More than 300 homologs were found in PanDaTox collection
for query gene Bphyt_6678 on replicon NC_010676
Organism: Burkholderia phytofirmans PsJN



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010676  Bphyt_6678  two component transcriptional regulator, LuxR family  100 
 
 
207 aa  409  1e-113  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_3389  response regulator receiver protein  49.75 
 
 
211 aa  174  9.999999999999999e-43  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_5540  response regulator receiver protein  45.83 
 
 
226 aa  156  2e-37  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0494649 
 
 
-
 
NC_010622  Bphy_0645  two component LuxR family transcriptional regulator  43.56 
 
 
240 aa  151  5.9999999999999996e-36  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5152  two component transcriptional regulator, LuxR family  45.08 
 
 
207 aa  149  2e-35  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.341934  normal  0.483556 
 
 
-
 
NC_011071  Smal_2139  two component transcriptional regulator, LuxR family  42.86 
 
 
213 aa  147  1.0000000000000001e-34  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2249  two component LuxR family transcriptional regulator  43.75 
 
 
204 aa  147  1.0000000000000001e-34  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6902  two component transcriptional regulator, LuxR family  44.62 
 
 
210 aa  146  2.0000000000000003e-34  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.173656  normal  0.571333 
 
 
-
 
NC_008554  Sfum_0582  two component LuxR family transcriptional regulator  43.65 
 
 
206 aa  146  2.0000000000000003e-34  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.812865 
 
 
-
 
NC_003295  RSc1597  response regulator transcription regulator protein  45.18 
 
 
210 aa  145  4.0000000000000006e-34  Ralstonia solanacearum GMI1000  Bacteria  normal  0.395881  normal 
 
 
-
 
NC_008825  Mpe_A0811  two-component response regulator  43.37 
 
 
209 aa  144  7.0000000000000006e-34  Methylibium petroleiphilum PM1  Bacteria  normal  0.184612  normal 
 
 
-
 
NC_009719  Plav_2358  response regulator receiver protein  42.27 
 
 
233 aa  144  8.000000000000001e-34  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.119902  normal  0.5156 
 
 
-
 
NC_007964  Nham_0872  two component LuxR family transcriptional regulator  42.78 
 
 
210 aa  144  8.000000000000001e-34  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4618  two component LuxR family transcriptional regulator  42.64 
 
 
224 aa  144  9e-34  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_007484  Noc_1701  two component LuxR family transcriptional regulator  42.86 
 
 
201 aa  144  1e-33  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0166117  n/a   
 
 
-
 
NC_012856  Rpic12D_1621  two component transcriptional regulator, LuxR family  45.18 
 
 
211 aa  143  2e-33  Ralstonia pickettii 12D  Bacteria  normal  0.171805  normal 
 
 
-
 
NC_011992  Dtpsy_3511  two component transcriptional regulator, LuxR family  42.35 
 
 
209 aa  143  2e-33  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_1949  two component transcriptional regulator, LuxR family  45.23 
 
 
211 aa  142  3e-33  Ralstonia pickettii 12J  Bacteria  normal  0.24135  normal  0.0521212 
 
 
-
 
NC_009485  BBta_7459  nodulation protein W, two-component transcriptional regulator  39.11 
 
 
219 aa  142  3e-33  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_012853  Rleg_5743  two component transcriptional regulator, LuxR family  42.08 
 
 
212 aa  142  4e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5502  two component response regulator  41.21 
 
 
212 aa  142  4e-33  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_1194  two component LuxR family transcriptional regulator  42.64 
 
 
210 aa  142  4e-33  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00813352  normal  0.892025 
 
 
-
 
NC_009512  Pput_2871  response regulator receiver protein  42.5 
 
 
206 aa  141  5e-33  Pseudomonas putida F1  Bacteria  normal  0.313361  normal  0.346414 
 
 
-
 
NC_004578  PSPTO_5548  DNA-binding response regulator, LuxR family  43.37 
 
 
212 aa  140  9.999999999999999e-33  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_5088  LuxR response regulator receiver  44 
 
 
212 aa  140  9.999999999999999e-33  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_5693  two component LuxR family transcriptional regulator  41.33 
 
 
224 aa  140  9.999999999999999e-33  Burkholderia phymatum STM815  Bacteria  normal  normal  0.247452 
 
 
-
 
NC_008009  Acid345_3729  two component LuxR family transcriptional regulator  42.49 
 
