| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1194 |
|---|
| Symbol | |
|---|
| ID | 4037996 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 1308659 |
|---|
| End bp | 1309291 |
|---|
| Gene Length | 633 bp |
|---|
| Protein Length | 210 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637976580 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_583349 |
|---|
| Protein GI | 94310139 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4566] Response regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.00813352 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.892025 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCAA CGCCCAGCCC CACGCCTCAT CGTGGCGAGA CCGTATTCAT CGTCGACGAC
GATGAAGCCA TGCGTGACTC GCTGACCTGG CTGCTCGAGG GCAACGGCTA CCAGGTGCGC
AGCTTCAACA GCGCCGAGCA GTTCCTGTCC GCCTACGACG CCAGCCAGGT TTCGTGCCTG
ATCCTGGACG TCCGTATGCC CGGCATGAGC GGCCCGGAGT TGCAGGAGCG CATGATCGCC
GAGAACATCG ACATCCCGAT CGTCTTCATC ACCGGCCACG GCGACGTGCC GATGGCGGTC
TCGACGATGA AGCGCGGCGC GATCGACTTC ATCGAGAAGC CGTTCGACGA ATCGGAACTG
CGCTCGCTGG TGGAACGGAT GCTGCAGAAA GCCCGCACCG ATCACTCGGC CGCGCGCGAG
CAGCGTGCCG CCAAGGACCT GCTGAGCAAG CTGACCACGC GCGAGCAGCA GGTGCTCGAG
CGCATCGTGG CAGGCCGTCT GAACAAGCAG ATCGCCGACG ACCTGGGCAT TTCCATCAAG
ACCGTGGAGG CGCACCGCGC CAACATCATG GAAAAGCTCA ACGTCAACAC GGTGGCGGAT
CTGTTGCGCC TGGCGCTCTC GCGCAATAGC TGA
|
|---|
| Protein sequence | MTATPSPTPH RGETVFIVDD DEAMRDSLTW LLEGNGYQVR SFNSAEQFLS AYDASQVSCL
ILDVRMPGMS GPELQERMIA ENIDIPIVFI TGHGDVPMAV STMKRGAIDF IEKPFDESEL
RSLVERMLQK ARTDHSAARE QRAAKDLLSK LTTREQQVLE RIVAGRLNKQ IADDLGISIK
TVEAHRANIM EKLNVNTVAD LLRLALSRNS
|
|---|
| |