  hitchhiker  0.00756104 
 
 
-
 
NC_009901  Spea_1391  response regulator receiver protein  35.06 
 
 
368 aa  155  2e-36  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3196  response regulator  32.59 
 
 
367 aa  154  2.9999999999999998e-36  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_1372  response regulator receiver protein  32.36 
 
 
367 aa  154  2.9999999999999998e-36  Shewanella sp. ANA-3  Bacteria  normal  0.0119088  hitchhiker  0.0000873565 
 
 
-
 
NC_007519  Dde_0532  response regulator receiver /GGDEF/PAS/PAC domain-containing protein  53.24 
 
 
715 aa  153  5e-36  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1467  response regulator receiver protein  30 
 
 
367 aa  152  1e-35  Shewanella baltica OS223  Bacteria  normal  0.0140274  normal 
 
 
-
 
NC_013173  Dbac_0913  response regulator receiver sensor hybrid histidine kinase  50.32 
 
 
544 aa  152  1e-35  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0999  response regulator receiver modulated serine phosphatase  34.64 
 
 
602 aa  152  1e-35  Opitutus terrae PB90-1  Bacteria  normal  0.118416  hitchhiker  0.00369461 
 
 
-
 
NC_009052  Sbal_2896  response regulator receiver protein  30 
 
 
367 aa  151  2e-35  Shewanella baltica OS155  Bacteria  hitchhiker  0.00201335  n/a   
 
 
-
 
NC_009665  Shew185_2906  response regulator receiver protein  30 
 
 
367 aa  151  2e-35  Shewanella baltica OS185  Bacteria  normal  0.0132666  n/a   
 
 
-
 
NC_009997  Sbal195_3038  response regulator receiver protein  30 
 
 
367 aa  150  3e-35  Shewanella baltica OS195  Bacteria  normal  0.0232368  normal 
 
 
-
 
NC_008148  Rxyl_2673  response regulator receiver modulated serine phosphatase  31.78 
 
 
389 aa  150  3e-35  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1396  response regulator receiver protein  33.46 
 
 
367 aa  149  7e-35  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00425013  normal  0.314583 
 
 
-
 
NC_007954  Sden_1356  response regulator receiver  32.16 
 
 
386 aa  149  8e-35  Shewanella denitrificans OS217  Bacteria  normal  0.235342  n/a   
 
 
-
 
NC_011729  PCC7424_3648  response regulator receiver modulated serine phosphatase  30.9 
 
 
380 aa  148  1.0000000000000001e-34  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013161  Cyan8802_1870  response regulator receiver modulated serine phosphatase  31.85 
 
 
379 aa  147  4.0000000000000006e-34  Cyanothece sp. PCC 8802  Bacteria  normal  0.177859  normal 
 
 
-
 
NC_011726  PCC8801_1844  response regulator receiver modulated serine phosphatase  31.85 
 
 
379 aa  146  5e-34  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009012  Cthe_0583  response regulator receiver protein  28.61 
 
 
394 aa  145  8.000000000000001e-34  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_1566  response regulator receiver (CheY) modulated Serine phosphatase  31.5 
 
 
396 aa  144  2e-33  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.244929 
 
 
-
 
NC_008345  Sfri_2806  response regulator receiver protein  31.16 
 
 
373 aa  144  2e-33  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_0921  response regulator receiver modulated serine phosphatase  30.52 
 
 
378 aa  139  6e-32  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_0176  response regulator receiver modulated serine phosphatase  29.19 
 
 
378 aa  138  2e-31  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0064  histidine kinase  46 
 
 
598 aa  138  2e-31  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008700  Sama_2267  response regulator receiver protein  30.56 
 
 
367 aa  137  2e-31  Shewanella amazonensis SB2B  Bacteria  normal  0.0287525  normal  0.0560142 
 
 
-
 
NC_011312  VSAL_I1082  response regulator  29.61 
 
 
367 aa  135  9.999999999999999e-31  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2013  response regulator receiver modulated serine phosphatase  30.14 
 
