| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5293 |
|---|
| Symbol | |
|---|
| ID | 5195613 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009507 |
|---|
| Strand | - |
|---|
| Start bp | 193631 |
|---|
| End bp | 194242 |
|---|
| Gene Length | 612 bp |
|---|
| Protein Length | 203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640579220 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001260168 |
|---|
| Protein GI | 148550729 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4566] Response regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAGTG ATCCGATTGT TTATGTGATC GATGACGACG ATAGCGTCCG GCATTCGCTG
GAATTTCTCC TCGATGTGGC GGGGATACGG GTGCGCTCCT ATGCTTCGGC CGACGCCTTT
CTCAAATCAT CGCCGCCTCT CGCCGGCGCC TGCCTCGTGA CCGACGTGCG CATGCCGGGG
ATGACCGGCA TCGAGCTGGC CGAAAAGCTG CAGCACGGGG GCGCAGGAGT CCCTGTCATC
GTCGTGACCG GGCATGCCGA CGTCCCGCTG GCGATCCAGG CGATGAAAGC CGGCGTGGCG
GACTTCATCG AAAAGCCGTT CGATGACGAG GTCATGCTGA GCGCGATCCG CAACGCGCTG
GCTCGCACCG CGGGAGATGC CGCCTCCGCC ACGGAAAGGC AGGCCATCCT CGACCGCATC
GCCACGCTCA GCCCGCGCGA GCGCGAGGTC ATGGACGGCC TCGTCGCGGG CCAGGCGAAC
AAGGCGATCG CCTATGACCT GGAGATCAGC GCGAGGACGG TCGAGGTCTA CCGCGCCAAT
GTCATGATGA AAATGCAGGC AAAGACCCTG TCCGACCTCG TGCGGATGGT CACGATCGCG
CGGCTATCCT GA
|
|---|
| Protein sequence | MASDPIVYVI DDDDSVRHSL EFLLDVAGIR VRSYASADAF LKSSPPLAGA CLVTDVRMPG
MTGIELAEKL QHGGAGVPVI VVTGHADVPL AIQAMKAGVA DFIEKPFDDE VMLSAIRNAL
ARTAGDAASA TERQAILDRI ATLSPREREV MDGLVAGQAN KAIAYDLEIS ARTVEVYRAN
VMMKMQAKTL SDLVRMVTIA RLS
|
|---|
| |