More than 300 homologs were found in PanDaTox collection
for query gene Cpin_3275 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_3275  transcriptional regulator, Crp/Fnr family  100 
 
 
195 aa  397  9.999999999999999e-111  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0513046  hitchhiker  0.00943034 
 
 
-
 
NC_009441  Fjoh_1583  CRP/FNR family transcriptional regulator  47.78 
 
 
198 aa  192  2e-48  Flavobacterium johnsoniae UW101  Bacteria  normal  0.547464  n/a   
 
 
-
 
NC_009441  Fjoh_4053  CRP/FNR family transcriptional regulator  40.41 
 
 
211 aa  138  4.999999999999999e-32  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_1849  cyclic nucleotide-binding  41.52 
 
 
195 aa  129  2.0000000000000002e-29  Pedobacter heparinus DSM 2366  Bacteria  hitchhiker  0.00134256  normal  0.103049 
 
 
-
 
NC_013037  Dfer_0691  transcriptional regulator, Crp/Fnr family  35.14 
 
 
214 aa  116  1.9999999999999998e-25  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.275069  normal 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  31.15 
 
 
225 aa  90.5  1e-17  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  30.6 
 
 
228 aa  88.6  6e-17  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  29.63 
 
 
231 aa  87.8  1e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  30 
 
 
249 aa  86.7  2e-16  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  27.32 
 
 
248 aa  82.8  0.000000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_012918  GM21_3198  transcriptional regulator, Crp/Fnr family  29.21 
 
 
221 aa  81.3  0.000000000000007  Geobacter sp. M21  Bacteria  n/a    normal  0.90573 
 
 
-
 
NC_011146  Gbem_1063  transcriptional regulator, Crp/Fnr family  29.21 
 
 
238 aa  81.6  0.000000000000007  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1992  Crp/FNR family transcriptional regulator  29.1 
 
 
226 aa  80.9  0.00000000000001  Geobacter sulfurreducens PCA  Bacteria  normal  0.103472  n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  26.37 
 
 
228 aa  80.5  0.00000000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_010086  Bmul_5297  Crp/FNR family transcriptional regulator  28.49 
 
 
248 aa  78.2  0.00000000000006  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009504  BOV_A0257  transcriptional regulator NnrR  24.73 
 
 
232 aa  77.8  0.00000000000009  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  30.56 
 
 
227 aa  77.4  0.0000000000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_009483  Gura_2323  CRP/FNR family transcriptional regulator  30.11 
 
 
233 aa  77.4  0.0000000000001  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00053006  n/a   
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  27.13 
 
 
248 aa  77  0.0000000000001  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  28.65 
 
 
227 aa  77.4  0.0000000000001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  30.95 
 
 
227 aa  77  0.0000000000001  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_3149  Crp/FNR family transcriptional regulator  27.66 
 
 
249 aa  77.8  0.0000000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A0051  cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases  25.27 
 
 
251 aa  76.3  0.0000000000002  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  27.66 
 
 
229 aa  76.6  0.0000000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  28.41 
 
 
226 aa  76.6  0.0000000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  27.78 
 
 
227 aa  76.6  0.0000000000002  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1540  Crp/FNR family transcriptional regulator  25.68 
 
 
630 aa  76.6  0.0000000000002  Burkholderia pseudomallei 1710b  Bacteria  normal  0.18142  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0037  Crp/FNR family transcriptional regulator  25.27 
 
 
251 aa  76.3  0.0000000000002  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_5122  Crp/FNR family transcriptional regulator  26.6 
 
 
248 aa  76.6  0.0000000000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5737  Crp/FNR family transcriptional regulator  26.6 
 
 
248 aa  76.6  0.0000000000002  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.188641 
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  28.25 
 
 
238 aa  77  0.0000000000002  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
NC_006349  BMAA0031  Crp/FNR family transcriptional regulator  25.27 
 
 
251 aa  76.3  0.0000000000003  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1184  Crp/FNR family transcriptional regulator  25.27 
 
 
251 aa  76.3  0.0000000000003  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0035  Crp/FNR family transcriptional regulator  24.6 
 
 
251 aa  76.3  0.0000000000003  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0037  Crp/FNR family transcriptional regulator  25.27 
 
 
251 aa  76.3  0.0000000000003  Burkholderia mallei NCTC 10247  Bacteria  normal  0.284481  n/a   
 
 
-
 
NC_008835  BMA10229_1464  Crp/FNR family transcriptional regulator  25.27 
 
 
251 aa  76.3  0.0000000000003  Burkholderia mallei NCTC 10229  Bacteria  normal  0.855917  n/a   
 
 
-
 
NC_004311  BRA0281  transcriptional regulator NnrR  24.19 
 
 
232 aa  75.9  0.0000000000004  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  25.27 
 
 
229 aa  75.9  0.0000000000004  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_008391  Bamb_5008  Crp/FNR family transcriptional regulator  27.13 
 
 
249 aa  75.9  0.0000000000004  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  23.84 
 
 
243 aa  75.5  0.0000000000005  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_010515  Bcenmc03_4486  Crp/FNR family transcriptional regulator  26.6 
 
 
248 aa  75.1  0.0000000000006  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  29.7 
 
 
224 aa  73.9  0.000000000001  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  30.48 
 
 
243 aa  73.6  0.000000000002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  30.98 
 
 
236 aa  73.6  0.000000000002  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_010524  Lcho_0755  Crp/FNR family transcriptional regulator  25.65 
 
 
222 aa  73.2  0.000000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.2571 
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  25.52 
 
 
236 aa  73.2  0.000000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_007498  Pcar_2562  cyclic AMP receptor protein  28.8 
 
 
222 aa  72.8  0.000000000003  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.553837  n/a   
 
