Gene Shew_3240 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3240 
Symbol 
ID4921524 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand- 
Start bp3873857 
End bp3874480 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content58% 
IMG OID640164850 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_001095365 
Protein GI127514168 
COG category[T] Signal transduction mechanisms 
COG ID[COG4566] Response regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.989265 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCAAC AAATAGAGCA AACCGTATAC ATTGTCGATA ACGACGAGGC GATCCGCGAG 
GCGATGGCCT TCCTGATGGA GTCCGTCGGC CTACCCTGCA AGCTGTACTG CTCGGCGCAG 
GAGTTTCTCG ACGACTATTC GCCGCAGATG AGAGGCTGTC TGGTGCTGGA CGTGCGCATG 
CCCAAGATGA GCGGCATGGA GCTGCAGCAG AAGCTAAACG AGCGTCAGGT ATCCCTACCT 
ATCATCTTCA TCAGCGGTCA TGGCGATGTG CCCATGGCGG TCAAGGCGAT GCGCCAAGGC 
GCCTTCGACT TCATCCCCAA GCCGTTTCGC GATCAGGAGC TGCTGGATCG CATCAATCTG 
GCGCTGGAGC AGGAGGCGCA GCTGCGTCTG GTGCATCAGC AGCTGAGTCA GATAAAAGAA 
CGCCTGGCGA CTCTTACCGG ACGTGAGCGG GAGATCCTCG ACAATATCGT CATGGGGAAA 
TCCAACAAGC TTATCGCCAT CGAGCTTGAG CTGAGTCAAC GCACCGTGGA GATCCACCGC 
GCCCGGGTGA TGGAGAAGAT GACCTGCGAC TCCCTGGCCG AACTGGTACA CGACATCACG 
TTGATCAAGT CTTCAGACGC CTGA
 
Protein sequence
MAQQIEQTVY IVDNDEAIRE AMAFLMESVG LPCKLYCSAQ EFLDDYSPQM RGCLVLDVRM 
PKMSGMELQQ KLNERQVSLP IIFISGHGDV PMAVKAMRQG AFDFIPKPFR DQELLDRINL 
ALEQEAQLRL VHQQLSQIKE RLATLTGRER EILDNIVMGK SNKLIAIELE LSQRTVEIHR 
ARVMEKMTCD SLAELVHDIT LIKSSDA