Gene Avi_5502 details

Gene Information

• Locus tag: Avi_5502
• Symbol: nwsB
• ID: 7381419
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 497816
• End bp: 498454
• Gene Length: 639 bp
• Protein Length: 212 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643649091
• Product: two component response regulator
• Protein accession: YP_002547328
• Protein GI: 222106537
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG4566] Response regulator

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGGCCA ACCCACCGCA ACAGGATGAA CATGAGCCGG TTGTCTATGT GATCGATGAT 
GACGCCTCGG TGCGTGCCGC ATTGGAGGAT CTGCTGGCCT CCGTTGGCCT TGCGGTTTGC 
GCCTATGGGT CGATCCAGGA ATTCATGGCA ATGCCGCTTG CCGATGCGCC CGGTTGTCTG 
GTGCTCGACG TGCGGATGCC CGGCCAGAGC GGTCTTGAGT TTCACCAGCA GATGACGAAA 
CTGGGCATAC GGCTGCCGGT GATTTTCATT ACCGGTCATG GGGATATCCC CATGTCGGTC 
AAGGCGATGA AAAACGGTGC TATCGAGTTC CTGACCAAAC CGTTTCGGGA TCAGGACCTT 
TTGGACGCCA TTCAGCAGGG TATCGAAAAT GACCGTGCGC AGCGACGGCA GGATCATCTA 
TCCTCCGGCT TGCGGGAGTT ATGGCAAACG CTGACGCCGG GCGAGCGGGA GGTGATGGAA 
CTGGTTGTTC AGGGGCGTCT CAACAAACAG ATTGCCGGCG ATCTCGGTGT CAGCGAAATC 
ACCGTCAAGG TTCGCCGCGC CCAGTTGATG CGCAAACTCA ATGCCAAATC CGTCGCCGAT 
CTGGTGCGGA TCTGGGATCG GCTGGCGGTG CCGGATTGA 

 

Protein sequence

MMANPPQQDE HEPVVYVIDD DASVRAALED LLASVGLAVC AYGSIQEFMA MPLADAPGCL 
VLDVRMPGQS GLEFHQQMTK LGIRLPVIFI TGHGDIPMSV KAMKNGAIEF LTKPFRDQDL 
LDAIQQGIEN DRAQRRQDHL SSGLRELWQT LTPGEREVME LVVQGRLNKQ IAGDLGVSEI 
TVKVRRAQLM RKLNAKSVAD LVRIWDRLAV PD