Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_1504 |
Symbol | |
ID | 5192623 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 1689772 |
End bp | 1691463 |
Gene Length | 1692 bp |
Protein Length | 563 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640585974 |
Product | response regulator receiver protein |
Protein accession | YP_001266845 |
Protein GI | 148546743 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.709749 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.106415 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGGCCG AACAGGCGTT GACCGTGCTG GTCGCCGAAG ACAGTGCTGT CGATCGCCTT CTGCTTGCGC AGATCGTGCG CCGCCAGGGG CATCAGGTAT TCACTGCGGA GAACGGCGAG CAGGCGGTAG CGCTGTACCT CGAGCGGCGC CCGCAACTGG TGCTGCTGGA CGCCTTGATG CCGGTCATGG ATGGCTTCGA GGCGGCGCGG CAGATCAAGG CATTGGCTGG CGAGGCGCTG GTGCCGATCA TTTTCCTGAC GTCGCTGAAT GAAGAAGAAG GCCTGGTGCG TTGCCTGGAG GCGGGGGGCG ATGATTTCAT GGCCAAGCCC TACAGTGCGG TGATCCTCGC TGCCAAGATT CGCGCCATGG ACCGTCTGCG TCGCTTGCAG GCAACGGTAC TGGAACAGCG TGACCAGATC ACCCGGCATC ACCATCACCT GCTTAACGAG CAGCGGGTCG CCAAGGCGGT GTTCGACAAG GTGGCCCACT CGGGTTGCCT TTCTGCACCC AACATTCGCT ACCTGCAATC GCCTTACGCG CTGTTCAATG GCGACCTGAT GCTGGCGGCA TTTACCCCGG CCGGCGACAT GCGTGTGCTG CTTGGCGATT TCACCGGTCA CGGCCTGCCG GCGGCGGTCG GCGCCATGCC GATGGCTGAG GTGTTCTACG GCATGACCGC CAAGGGCTAC GGCATGGCGC AGATCCTGCG CGAGATGAAT GCCAAGCTCA AGCGCATCCT GCCGGTGGAC ATGTTCTGCT GTGCGCTGCT GCTCAACCTC AGCATGCAGC GCGGCTCGGT GGAGGTATGG AATGGCGGTA TGCCTGATGG CTATCGCCTG TCGGTGGATG GCCAAGTGCT GTCGGCACTG AGTTCGCGGC ACCTGCCGCT GGGCATTCTG GCCGCTGAGC GCTTCGATGA CAGCACAGAG GTGTTGCCGC TGGCACCGGG CGAGCGCCTG TTGCTGCTGT CAGACGGTGT GCTCGATACC GCCGACGACC AGGAGCGCCT GTTTGGCGTA CAGCGCCTGC GAGCGGTGCT GGCCGACAAC CGCGACCCTG TGCAGTTGTT CGATGAGCTG ATGCTGGCCC TGGAGCGTTT TGGTGGGCAG CCACGCGATG ACATCAGCTT GTGCGACATT CGCATGTTCA CTGCCGAGGA GCGGGTGCCG GCACCGATGA TCTACTCTGA TAGTGGCCGC TCCAGCCCGC TGGACTGGTC GCTGAGCTTC GAAGTGCGGG GCGAAAGCCT TAAGCGCTTC AACCCTGTGC CTTACCTGGT GCAGTTGTTG CAGGAAATTC ATGGCCTGCG CGCACGTACC GGCAACTTGC ACAGTGTGCT TAGTGAGTTG TATGCCAATG CGCTGGAGCA TGGTGTGCTG GGCCTGGACT CACAGCTCAA GCGCGATGTG CAAGGCTTTA CCGACTATTA CCAGGAGCGC GCCCGGCGCC TGGGCTCGCT GACCGAAGGC TTTGTAAGCA TCGATTTCAA GGTTGAACCG CATGGCGGCG GTGGGCGTCT GACGATCGAG GTGCGCGACA GCGGTGCCGG CTTCGACGTG CAGCGCGTGC TTGCGCGGCC TTCGCTGGAT CAGGGGCTGA GCGGTCGCGG TCTGAATCTG GTGCGGCAGT TGGCCAGTGA CGCGCGCTGG AGTGAGGGCG GGCGTTGCGC GCATGTGGAG TTCGTATGGT GA
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Protein sequence | MPAEQALTVL VAEDSAVDRL LLAQIVRRQG HQVFTAENGE QAVALYLERR PQLVLLDALM PVMDGFEAAR QIKALAGEAL VPIIFLTSLN EEEGLVRCLE AGGDDFMAKP YSAVILAAKI RAMDRLRRLQ ATVLEQRDQI TRHHHHLLNE QRVAKAVFDK VAHSGCLSAP NIRYLQSPYA LFNGDLMLAA FTPAGDMRVL LGDFTGHGLP AAVGAMPMAE VFYGMTAKGY GMAQILREMN AKLKRILPVD MFCCALLLNL SMQRGSVEVW NGGMPDGYRL SVDGQVLSAL SSRHLPLGIL AAERFDDSTE VLPLAPGERL LLLSDGVLDT ADDQERLFGV QRLRAVLADN RDPVQLFDEL MLALERFGGQ PRDDISLCDI RMFTAEERVP APMIYSDSGR SSPLDWSLSF EVRGESLKRF NPVPYLVQLL QEIHGLRART GNLHSVLSEL YANALEHGVL GLDSQLKRDV QGFTDYYQER ARRLGSLTEG FVSIDFKVEP HGGGGRLTIE VRDSGAGFDV QRVLARPSLD QGLSGRGLNL VRQLASDARW SEGGRCAHVE FVW
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