 
209 aa  140  9.999999999999999e-33  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2356  response regulator receiver protein  43.81 
 
 
215 aa  140  1.9999999999999998e-32  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.504321 
 
 
-
 
NC_007492  Pfl01_2459  two component LuxR family transcriptional regulator  44 
 
 
215 aa  140  1.9999999999999998e-32  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1301  LuxR response regulator receiver  41.62 
 
 
210 aa  139  3e-32  Ralstonia eutropha JMP134  Bacteria  normal  0.549132  n/a   
 
 
-
 
NC_011004  Rpal_1519  two component transcriptional regulator, LuxR family  41.87 
 
 
228 aa  139  3.9999999999999997e-32  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.444774  n/a   
 
 
-
 
NC_009379  Pnuc_0732  response regulator receiver protein  42.5 
 
 
215 aa  139  3.9999999999999997e-32  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.298469  n/a   
 
 
-
 
NC_011662  Tmz1t_3866  two component transcriptional regulator, LuxR family  43.98 
 
 
224 aa  138  6e-32  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_5187  two component transcriptional regulator, LuxR family  42.02 
 
 
230 aa  137  7.999999999999999e-32  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.209149 
 
 
-
 
NC_010515  Bcenmc03_3910  two component LuxR family transcriptional regulator  41.36 
 
 
210 aa  137  1e-31  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.855973 
 
 
-
 
NC_007651  BTH_I1862  LuxR family DNA-binding response regulator  40.98 
 
 
212 aa  137  1e-31  Burkholderia thailandensis E264  Bacteria  normal  0.340696  n/a   
 
 
-
 
NC_010681  Bphyt_2407  two component transcriptional regulator, LuxR family  43.41 
 
 
220 aa  137  1e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.958584 
 
 
-
 
NC_008543  Bcen2424_3610  two component LuxR family transcriptional regulator  41.36 
 
 
210 aa  137  1e-31  Burkholderia cenocepacia HI2424  Bacteria  normal  0.603365  normal 
 
 
-
 
NC_010505  Mrad2831_1268  two component LuxR family transcriptional regulator  41.24 
 
 
220 aa  136  2e-31  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5456  two component transcriptional regulator, LuxR family  42.02 
 
 
230 aa  136  2e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.154935  hitchhiker  0.00976207 
 
 
-
 
NC_007511  Bcep18194_B2505  two component LuxR family transcriptional regulator  41.36 
 
 
210 aa  137  2e-31  Burkholderia sp. 383  Bacteria  normal  0.382458  normal  0.897172 
 
 
-
 
NC_012858  Rleg_6853  two component transcriptional regulator, LuxR family  41.88 
 
 
223 aa  136  2e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0943  two component LuxR family transcriptional regulator  41.75 
 
 
214 aa  137  2e-31  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009080  BMA10247_1505  LuxR family DNA-binding response regulator  40.49 
 
 
212 aa  136  3.0000000000000003e-31  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA1723  LuxR family DNA-binding response regulator  40.49 
 
 
212 aa  136  3.0000000000000003e-31  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0901353  n/a   
 
 
-
 
NC_009507  Swit_5293  two component LuxR family transcriptional regulator  37.5 
 
 
203 aa  136  3.0000000000000003e-31  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_007434  BURPS1710b_2748  LuxR family DNA-binding response regulator  40.49 
 
 
212 aa  136  3.0000000000000003e-31  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_2614  LuxR family DNA-binding response regulator  40.49 
 
 
212 aa  136  3.0000000000000003e-31  Burkholderia pseudomallei 668  Bacteria  normal  0.37823  n/a   
 
 
-
 
NC_008836  BMA10229_A3087  LuxR family DNA-binding response regulator  40.49 
 
 
212 aa  136  3.0000000000000003e-31  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2232  LuxR family DNA-binding response regulator  40.49 
 
 
212 aa  136  3.0000000000000003e-31  Burkholderia mallei SAVP1  Bacteria  normal  0.97455  n/a   
 
 
-
 
NC_009076  BURPS1106A_2670  LuxR family DNA-binding response regulator  40.49 
 
 
212 aa  136  3.0000000000000003e-31  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_5346  two component LuxR family transcriptional regulator  41.36 
 
 
210 aa  135  3.0000000000000003e-31  Burkholderia ambifaria AMMD  Bacteria  normal  0.0593225  normal  0.752943 
 
 
-
 
NC_008542  Bcen2424_2139  two component LuxR family transcriptional regulator  40.98 
 