 
411 aa  135  9.999999999999999e-31  Shewanella sp. ANA-3  Bacteria  normal  0.155477  normal  0.0155604 
 
 
-
 
NC_002977  MCA1440  response regulator  29.51 
 
 
391 aa  134  1.9999999999999998e-30  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0677305  n/a   
 
 
-
 
NC_009523  RoseRS_3770  response regulator receiver protein  29.97 
 
 
391 aa  134  3e-30  Roseiflexus sp. RS-1  Bacteria  normal  unclonable  0.0000112062 
 
 
-
 
NC_008751  Dvul_1875  response regulator receiver modulated metal dependent phosphohydrolase  38.6 
 
 
361 aa  134  3e-30  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_002881  response regulator  31.65 
 
 
368 aa  133  6e-30  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_03091  hypothetical protein  31.29 
 
 
368 aa  132  9e-30  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013173  Dbac_2325  response regulator receiver modulated metal dependent phosphohydrolase  47.41 
 
 
362 aa  131  2.0000000000000002e-29  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.663275  n/a   
 
 
-
 
NC_009767  Rcas_1114  response regulator receiver modulated serine phosphatase  30.46 
 
 
391 aa  131  2.0000000000000002e-29  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A0568  response regulator  30.38 
 
 
368 aa  130  3e-29  Vibrio cholerae O395  Bacteria  hitchhiker  0.00216047  n/a   
 
 
-
 
NC_007519  Dde_2457  metal dependent phosphohydrolase  31.76 
 
 
358 aa  127  5e-28  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2673  response regulator receiver modulated serine phosphatase  29.97 
 
 
392 aa  125  9e-28  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_0495  response regulator receiver protein  29.68 
 
 
423 aa  124  3e-27  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_1432  response regulator receiver modulated serine phosphatase  25 
 
 
407 aa  123  5e-27  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2943  response regulator receiver modulated serine phosphatase  25.29 
 
 
470 aa  122  8e-27  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2461  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  41.33 
 
 
581 aa  122  9e-27  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011313  VSAL_II0329  putative response regulator  27.22 
 
 
415 aa  122  9.999999999999999e-27  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0905  response regulator receiver modulated serine phosphatase  26.05 
 
 
380 aa  122  9.999999999999999e-27  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3723  response regulator receiver (CheY) modulated Serine phosphatase  28.27 
 
 
378 aa  122  1.9999999999999998e-26  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0976167  normal  0.601311 
 
 
-
 
NC_008789  Hhal_0205  response regulator receiver protein  28.7 
 
 
395 aa  121  3e-26  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2078  response regulator receiver modulated serine phosphatase  28.86 
 
 
379 aa  121  3e-26  Cyanothece sp. PCC 7425  Bacteria  normal  0.61197  normal 
 
 
-
 
NC_003909  BCE_1088  response regulator  25.37 
 
 
380 aa  120  3.9999999999999996e-26  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0302  response regulator receiver modulated serine phosphatase  27.52 
 
 
400 aa  120  6e-26  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3465  putative PAS/PAC sensor protein  43.38 
 
 
489 aa  120  6e-26  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4268  response regulator  26.05 
 
 
380 aa  119  7e-26  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00568873 
 
 
-
 
NC_011831  Cagg_1830  response regulator receiver modulated diguanylate cyclase  30.52 
 
 
941 aa  119  7e-26  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A1035  response regulator  26.43 
 
 
380 aa  119  7.999999999999999e-26  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2096  signal transduction histidine kinase  45.45 
 
 
526 aa  119  7.999999999999999e-26  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.0713574 
 
 
-
 
NC_009784  VIBHAR_05599  response regulator receiver  25.87 
 
 
560 aa  119  9e-26  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008741  Dvul_3024  response regulator receiver modulated metal dependent phosphohydrolase  42.86 
 
