Gene Dret_1524 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1524 
Symbol 
ID8419353 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1767581 
End bp1768810 
Gene Length1230 bp 
Protein Length409 aa 
Translation table11 
GC content57% 
IMG OID645038098 
Productputative PAS/PAC sensor protein 
Protein accessionYP_003198388 
Protein GI258405646 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTCATT GCCACACTTC GGGCTCATCC TCGCAAGCGA GTACCCTCCA GGCCATCCTG 
GAAACCGCTG TTGACGGCAT TGTCGTCATT ACCCCCCAGG GGACCATCCA GGCGGTCAAC
AAGGCCATCA GCACCATTTT TGGGTATTCC CGAGAATGGC TCCTCGGCCA GCCGGTGTCT
GTGCTTATGC CCGAGCCCTA CCGGAGCACA CATCAATCGT TTATCCAGAG GTACCTGCAA
ACAGGCGAAG GCCATATTTT GGGGGTTGGA GGCCGCGAGG TGCCCGGGCG CACATCCGAC
GGCTCCATTA TCCCCCTTGA GTTGGGGGTC AGCGAAATCA CTTCTGGAGA CGACCATCTC
TTTGCGGCAA TTTTACGGGA TATAACTGAA CGCAAAGCGA GCCAACAGGC CCTCATGGAA
AGCTACCTGG AGTTGGAAAA TAAACAAAAA TTGCTGGACA AAGATCTGGA GGCGGCGGCC
AATATTCAAC TCAGTCTTTT ACCGTCCAAT TTTTCCCCTC TCCCGGGGCT CGACGTGGGG
TGGGTCTTTG ATCCCAGTCT TGAAATCGGC GGAGACATTT TCAACCTCGT TCCCTTGCAA
ACGGGGCATT TGGGGATGTA CATCCTGGAC GTCAGCGGCC ACGGGGTCCC TGCGGCTTTG
GTAGCCGTTT CCGCGGCCCA GGCCATGTAC CGGCACACCC TGGTGCGCAG CGAATCTTGG
CCGGGACGGG AAGGGCCCCC AACTCCTCCG GCAACAGTGC TGGAACAGCT GGACGCCGAG
TTTCCCTTGG AACGCTTCGA CACCTATTTT ACCATGTCCT ATGTGGTAAT GGACCTCGAA
AGTGCAACGT TGCACTATTC CAACGCCGGG CATCCGGCTC CGCTCTTGAT CCGCAATTCA
GGGGAGGTGG TCTCGCTGGA GACCGAAGGA ACGCTCATCG GGCTCGGGGG GCTCCGTCCT
TTTACCACCG AACAGGACAC GTTGCACCCT GGTGATGTCT TGGTCCTGTA TACCGACGGG
ATCTACGAGC AGCGCAATCC TGCCGGAACG CCGTATGGAA GGGAGCGCAT GGTCACGGTT
TTGCGCCAAA ACCGGAACTC CTCGGCCCAA AATATGGCCG CGGCTCTTCA TGAATCCTTG
CGCACTTTTG CCAAAACTGA CGCGTTCGAG GACGATGTTT CCCTGTTGTG CGTCAAATCC
CTGCCGACAG CAGCACATGA AGATAATTGA
 
Protein sequence
MPHCHTSGSS SQASTLQAIL ETAVDGIVVI TPQGTIQAVN KAISTIFGYS REWLLGQPVS 
VLMPEPYRST HQSFIQRYLQ TGEGHILGVG GREVPGRTSD GSIIPLELGV SEITSGDDHL
FAAILRDITE RKASQQALME SYLELENKQK LLDKDLEAAA NIQLSLLPSN FSPLPGLDVG
WVFDPSLEIG GDIFNLVPLQ TGHLGMYILD VSGHGVPAAL VAVSAAQAMY RHTLVRSESW
PGREGPPTPP ATVLEQLDAE FPLERFDTYF TMSYVVMDLE SATLHYSNAG HPAPLLIRNS
GEVVSLETEG TLIGLGGLRP FTTEQDTLHP GDVLVLYTDG IYEQRNPAGT PYGRERMVTV
LRQNRNSSAQ NMAAALHESL RTFAKTDAFE DDVSLLCVKS LPTAAHEDN