Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_1524 |
Symbol | |
ID | 8419353 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 1767581 |
End bp | 1768810 |
Gene Length | 1230 bp |
Protein Length | 409 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 645038098 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_003198388 |
Protein GI | 258405646 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTCATT GCCACACTTC GGGCTCATCC TCGCAAGCGA GTACCCTCCA GGCCATCCTG GAAACCGCTG TTGACGGCAT TGTCGTCATT ACCCCCCAGG GGACCATCCA GGCGGTCAAC AAGGCCATCA GCACCATTTT TGGGTATTCC CGAGAATGGC TCCTCGGCCA GCCGGTGTCT GTGCTTATGC CCGAGCCCTA CCGGAGCACA CATCAATCGT TTATCCAGAG GTACCTGCAA ACAGGCGAAG GCCATATTTT GGGGGTTGGA GGCCGCGAGG TGCCCGGGCG CACATCCGAC GGCTCCATTA TCCCCCTTGA GTTGGGGGTC AGCGAAATCA CTTCTGGAGA CGACCATCTC TTTGCGGCAA TTTTACGGGA TATAACTGAA CGCAAAGCGA GCCAACAGGC CCTCATGGAA AGCTACCTGG AGTTGGAAAA TAAACAAAAA TTGCTGGACA AAGATCTGGA GGCGGCGGCC AATATTCAAC TCAGTCTTTT ACCGTCCAAT TTTTCCCCTC TCCCGGGGCT CGACGTGGGG TGGGTCTTTG ATCCCAGTCT TGAAATCGGC GGAGACATTT TCAACCTCGT TCCCTTGCAA ACGGGGCATT TGGGGATGTA CATCCTGGAC GTCAGCGGCC ACGGGGTCCC TGCGGCTTTG GTAGCCGTTT CCGCGGCCCA GGCCATGTAC CGGCACACCC TGGTGCGCAG CGAATCTTGG CCGGGACGGG AAGGGCCCCC AACTCCTCCG GCAACAGTGC TGGAACAGCT GGACGCCGAG TTTCCCTTGG AACGCTTCGA CACCTATTTT ACCATGTCCT ATGTGGTAAT GGACCTCGAA AGTGCAACGT TGCACTATTC CAACGCCGGG CATCCGGCTC CGCTCTTGAT CCGCAATTCA GGGGAGGTGG TCTCGCTGGA GACCGAAGGA ACGCTCATCG GGCTCGGGGG GCTCCGTCCT TTTACCACCG AACAGGACAC GTTGCACCCT GGTGATGTCT TGGTCCTGTA TACCGACGGG ATCTACGAGC AGCGCAATCC TGCCGGAACG CCGTATGGAA GGGAGCGCAT GGTCACGGTT TTGCGCCAAA ACCGGAACTC CTCGGCCCAA AATATGGCCG CGGCTCTTCA TGAATCCTTG CGCACTTTTG CCAAAACTGA CGCGTTCGAG GACGATGTTT CCCTGTTGTG CGTCAAATCC CTGCCGACAG CAGCACATGA AGATAATTGA
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Protein sequence | MPHCHTSGSS SQASTLQAIL ETAVDGIVVI TPQGTIQAVN KAISTIFGYS REWLLGQPVS VLMPEPYRST HQSFIQRYLQ TGEGHILGVG GREVPGRTSD GSIIPLELGV SEITSGDDHL FAAILRDITE RKASQQALME SYLELENKQK LLDKDLEAAA NIQLSLLPSN FSPLPGLDVG WVFDPSLEIG GDIFNLVPLQ TGHLGMYILD VSGHGVPAAL VAVSAAQAMY RHTLVRSESW PGREGPPTPP ATVLEQLDAE FPLERFDTYF TMSYVVMDLE SATLHYSNAG HPAPLLIRNS GEVVSLETEG TLIGLGGLRP FTTEQDTLHP GDVLVLYTDG IYEQRNPAGT PYGRERMVTV LRQNRNSSAQ NMAAALHESL RTFAKTDAFE DDVSLLCVKS LPTAAHEDN
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