Gene BamMC406_3516 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_3516 
Symbol 
ID6181245 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand+ 
Start bp445554 
End bp446186 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content67% 
IMG OID641683285 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_001810199 
Protein GI172062548 
COG category[T] Signal transduction mechanisms 
COG ID[COG4566] Response regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.584359 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.0331166 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGTCAC CCGCTCCGAT CGTATACATC GTCGACGACG ACAGCGGCAT GCGGACGTCG 
CTCGCGTGGT TGCTCGAATC GGTCGGCATC GCGTCCGAAG GATTCGCGAA TGCCGCCGAC 
TTTCTCGCGC GCTTCGACGT GAACCTGCCC GCGTGCCTGG TGCTCGACGT GAGGATGCCG 
GAGAAAAGCG GTTTCGACGT GCAGGTGGAG CTGAATGCGC GCGGCGCGAC GCTGCCGGTG 
ATCTTCGTCA GCGGGCACGG CGACATTCCG ATGTCGGTGC GCGCGCTGCA GAACGGCGCG 
ATCGACTTCG TCGAGAAGCC GTACAACTCG CAGCAGATGC TCGAGCGCGT GCAACGCGCG 
CTGCGGCTCG CGCAGCAGCG GCACGCGGTC GACCGGCATC ATCGCGAGCT GCGCCAGCGG 
CTCGATGCGC TGACCGCGCG GGAGAAGGAA GTATTGCGCG GCGTCATCGA CGGCAAGGGC 
AGCAAGCAGA TCGCGTCGGA CCTGTCGATC AGCGTGAAGA CCGTCGACGT GCATCGGGCG 
AGCATCAAGG AGAAGCTCGG CGCGACGTCG ATCGCCGCGC TCGTGCGCGA CGTGATGGTC 
GTGTGGGGCG GCGACAACGA AACGCCGCGC TAG
 
Protein sequence
MTSPAPIVYI VDDDSGMRTS LAWLLESVGI ASEGFANAAD FLARFDVNLP ACLVLDVRMP 
EKSGFDVQVE LNARGATLPV IFVSGHGDIP MSVRALQNGA IDFVEKPYNS QQMLERVQRA 
LRLAQQRHAV DRHHRELRQR LDALTAREKE VLRGVIDGKG SKQIASDLSI SVKTVDVHRA 
SIKEKLGATS IAALVRDVMV VWGGDNETPR