| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2943 |
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| Symbol | |
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| ID | 5610681 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3563255 |
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| End bp | 3564667 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933883 |
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| Product | response regulator receiver modulated serine phosphatase |
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| Protein accession | YP_001474678 |
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| Protein GI | 157376078 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACAATGG TTATGGAAGA GTCTGCGACT TCATTTAGGC TGCAAACAGA AGGCCTCTCC
GTCCTTGTGG TTGAAGATAC TCACAGTGAA CGCTGCTTTA TCACACACTT ATTAGAGATG
ATGGGATTAA AAGTAACAAG CTGTAGCAGT GGAGAGGAAG CAATCGAGTC ATATCAACAA
GAAAAGGCTG ACATGATTAT CAGTGACTGG AGGATGCCTG GAATGACCGG ACCTGAGCTC
TGTCAATATC TGAAAAACAT TGATCCAAGC CTTTACATTA TTCTACTGAC AGCCAATAAC
CAAACTAAAC ATACAGTTAT CGGCATTGAA TCCGGTGCCG ATGACTTTCT GACGAAACCC
TTTATCCCAA GCATACTCAA AGCCAGAGTA TTAGCCGGCG CGCGCATTGT GAACATGCAG
CGTCAACTTG AAAACAGAAA CAGTGAACTC AATACATCCC TGACAAAGGA ACAGGCCTAC
CTGCAGCAGA TACAGAAAGA TATTGATAGC GCCGCTAAAT TGCAAGGCTC GCTGCTTCCG
ACTTCAAGCA CACTACAGAA CGGCTGGAAA CTTGCCACTC AATTTCAGCC GGCACAAGAA
CTTGCCGGTG ATATATTTCA ATGTCTGGAG ATCGATGACT CTCATCTGGG ATTTTACCTC
TTAGATGTTA CAGGTCATGG GATCGCAGCC TCAATGCAGA GCTTCACCTT AGCTCAAAGG
TTAAGTTGTA ATAGCTGTGA TTGGGCGAGC CTGGATCCCG CGCTCATTGT CACTCAACTA
AACGCTGACT TTGAAGATCC TGAACATTCA GGCAGGTTTG CTACGTTAGT GTTGGGGGTT
GTTAATACGA CTAGCGGCAA AGTTAAGTTA ACGATTGCCG GCCACCCACT TCCCATACTG
ATTAAAGGGG ATGAAACAGA GGTAATGGAT CTCATTTCCG GCATACCATT AGGCATAGAT
AGCCATTACC ATTATGAGTT CAACACCTTT CTTCTAAGCC CTGAGCAGCA GCTACTCCTG
TATTCCGATG GTCTATACGA ATGTCGTCAC CCCTCTTTTG GTGAGTTTGG ACAGCAAAGA
CTAATCAATA GTTGCAGCAA GGCACACCAA CTTAAACCAG AATCATTACT TCATTATCTG
GCTCACGCCA TCGATCTTTG GCAAGAAAAA GTCCCCCAGG ATGACATCTC TATGATGCTG
CTCTCCGTAC CAAAGCTCTC AGTCTCAGGA ACAAATAATC GGGAACGCAC AGTAAACTCG
GCCCCTATTA ATATCGATTC GGCCGATTAT CCTCAGCCGT TCAAAAATGA GCTTCTGATC
GATAGTGAAC TGATTGATAG TGAACCTATC GTTACTGAAT TAACAAGGAA CAGGTTTCCG
GGTAATAAAT TTAGTAGCGA ATCTATTAGC TAA
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| Protein sequence | MTMVMEESAT SFRLQTEGLS VLVVEDTHSE RCFITHLLEM MGLKVTSCSS GEEAIESYQQ
EKADMIISDW RMPGMTGPEL CQYLKNIDPS LYIILLTANN QTKHTVIGIE SGADDFLTKP
FIPSILKARV LAGARIVNMQ RQLENRNSEL NTSLTKEQAY LQQIQKDIDS AAKLQGSLLP
TSSTLQNGWK LATQFQPAQE LAGDIFQCLE IDDSHLGFYL LDVTGHGIAA SMQSFTLAQR
LSCNSCDWAS LDPALIVTQL NADFEDPEHS GRFATLVLGV VNTTSGKVKL TIAGHPLPIL
IKGDETEVMD LISGIPLGID SHYHYEFNTF LLSPEQQLLL YSDGLYECRH PSFGEFGQQR
LINSCSKAHQ LKPESLLHYL AHAIDLWQEK VPQDDISMML LSVPKLSVSG TNNRERTVNS
APINIDSADY PQPFKNELLI DSELIDSEPI VTELTRNRFP GNKFSSESIS
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