More than 300 homologs were found in PanDaTox collection
for query gene Rpic_1949 on replicon NC_010682
Organism: Ralstonia pickettii 12J



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010682  Rpic_1949  two component transcriptional regulator, LuxR family  100 
 
 
211 aa  427  1e-119  Ralstonia pickettii 12J  Bacteria  normal  0.24135  normal  0.0521212 
 
 
-
 
NC_012856  Rpic12D_1621  two component transcriptional regulator, LuxR family  99.53 
 
 
211 aa  426  1e-118  Ralstonia pickettii 12D  Bacteria  normal  0.171805  normal 
 
 
-
 
NC_003295  RSc1597  response regulator transcription regulator protein  96.65 
 
 
210 aa  412  1e-114  Ralstonia solanacearum GMI1000  Bacteria  normal  0.395881  normal 
 
 
-
 
NC_007347  Reut_A1301  LuxR response regulator receiver  79.62 
 
 
210 aa  345  3e-94  Ralstonia eutropha JMP134  Bacteria  normal  0.549132  n/a   
 
 
-
 
NC_007973  Rmet_1194  two component LuxR family transcriptional regulator  79.15 
 
 
210 aa  343  1e-93  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00813352  normal  0.892025 
 
 
-
 
NC_007651  BTH_I1862  LuxR family DNA-binding response regulator  74.63 
 
 
212 aa  310  1e-83  Burkholderia thailandensis E264  Bacteria  normal  0.340696  n/a   
 
 
-
 
NC_006348  BMA1723  LuxR family DNA-binding response regulator  74.15 
 
 
212 aa  307  5.9999999999999995e-83  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0901353  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2232  LuxR family DNA-binding response regulator  74.15 
 
 
212 aa  307  5.9999999999999995e-83  Burkholderia mallei SAVP1  Bacteria  normal  0.97455  n/a   
 
 
-
 
NC_009076  BURPS1106A_2670  LuxR family DNA-binding response regulator  74.15 
 
 
212 aa  307  5.9999999999999995e-83  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2748  LuxR family DNA-binding response regulator  74.15 
 
 
212 aa  307  5.9999999999999995e-83  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1505  LuxR family DNA-binding response regulator  74.15 
 
 
212 aa  307  5.9999999999999995e-83  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A3087  LuxR family DNA-binding response regulator  74.15 
 
 
212 aa  307  5.9999999999999995e-83  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_2614  LuxR family DNA-binding response regulator  74.15 
 
 
212 aa  307  5.9999999999999995e-83  Burkholderia pseudomallei 668  Bacteria  normal  0.37823  n/a   
 
 
-
 
NC_010508  Bcenmc03_2157  two component LuxR family transcriptional regulator  74.15 
 
 
212 aa  307  8e-83  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A5445  two component LuxR family transcriptional regulator  74.15 
 
 
212 aa  307  8e-83  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_2049  two component LuxR family transcriptional regulator  74.15 
 
 
212 aa  307  8e-83  Burkholderia ambifaria MC40-6  Bacteria  normal  0.435361  normal 
 
 
-
 
NC_008390  Bamb_2176  two component LuxR family transcriptional regulator  74.15 
 
 
212 aa  307  8e-83  Burkholderia ambifaria AMMD  Bacteria  normal  0.116055  n/a   
 
 
-
 
NC_008542  Bcen2424_2139  two component LuxR family transcriptional regulator  74.15 
 
 
212 aa  307  8e-83  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_1131  two component LuxR family transcriptional regulator  74.15 
 
 
212 aa  306  1.0000000000000001e-82  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0589444  normal  0.612677 
 
 
-
 
NC_008062  Bcen_5938  two component LuxR family transcriptional regulator  73.66 
 
 
212 aa  305  3e-82  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.172889  n/a   
 
 
-
 
NC_010622  Bphy_1472  two component LuxR family transcriptional regulator  74.5 
 
 
214 aa  303  1.0000000000000001e-81  Burkholderia phymatum STM815  Bacteria  normal  normal  0.781461 
 
 
-
 
NC_010681  Bphyt_2593  two component transcriptional regulator, LuxR family  74 
 
 
214 aa  302  2.0000000000000002e-81  Burkholderia phytofirmans PsJN  Bacteria  normal  0.382122  hitchhiker  0.00235574 
 