 
363 aa  118  9.999999999999999e-26  Desulfovibrio vulgaris DP4  Bacteria  normal  0.433593  n/a   
 
 
-
 
NC_005957  BT9727_0915  sigma factor sigB regulation protein  26.05 
 
 
380 aa  118  1.9999999999999998e-25  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00116334  n/a   
 
 
-
 
NC_011658  BCAH187_A1161  response regulator  26.05 
 
 
380 aa  117  3e-25  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0898  sigma factor sigB regulation protein  25.81 
 
 
380 aa  117  3.9999999999999997e-25  Bacillus cereus E33L  Bacteria  normal  0.503671  n/a   
 
 
-
 
NC_013457  VEA_000007  serine phosphatase RsbU regulator of sigma subunit  26.84 
 
 
397 aa  116  5e-25  Vibrio sp. Ex25  Bacteria  normal  0.441967  n/a   
 
 
-
 
NC_011769  DvMF_1419  signal transduction histidine kinase  42.11 
 
 
551 aa  116  6.9999999999999995e-25  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011773  BCAH820_1070  response regulator  26.32 
 
 
358 aa  115  1.0000000000000001e-24  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  9.209800000000002e-41 
 
 
-
 
NC_005945  BAS0930  response regulator  25.31 
 
 
380 aa  115  2.0000000000000002e-24  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0994  response regulator  25.31 
 
 
380 aa  115  2.0000000000000002e-24  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_2887  response regulator receiver modulated serine phosphatase  27.11 
 
 
423 aa  115  2.0000000000000002e-24  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_002967  TDE1969  sigma-54 dependent transcriptional regulator/response regulator  46.83 
 
 
473 aa  114  3e-24  Treponema denticola ATCC 35405  Bacteria  normal  0.440374  n/a   
 
 
-
 
NC_007519  Dde_1522  histidine kinase  38.65 
 
 
544 aa  114  3e-24  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2453  two component, sigma54 specific, Fis family transcriptional regulator  44.62 
 
 
461 aa  112  9e-24  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000196128  normal 
 
 
-
 
NC_013132  Cpin_6438  putative two component, sigma54 specific, transcriptional regulator, Fis family  37.5 
 
 
394 aa  111  2.0000000000000002e-23  Chitinophaga pinensis DSM 2588  Bacteria  decreased coverage  0.00615091  normal  0.383003 
 
 
-
 
NC_013173  Dbac_2645  response regulator receiver modulated metal dependent phosphohydrolase  32.96 
 
 
364 aa  111  3e-23  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_2946  response regulator receiver modulated serine phosphatase  27.59 
 
 
384 aa  110  3e-23  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA0833  response regulator  27.09 
 
 
389 aa  110  4.0000000000000004e-23  Methylococcus capsulatus str. Bath  Bacteria  normal  0.106584  n/a   
 
 
-
 
NC_008751  Dvul_2459  multi-sensor signal transduction histidine kinase  43.55 
 
 
489 aa  110  4.0000000000000004e-23  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.854352 
 
 
-
 
NC_009952  Dshi_3485  response regulator  25.5 
 
 
422 aa  110  5e-23  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0017  two component, sigma54 specific, Fis family transcriptional regulator  41.43 
 
 
459 aa  110  5e-23  Desulfovibrio vulgaris DP4  Bacteria  normal  0.120309  normal 
 
 
-
 
NC_007519  Dde_1723  response regulator receiver (CheY-like) modulated serine phosphatase  30.16 
 
 
381 aa  109  8.000000000000001e-23  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00833768  n/a   
 
 
-
 
NC_002939  GSU1320  sigma-54 dependent DNA-binding response regulator  40.15 
 
 
460 aa  108  1e-22  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2467  response regulator receiver modulated serine phosphatase  27.3 
 
 
385 aa  108  2e-22  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_1461  two component, sigma54 specific, transcriptional regulator, Fis family  39.77 
 
 
491 aa  108  2e-22  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.750458 
 
 
-
 
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