 
-
 
NC_014151  Cfla_0719  transcriptional regulator, Crp/Fnr family  27.42 
 
 
257 aa  72.8  0.000000000003  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000204419 
 
 
-
 
NC_008254  Meso_2246  Crp/FNR family transcriptional regulator  28.49 
 
 
233 aa  72.4  0.000000000003  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_1356  transcriptional regulator, Crp/Fnr family  29.57 
 
 
222 aa  72.4  0.000000000004  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A1119  catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein)  25.27 
 
 
222 aa  72.4  0.000000000004  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.106899 
 
 
-
 
NC_011761  AFE_1658  transcriptional regulator, Crp/Fnr family  29.57 
 
 
222 aa  72.4  0.000000000004  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.365354  n/a   
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  26.56 
 
 
229 aa  71.6  0.000000000007  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_007404  Tbd_0079  Crp/FNR family transcriptional regulator  25.27 
 
 
225 aa  71.2  0.000000000009  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.849443  normal  0.162256 
 
 
-
 
NC_013132  Cpin_4234  transcriptional regulator, Crp/Fnr family  27.89 
 
 
248 aa  71.2  0.00000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4550  cyclic nucleotide-binding domain-containing protein  27.57 
 
 
238 aa  70.9  0.00000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  25 
 
 
241 aa  69.7  0.00000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  29.82 
 
 
225 aa  70.1  0.00000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  23.46 
 
 
223 aa  70.1  0.00000000002  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  30.18 
 
 
236 aa  70.1  0.00000000002  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  28.96 
 
 
226 aa  70.1  0.00000000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  27.12 
 
 
236 aa  69.3  0.00000000004  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  24.73 
 
 
231 aa  68.9  0.00000000004  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  24.73 
 
 
231 aa  68.9  0.00000000004  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  26.26 
 
 
226 aa  68.9  0.00000000004  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  25.93 
 
 
231 aa  68.6  0.00000000005  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  26.7 
 
 
251 aa  68.6  0.00000000005  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  25.52 
 
 
230 aa  68.6  0.00000000006  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  25.81 
 
 
227 aa  68.6  0.00000000006  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_011666  Msil_1523  transcriptional regulator, Crp/Fnr family  27.6 
 
 
231 aa  68.6  0.00000000006  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  27.91 
 
 
225 aa  68.2  0.00000000007  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  27.37 
 
 
254 aa  68.2  0.00000000007  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  25.7 
 
 
229 aa  68.2  0.00000000007  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  28.02 
 
 
226 aa  68.2  0.00000000008  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  30.77 
 
 
236 aa  68.2  0.00000000008  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_013037  Dfer_5316  transcriptional regulator, Crp/Fnr family  28.18 
 
 
354 aa  67.4  0.0000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.100222 
 
 
-
 
NC_008699  Noca_1660  Crp/FNR family transcriptional regulator  25.52 
 
 
261 aa  67.8  0.0000000001  Nocardioides sp. JS614  Bacteria  normal  0.74426  n/a   
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  25.45 
 
 
228 aa  67.8  0.0000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0388  cAMP-regulatory protein  29.67 
 
 
212 aa  67.8  0.0000000001  Psychromonas ingrahamii 37  Bacteria  normal  0.0189183  normal 
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  27.57 
 
 
234 aa  67.4  0.0000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_013216  Dtox_2750  transcriptional regulator, Crp/Fnr family  26.4 
 
 
222 aa  67.4  0.0000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.0000000354449  normal  0.602467 
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  24.19 
 
 
231 aa  67.8  0.0000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  30.18 
 
 
236 aa  67  0.0000000002  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  25.67 
 
 
232 aa  66.6  0.0000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_46100  cAMP-regulatory protein  27.23 
 
 
215 aa  65.9  0.0000000003  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_3800  Crp/FNR family transcriptional regulator  24.29 
 
 
225 aa  66.2  0.0000000003  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008242  Meso_4277  Crp/FNR family transcriptional regulator  27.53 
 
 
234 aa  66.2  0.0000000003  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3943  cAMP-regulatory protein  27.96 
 
 
214 aa  65.5  0.0000000004  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  28.83 
 
 
228 aa  65.9  0.0000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  28.74 
 
 
247 aa  65.5  0.0000000005  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  27.27 
 
 
225 aa  65.5  0.0000000005  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_012039  Cla_0689  conserved hypothetical protein, putative transcriptional regulator  29.63 
 
 
200 aa  65.1  0.0000000006  Campylobacter lari RM2100  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1785  transcriptional regulator, Crp/Fnr family  25.42 
 
 
225 aa  65.1  0.0000000006  Ralstonia pickettii 12D  Bacteria  normal  0.0232074  normal  0.813169 
 
 
-
 
NC_009715  CCV52592_0436  transcription regulator  25.97 
 
 
214 aa  65.1  0.0000000007  Campylobacter curvus 525.92  Bacteria  normal  0.0316636  n/a   
 
 
-
 
NC_008686  Pden_2478  CRP/FNR family transcriptional regulator  34.65 
 
 
249 aa  65.1  0.0000000007  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.651433 
 
 
-
 
NC_008309  HS_0139  cAMP-regulatory protein  28.57 
 
 
214 aa  64.7  0.0000000009  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3550  cAMP-regulatory protein  26.23 
 
 
217 aa  63.9  0.000000001  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_1473  putative transcriptional regulator  26.2 
 
 
198 aa  64.3  0.000000001  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  0.0168255  n/a   
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  22.6 
 
 
224 aa  63.9  0.000000001  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
NC_002950  PG0396  Crp/FNR family transcriptional regulator  25.14 
 
 
232 aa  63.5  0.000000002  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
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