 
-
 
NC_007951  Bxe_A1539  two component LuxR family transcriptional regulator  74 
 
 
214 aa  301  5.000000000000001e-81  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.274992 
 
 
-
 
NC_009379  Pnuc_0732  response regulator receiver protein  71.21 
 
 
215 aa  280  1e-74  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.298469  n/a   
 
 
-
 
NC_010524  Lcho_1644  two component LuxR family transcriptional regulator  68.29 
 
 
207 aa  272  3e-72  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0578076 
 
 
-
 
NC_010531  Pnec_0704  two component transcriptional regulator, LuxR family  67.8 
 
 
214 aa  271  5.000000000000001e-72  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  0.753304  normal  0.399327 
 
 
-
 
NC_008825  Mpe_A2130  two component LuxR family transcriptional regulator  67.32 
 
 
207 aa  271  5.000000000000001e-72  Methylibium petroleiphilum PM1  Bacteria  normal  0.281977  normal 
 
 
-
 
NC_008752  Aave_2460  two component LuxR family transcriptional regulator  67.48 
 
 
208 aa  271  7e-72  Acidovorax citrulli AAC00-1  Bacteria  normal  0.293905  normal 
 
 
-
 
NC_008786  Veis_1921  response regulator receiver protein  66.34 
 
 
208 aa  267  7e-71  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.287441  normal  0.0849999 
 
 
-
 
NC_007948  Bpro_2674  two component LuxR family transcriptional regulator  66.02 
 
 
208 aa  266  1e-70  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_3982  two component LuxR family transcriptional regulator  66.67 
 
 
216 aa  266  2e-70  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.0179399 
 
 
-
 
NC_011992  Dtpsy_1655  two component transcriptional regulator, LuxR family  67.82 
 
 
208 aa  265  5e-70  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2127  two component LuxR family transcriptional regulator  67.82 
 
 
208 aa  265  5e-70  Acidovorax sp. JS42  Bacteria  normal  0.583598  normal  0.797665 
 
 
-
 
NC_007908  Rfer_2210  two component LuxR family transcriptional regulator  65.53 
 
 
208 aa  262  3e-69  Rhodoferax ferrireducens T118  Bacteria  normal  0.891166  n/a   
 
 
-
 
NC_008781  Pnap_1779  response regulator receiver protein  65.53 
 
 
208 aa  261  4e-69  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.264941  hitchhiker  0.00228897 
 
 
-
 
NC_012791  Vapar_2160  two component transcriptional regulator, LuxR family  65.05 
 
 
210 aa  259  3e-68  Variovorax paradoxus S110  Bacteria  normal  0.563306  n/a   
 
 
-
 
NC_007298  Daro_3108  LuxR response regulator receiver  52.94 
 
 
202 aa  209  2e-53  Dechloromonas aromatica RCB  Bacteria  normal  0.786061  normal 
 
 
-
 
NC_011662  Tmz1t_3192  two component transcriptional regulator, LuxR family  52.68 
 
 
212 aa  201  5e-51  Thauera sp. MZ1T  Bacteria  normal  0.513085  n/a   
 
 
-
 
NC_011662  Tmz1t_3400  two component transcriptional regulator, LuxR family  50.26 
 
 
201 aa  193  1e-48  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2041  response regulator receiver protein  50.51 
 
 
214 aa  187  8e-47  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.212509  hitchhiker  0.00400016 
 
 
-
 
NC_007298  Daro_2996  LuxR response regulator receiver  46.07 
 
 
198 aa  179  4e-44  Dechloromonas aromatica RCB  Bacteria  normal  0.437807  normal 
 
 
-
 
NC_007484  Noc_1701  two component LuxR family transcriptional regulator  47.26 
 
 
201 aa  176  2e-43  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0166117  n/a   
 
 
-
 
NC_008554  Sfum_0582  two component LuxR family transcriptional regulator  44.56 
 
 
206 aa  172  2.9999999999999996e-42  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.812865 
 
 
-
 
NC_010338  Caul_2344  two component LuxR family transcriptional regulator  45.88 
 
 
208 aa  171  5.999999999999999e-42  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1342  response regulator FixJ  44.28 
 
 
205 aa  171  6.999999999999999e-42  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.400465  normal 
 