 
212 aa  135  4e-31  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_1131  two component LuxR family transcriptional regulator  40.98 
 
 
212 aa  135  4e-31  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0589444  normal  0.612677 
 
 
-
 
NC_007510  Bcep18194_A5445  two component LuxR family transcriptional regulator  40.98 
 
 
212 aa  135  4e-31  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_2049  two component LuxR family transcriptional regulator  40.98 
 
 
212 aa  135  4e-31  Burkholderia ambifaria MC40-6  Bacteria  normal  0.435361  normal 
 
 
-
 
NC_010508  Bcenmc03_2157  two component LuxR family transcriptional regulator  40.98 
 
 
212 aa  135  4e-31  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_2176  two component LuxR family transcriptional regulator  40.98 
 
 
212 aa  135  4e-31  Burkholderia ambifaria AMMD  Bacteria  normal  0.116055  n/a   
 
 
-
 
NC_010552  BamMC406_3516  two component LuxR family transcriptional regulator  40.84 
 
 
210 aa  135  5e-31  Burkholderia ambifaria MC40-6  Bacteria  normal  0.584359  normal  0.0331166 
 
 
-
 
NC_012848  Rleg_5189  two component transcriptional regulator, LuxR family  45.41 
 
 
213 aa  135  5e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.814448  normal  0.223105 
 
 
-
 
NC_008062  Bcen_5938  two component LuxR family transcriptional regulator  40.49 
 
 
212 aa  134  7.000000000000001e-31  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.172889  n/a   
 
 
-
 
NC_007484  Noc_2445  two component LuxR family transcriptional regulator  38.66 
 
 
208 aa  134  9.999999999999999e-31  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5186  two component LuxR family transcriptional regulator  41.87 
 
 
214 aa  134  9.999999999999999e-31  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.0233056 
 
 
-
 
NC_011004  Rpal_3839  two component transcriptional regulator, LuxR family  40.87 
 
 
210 aa  134  9.999999999999999e-31  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.287356  n/a   
 
 
-
 
NC_008061  Bcen_3181  two component LuxR family transcriptional regulator  41.87 
 
 
214 aa  134  9.999999999999999e-31  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.246114  n/a   
 
 
-
 
NC_010515  Bcenmc03_5090  two component LuxR family transcriptional regulator  41.87 
 
 
214 aa  134  9.999999999999999e-31  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.159727  normal 
 
 
-
 
NC_007951  Bxe_A1539  two component LuxR family transcriptional regulator  41.46 
 
 
214 aa  132  1.9999999999999998e-30  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.274992 
 
 
-
 
NC_010681  Bphyt_2593  two component transcriptional regulator, LuxR family  41.46 
 
 
214 aa  132  3e-30  Burkholderia phytofirmans PsJN  Bacteria  normal  0.382122  hitchhiker  0.00235574 
 
 
-
 
NC_009511  Swit_0268  two component LuxR family transcriptional regulator  40.64 
 
 
203 aa  132  3e-30  Sphingomonas wittichii RW1  Bacteria  normal  0.0126561  normal  0.200699 
 
 
-
 
NC_009621  Smed_5633  response regulator receiver protein  42.56 
 
 
218 aa  132  3.9999999999999996e-30  Sinorhizobium medicae WSM419  Bacteria  normal  0.938686  normal  0.508699 
 
 
-
 
NC_010622  Bphy_1472  two component LuxR family transcriptional regulator  41.46 
 
 
214 aa  132  3.9999999999999996e-30  Burkholderia phymatum STM815  Bacteria  normal  normal  0.781461 
 
 
-
 
NC_010681  Bphyt_2166  two component transcriptional regulator, LuxR family  39.15 
 
 
220 aa  131  6e-30  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_5185  two component LuxR family transcriptional regulator  44.1 
 
 
213 aa  131  6.999999999999999e-30  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_1578  two component LuxR family transcriptional regulator  39.06 
 
 
207 aa  131  7.999999999999999e-30  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.661779  n/a   
 
 
-
 
NC_007298  Daro_3812  two component LuxR family transcriptional regulator  39.27 
 
 
208 aa  131  9e-30  Dechloromonas aromatica RCB  Bacteria  normal  0.922787  normal  0.026414 
 
 
-
 
NC_007974  Rmet_5318  two component LuxR family transcriptional regulator  45.05 
 
 
247 aa  130  1.0000000000000001e-29  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00034283  normal  0.590249 
 
