| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3577 |
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| Symbol | |
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| ID | 5195239 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 3993313 |
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| End bp | 3994494 |
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| Gene Length | 1182 bp |
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| Protein Length | 393 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640588032 |
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| Product | response regulator receiver protein |
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| Protein accession | YP_001268885 |
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| Protein GI | 148548783 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00266085 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAAAA CCAGTGCAAC GCTGCTGATC ATCGATGACG ACGACGTGGT CCGTGCCAGC
CTCGCCGCCT ACCTTGAAGA CAGTGGTTTC AGCGTCCTCC AGGCCAGTAA TGGCCAGCAG
GGGCTTCAGG TCTTCGAAGA ACACCAGCCC GACCTCGTGA TCTGCGATCT GCGCATGCCG
CAGATGGGCG GCCTCGAACT GATCCGTCAG GTCAGCGAGC GTGCGCCGCA GTTGCCGGTG
ATCGTGGTGT CCGGTGCCGG CGTCATGAGT GATGCGGTGG AAGCGTTGCG CCTGGGCGCC
GCCGACTACC TTATCAAGCC GCTGGAAGAC CTGGCCGTAC TCGAGCATTC GGTGCGCCGC
GCCCTCGACC GCTCGCGCCT TGTGCTGGAA AACCAGCGCT ACCGCGACAA GCTCGAAGCC
GCCAACCGTG AACTGGAGGC TAGCCTGCAC CTGTTGCAGG AGGACCAGAC CGCCGGTCGC
CAGGTGCAGA TGAACATGTT GCCGGAAAGC CCCTGGGTGG CCGGCGAGTT CGCCTTCGAG
CACCAGATCA TCCCGTCGTT GTACCTTTCG GGGGATTTTG TCGATTATTT CCGCGTGGAC
GAGCGGCGCA TTGCTTTCTA CCTCGCCGAT GTATCCGGGC ATGGGGCGTC GTCGGCCTTT
GTCACCGTGC TGTTGAAATT CATGACCACG CGCCTCATGT TCGAGCTCAA GCGCAGCAGG
ATGCGTGAGT TCAAGCCGTC TGAAGTGCTC AGCCACATCA ACCGCGGCCT GATCAACAGC
AAGCTGGGCA AGCACGTCAC CATGGTCGGC GGGGTGATCG ACGAAGAGTC CGGCCTGCTG
ACCTACGCTG TCGGCGGCCA TTTGCCGTTG CCGGTACTGT ACACCCCCGA GCATTGCCGC
TACCTGGAAG GCCGCGGCCT GCCGGTGGGG TTGTTCGATG AGGCCACCTA CCAGGACCTG
GTGGTGGAGC TGCCCCCGCA GTTCAGCCTC AGCCTGATGT CCGATGGCAT TCTGGACCTT
TTGCCGGGTG ATACGCTCAA AGATAAAGAA GCCGCCTTGC CGGAGATCGT CAAGGCAGCA
GGTGGCAGTC TGGATGGGCT GCGTCAACGA TTTGGATTGG CTACGCTTGG GGAGATGCCG
GATGATATCG CCCTATTGGT GTTGAGCAGG AACCTTCAAT GA
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| Protein sequence | MQKTSATLLI IDDDDVVRAS LAAYLEDSGF SVLQASNGQQ GLQVFEEHQP DLVICDLRMP
QMGGLELIRQ VSERAPQLPV IVVSGAGVMS DAVEALRLGA ADYLIKPLED LAVLEHSVRR
ALDRSRLVLE NQRYRDKLEA ANRELEASLH LLQEDQTAGR QVQMNMLPES PWVAGEFAFE
HQIIPSLYLS GDFVDYFRVD ERRIAFYLAD VSGHGASSAF VTVLLKFMTT RLMFELKRSR
MREFKPSEVL SHINRGLINS KLGKHVTMVG GVIDEESGLL TYAVGGHLPL PVLYTPEHCR
YLEGRGLPVG LFDEATYQDL VVELPPQFSL SLMSDGILDL LPGDTLKDKE AALPEIVKAA
GGSLDGLRQR FGLATLGEMP DDIALLVLSR NLQ
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