 
-
 
NC_009485  BBta_2788  response regulator FixJ  44 
 
 
205 aa  171  7.999999999999999e-42  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0210669  normal  0.0766422 
 
 
-
 
NC_009092  Shew_3240  two component LuxR family transcriptional regulator  44.27 
 
 
207 aa  170  1e-41  Shewanella loihica PV-4  Bacteria  normal  normal  0.989265 
 
 
-
 
NC_007404  Tbd_1743  two component LuxR family transcriptional regulator  44.72 
 
 
209 aa  169  3e-41  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.518394 
 
 
-
 
NC_007778  RPB_1363  response regulator FixJ  43.28 
 
 
205 aa  169  4e-41  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.433868  normal 
 
 
-
 
NC_009507  Swit_5293  two component LuxR family transcriptional regulator  43.3 
 
 
203 aa  168  5e-41  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0943  two component LuxR family transcriptional regulator  45.31 
 
 
214 aa  168  7e-41  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3275  response regulator FixJ  47.67 
 
 
205 aa  167  8e-41  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_2096  two component LuxR family transcriptional regulator  42.5 
 
 
212 aa  167  9e-41  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3812  two component LuxR family transcriptional regulator  42.45 
 
 
208 aa  167  1e-40  Dechloromonas aromatica RCB  Bacteria  normal  0.922787  normal  0.026414 
 
 
-
 
NC_011662  Tmz1t_3866  two component transcriptional regulator, LuxR family  46.35 
 
 
224 aa  167  1e-40  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0478  two component transcriptional regulator, LuxR family  42.11 
 
 
200 aa  166  2e-40  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0686  two component LuxR family transcriptional regulator  41.87 
 
 
203 aa  166  2.9999999999999998e-40  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0467  two component LuxR family transcriptional regulator  42.11 
 
 
200 aa  166  2.9999999999999998e-40  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_2460  two component LuxR family transcriptional regulator  45.36 
 
 
210 aa  166  2.9999999999999998e-40  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.475025 
 
 
-
 
NC_009665  Shew185_0451  response regulator receiver protein  42.11 
 
 
200 aa  166  2.9999999999999998e-40  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1744  response regulator receiver protein  44.28 
 
 
213 aa  165  5.9999999999999996e-40  Xanthobacter autotrophicus Py2  Bacteria  normal  0.933486  normal  0.721753 
 
 
-
 
NC_008391  Bamb_5346  two component LuxR family transcriptional regulator  42.08 
 
 
210 aa  164  8e-40  Burkholderia ambifaria AMMD  Bacteria  normal  0.0593225  normal  0.752943 
 
 
-
 
NC_011894  Mnod_2117  response regulator FixJ  45.13 
 
 
205 aa  164  9e-40  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_3610  two component LuxR family transcriptional regulator  41.58 
 
 
210 aa  164  1.0000000000000001e-39  Burkholderia cenocepacia HI2424  Bacteria  normal  0.603365  normal 
 
 
-
 
NC_007484  Noc_2445  two component LuxR family transcriptional regulator  45.83 
 
 
208 aa  164  1.0000000000000001e-39  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_3910  two component LuxR family transcriptional regulator  41.58 
 
 
210 aa  164  1.0000000000000001e-39  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.855973 
 
 
-
 
NC_008577  Shewana3_3697  two component LuxR family transcriptional regulator  41.12 
 
 
201 aa  164  1.0000000000000001e-39  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3041  two component LuxR family transcriptional regulator  40.61 
 
 
203 aa  164  1.0000000000000001e-39  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3862  response regulator receiver protein  41.05 
 
 
200 aa  163  2.0000000000000002e-39  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B2505  two component LuxR family transcriptional regulator  41.58 
 
 
210 aa  163  2.0000000000000002e-39  Burkholderia sp. 383  Bacteria  normal  0.382458  normal  0.897172 
 
 
-
 
NC_010552  BamMC406_3516  two component LuxR family transcriptional regulator  41.58 
 
 
210 aa  163  2.0000000000000002e-39  Burkholderia ambifaria MC40-6  Bacteria  normal  0.584359  normal  0.0331166 
 
 
-
 
NC_004347  SO_4157  DNA-binding response regulator  41.05 
 
 
202 aa  162  3e-39  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009621  Smed_6273  response regulator FixJ  47.52 
 
