| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5318 |
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| Symbol | |
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| ID | 4042179 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | - |
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| Start bp | 2024674 |
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| End bp | 2025417 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637980736 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_587446 |
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| Protein GI | 94314237 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4566] Response regulator |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00034283 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.590249 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCGGGAC GCATCGCGTG GCCGCTTGCA TTTCAGGGGA AAGCGCCGAT AATCCCACTT
CCCGGAACAA ATGCCCCCAG GATCGCCATG ACGCGCGACA GGATCGAAGA GGGTGGTGAA
AGTGAAGAAA GCGCGGTGCT GGTCGTCGAT GACGATCAGG ATGTGCGCGT GGCGCTATCC
AGCCTGTTCC GCTCGGCGGG ACTCGCGGCG GAGTCGTTCG CCTCGGCCGA GGAATTGCTC
GCGCACGGCA TTCCGGATCG GCCCACCTGC ATCGTGCTCG ATGTGCATCT GCATGGCGCG
AGCGGCCTCG ACCTGCAGGC CACGCTCAAC CGGGCGGGCC GCCATGCGTC GATCGTATTC
ATCTCCGGCC GTGGTGACGT CCCGATGACT GTGGCGGCCA TGAAGGCCGG CGCCGTCAAC
TTCATCGCCA AGCCATTCCG CGACCAGGAC CTGCTCGACG CGGTTGACGA GGCCTTGCAG
CGCGACCGGG CGCAGCGCGA GGCCGAGGCG CAGAGCCGGC AGCTTCGCGA TCATTTCGAC
ACCCTGACCG GCCGGGAGCA GGAAGTCATG CAACTGGCGG CGCGTGGCCT GATGAACAAG
CAGATCGCCG ACGACCTCGG CATCAGCGAG GCCACGGTCA AGATCTATCG CGGTCACGCC
ATGCGCAAGA TGCAGGCCCG CACTTTCGCC GAACTGGTCA TCATGGCCCA GTCTCTCGGG
CTGGTGCAGG ACGACGCCGG ATAG
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| Protein sequence | MPGRIAWPLA FQGKAPIIPL PGTNAPRIAM TRDRIEEGGE SEESAVLVVD DDQDVRVALS
SLFRSAGLAA ESFASAEELL AHGIPDRPTC IVLDVHLHGA SGLDLQATLN RAGRHASIVF
ISGRGDVPMT VAAMKAGAVN FIAKPFRDQD LLDAVDEALQ RDRAQREAEA QSRQLRDHFD
TLTGREQEVM QLAARGLMNK QIADDLGISE ATVKIYRGHA MRKMQARTFA ELVIMAQSLG
LVQDDAG
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