Gene Rpic12D_1621 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_1621 
Symbol 
ID8019271 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp1724647 
End bp1725282 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content62% 
IMG OID644830401 
Producttwo component transcriptional regulator, LuxR family 
Protein accessionYP_002981577 
Protein GI241663217 
COG category[T] Signal transduction mechanisms 
COG ID[COG4566] Response regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.171805 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACAA CGCCCGCCGC AGTTGCGCCG CGCAACGAAA CCGTGTTCGT CGTCGACGAC 
GATGAAGCCA TGCGTGACTC GTTGACATGG CTGCTCGAAG GCAACGGCTA CACCGTCCGC
ACCTACCGCA GCGCCGAAGA ATTCCTGGTC GACGACAAGC GCGGCGAAGG TGTCGGCTGC
CTGATCCTCG ACGTGCGCAT GCAAGGCATG AGCGGCCCCG AGCTGCAAGA TCGCCTGTTG
GCAGAGAACA ACCGCATGCC GATCGTCTTC GTCACGGGCC ACGGCGACGT GCCGTTGGCC
GTGTCGACCA TGAAGAAAGG CGCGGTCGAC TTCATTGAAA AGCCGTTCGA CGAATCCGAA
CTGCGCGAGC TGGTGGAACG CATGCTCAGC AAGGCGCGCA GCGAAGACTC GGTCGCCCGC
GAGCAAAAGG CCGCCAAGGA CCTGCTCAGC CGCCTGACCA CACGCGAGCA GCAGGTGCTG
GAGCGCATCG TCGCCGGGCG TCTGAACAAG CAGATTGCAG ACGATCTGGG CATTTCCATC
AAGACGGTGG AAGCACACCG TGCCAACATC ATGGAAAAGC TCAACGTGAA TACGGTGGCA
GACTTGTTGC GCCTCGCCCT GTCTCGCAAC GCCTGA
 
Protein sequence
MSTTPAAVAP RNETVFVVDD DEAMRDSLTW LLEGNGYTVR TYRSAEEFLV DDKRGEGVGC 
LILDVRMQGM SGPELQDRLL AENNRMPIVF VTGHGDVPLA VSTMKKGAVD FIEKPFDESE
LRELVERMLS KARSEDSVAR EQKAAKDLLS RLTTREQQVL ERIVAGRLNK QIADDLGISI
KTVEAHRANI MEKLNVNTVA DLLRLALSRN A