 
-
 
NC_008825  Mpe_A2130  two component LuxR family transcriptional regulator  40.62 
 
 
207 aa  130  2.0000000000000002e-29  Methylibium petroleiphilum PM1  Bacteria  normal  0.281977  normal 
 
 
-
 
NC_010531  Pnec_0704  two component transcriptional regulator, LuxR family  40.5 
 
 
214 aa  130  2.0000000000000002e-29  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  0.753304  normal  0.399327 
 
 
-
 
NC_011666  Msil_1825  two component transcriptional regulator, LuxR family  40 
 
 
205 aa  129  2.0000000000000002e-29  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0736095 
 
 
-
 
NC_011662  Tmz1t_1465  two component transcriptional regulator, LuxR family  42.35 
 
 
247 aa  130  2.0000000000000002e-29  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3275  response regulator FixJ  41.36 
 
 
205 aa  129  2.0000000000000002e-29  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1685  two component transcriptional regulator, LuxR family  41.97 
 
 
215 aa  130  2.0000000000000002e-29  Burkholderia phytofirmans PsJN  Bacteria  normal  0.166103  normal  0.907447 
 
 
-
 
NC_010717  PXO_00709  nodulation protein  39.9 
 
 
200 aa  129  2.0000000000000002e-29  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  hitchhiker  0.00695869  n/a   
 
 
-
 
NC_009511  Swit_2977  response regulator receiver protein  41.67 
 
 
208 aa  129  2.0000000000000002e-29  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.286368 
 
 
-
 
NC_009092  Shew_3240  two component LuxR family transcriptional regulator  38.89 
 
 
207 aa  129  4.0000000000000003e-29  Shewanella loihica PV-4  Bacteria  normal  normal  0.989265 
 
 
-
 
NC_008740  Maqu_2095  response regulator receiver protein  37.24 
 
 
216 aa  129  4.0000000000000003e-29  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2380  response regulator receiver protein  40.58 
 
 
208 aa  128  5.0000000000000004e-29  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2400  two component transcriptional regulator, LuxR family  40.51 
 
 
210 aa  128  7.000000000000001e-29  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4727  response regulator FixJ  40.1 
 
 
203 aa  127  8.000000000000001e-29  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0317  LuxR family DNA-binding response regulator  40.31 
 
 
250 aa  127  9.000000000000001e-29  Burkholderia thailandensis E264  Bacteria  normal  0.0309445  n/a   
 
 
-
 
NC_010557  BamMC406_6495  two component LuxR family transcriptional regulator  41.54 
 
 
214 aa  127  9.000000000000001e-29  Burkholderia ambifaria MC40-6  Bacteria  normal  0.653682  normal 
 
 
-
 
NC_008392  Bamb_5742  two component LuxR family transcriptional regulator  41.54 
 
 
219 aa  127  9.000000000000001e-29  Burkholderia ambifaria AMMD  Bacteria  normal  0.505537  normal  0.963827 
 
 
-
 
NC_008752  Aave_2460  two component LuxR family transcriptional regulator  40.1 
 
 
208 aa  127  1.0000000000000001e-28  Acidovorax citrulli AAC00-1  Bacteria  normal  0.293905  normal 
 
 
-
 
NC_007298  Daro_3108  LuxR response regulator receiver  39 
 
 
202 aa  127  1.0000000000000001e-28  Dechloromonas aromatica RCB  Bacteria  normal  0.786061  normal 
 
 
-
 
NC_012792  Vapar_6169  two component transcriptional regulator, LuxR family  41.03 
 
 
221 aa  127  1.0000000000000001e-28  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1553  two component LuxR family transcriptional regulator  40 
 
 
212 aa  127  1.0000000000000001e-28  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0042  LuxR family DNA-binding response regulator  39.06 
 
 
212 aa  126  2.0000000000000002e-28  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0038  LuxR family DNA-binding response regulator  39.06 
 
 
212 aa  126  2.0000000000000002e-28  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_0630  response regulator FixJ  41.12 
 
 
204 aa  127  2.0000000000000002e-28  Caulobacter sp. K31  Bacteria  normal  0.136769  normal  0.239148 
 
 
-
 
NC_008782  Ajs_2127  two component LuxR family transcriptional regulator  39.58 
 
 
208 aa  126  2.0000000000000002e-28  Acidovorax sp. JS42  Bacteria  normal  0.583598  normal  0.797665 
 
 
-
 
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