 
204 aa  162  4.0000000000000004e-39  Sinorhizobium medicae WSM419  Bacteria  normal  0.664827  normal  0.544702 
 
 
-
 
NC_010086  Bmul_5088  two component LuxR family transcriptional regulator  41.09 
 
 
241 aa  162  4.0000000000000004e-39  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.685625 
 
 
-
 
NC_008321  Shewmr4_3517  two component LuxR family transcriptional regulator  41.12 
 
 
201 aa  162  4.0000000000000004e-39  Shewanella sp. MR-4  Bacteria  normal  0.751217  normal 
 
 
-
 
NC_011004  Rpal_4727  response regulator FixJ  43.65 
 
 
203 aa  161  5.0000000000000005e-39  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_1616  two component LuxR family transcriptional regulator  42.78 
 
 
218 aa  161  7e-39  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_0436  two component LuxR family transcriptional regulator  41.05 
 
 
202 aa  161  8.000000000000001e-39  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1500  Signal transduction histidine kinase (STHK) with CheB and CheR activity  43.59 
 
 
1483 aa  160  1e-38  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2222  response regulator FixJ  44.22 
 
 
205 aa  160  2e-38  Chelativorans sp. BNC1  Bacteria  normal  0.0446915  n/a   
 
 
-
 
NC_011666  Msil_1825  two component transcriptional regulator, LuxR family  43.9 
 
 
205 aa  159  3e-38  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0736095 
 
 
-
 
NC_007650  BTH_II0317  LuxR family DNA-binding response regulator  41.58 
 
 
250 aa  159  3e-38  Burkholderia thailandensis E264  Bacteria  normal  0.0309445  n/a   
 
 
-
 
NC_009428  Rsph17025_0245  response regulator receiver protein  43.81 
 
 
202 aa  159  3e-38  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_1465  two component transcriptional regulator, LuxR family  44.78 
 
 
247 aa  159  3e-38  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_0630  response regulator FixJ  44.16 
 
 
204 aa  159  3e-38  Caulobacter sp. K31  Bacteria  normal  0.136769  normal  0.239148 
 
 
-
 
NC_009438  Sputcn32_0534  response regulator receiver protein  40 
 
 
200 aa  158  6e-38  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_1719  response regulator receiver  40.7 
 
 
231 aa  158  7e-38  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.760885  n/a   
 
 
-
 
NC_007925  RPC_4053  response regulator FixJ  42.93 
 
 
205 aa  157  8e-38  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5502  two component response regulator  39.51 
 
 
212 aa  157  9e-38  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_2166  two component transcriptional regulator, LuxR family  39.22 
 
 
220 aa  157  1e-37  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_1906  response regulator FixJ  42.64 
 
 
205 aa  157  1e-37  Nitrobacter hamburgensis X14  Bacteria  normal  0.700153  n/a   
 
 
-
 
NC_009512  Pput_2871  response regulator receiver protein  43.08 
 
 
206 aa  156  2e-37  Pseudomonas putida F1  Bacteria  normal  0.313361  normal  0.346414 
 
 
-
 
NC_007298  Daro_2491  LuxR response regulator receiver  43.59 
 
 
211 aa  156  2e-37  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.0000000456787  normal 
 
 
-
 
NC_007406  Nwi_1028  response regulator FixJ  41.84 
 
 
205 aa  156  2e-37  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0907  two component LuxR family transcriptional regulator  43.3 
 
 
202 aa  156  2e-37  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.285724  n/a   
 
 
-
 
NC_009049  Rsph17029_2567  response regulator receiver protein  43.3 
 
 
202 aa  156  2e-37  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.94208 
 
 
-
 
NC_010622  Bphy_0645  two component LuxR family transcriptional regulator  41.12 
 
 
240 aa  155  3e-37  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_1578  two component LuxR family transcriptional regulator  42.41 
 
 
207 aa  155  3e-37  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.661779  n/a   
 
 
-
 
NC_009511  Swit_0268  two component LuxR family transcriptional regulator  44.1 
 
 
203 aa  156  3e-37  Sphingomonas wittichii RW1  Bacteria  normal  0.0126561  normal  0.200699 
 
 
-
 
NC_011004  Rpal_1519  two component transcriptional regulator, LuxR family  39.81 
 
 
228 aa  155  4e-37  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.444774  n/a   
 
 
-
 
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