Gene PSPTO_5548 details

Gene Information

• Locus tag: PSPTO_5548
• ID: 1187240
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 6319798
• End bp: 6320436
• Gene Length: 639 bp
• Protein Length: 212 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637396867
• Product: DNA-binding response regulator, LuxR family
• Protein accession: NP_795272
• Protein GI: 28872653
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG4566] Response regulator

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACACAC TCGCTGCTGC CCCGCAGGCC GAAGAGCCGA TCATCTATGT GATCGACGAC 
GACCTGTCGG TGCGTTCTTC GCTGGAAGAC CTGTTGGCGT CGGTGGGCCT GCGCAGCCTG 
TTGTTCGGCT CGACCAAAGC GTTCCTGGAG GCTTCACGCC CTGATGTGCC GGGCTGCCTG 
ATTCTGGACA TCCGCATGCC GGGCATGAGC GGCCTGGACT TTCAGGAGCA TATGGCCAAA 
TCCGGGATTT TTCTGCCGGT CATTTTCATC ACCGGGCATG GCGACATTCC CATGTCGGTG 
CGGGCGATGA AGGCGGGCGC GATTGAGTTT CTGACCAAAC CCTTTCGCGA GCAGGACCTG 
CTGGATGCCA TCCAGCAAGG GCTGGCGCAG GATCGCAGCC GTCGCCAGAG CGCAGCGATC 
GAAGCCCGCT TGCAGCGCCG CCACGCCAGC CTCAATCAGG GCGAGCAGCA GGTGATGGCG 
CTGGTCGTCA GCGGCTTGCT CAACAAGCAG ATTGCCGCGC AACTGAACGT GAGTGAAATC 
ACCGTCAAGG TTCGACGCGG CTCGGTCATG CGCAAGATGG AAGCCGACTC GCTGGCTGAT 
CTGGTCAAGT TCGCCGAGCG GCTTAAAGAG CTTCATTGA 

 

Protein sequence

MNTLAAAPQA EEPIIYVIDD DLSVRSSLED LLASVGLRSL LFGSTKAFLE ASRPDVPGCL 
ILDIRMPGMS GLDFQEHMAK SGIFLPVIFI TGHGDIPMSV RAMKAGAIEF LTKPFREQDL 
LDAIQQGLAQ DRSRRQSAAI EARLQRRHAS LNQGEQQVMA LVVSGLLNKQ IAAQLNVSEI 
TVKVRRGSVM RKMEADSLAD LVKFAERLKE LH