More than 300 homologs were found in PanDaTox collection
for query gene BamMC406_3516 on replicon NC_010552
Organism: Burkholderia ambifaria MC40-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010552  BamMC406_3516  two component LuxR family transcriptional regulator  100 
 
 
210 aa  427  1e-119  Burkholderia ambifaria MC40-6  Bacteria  normal  0.584359  normal  0.0331166 
 
 
-
 
NC_008391  Bamb_5346  two component LuxR family transcriptional regulator  99.05 
 
 
210 aa  425  1e-118  Burkholderia ambifaria AMMD  Bacteria  normal  0.0593225  normal  0.752943 
 
 
-
 
NC_008543  Bcen2424_3610  two component LuxR family transcriptional regulator  95.71 
 
 
210 aa  408  1e-113  Burkholderia cenocepacia HI2424  Bacteria  normal  0.603365  normal 
 
 
-
 
NC_010515  Bcenmc03_3910  two component LuxR family transcriptional regulator  95.71 
 
 
210 aa  408  1e-113  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.855973 
 
 
-
 
NC_007511  Bcep18194_B2505  two component LuxR family transcriptional regulator  94.76 
 
 
210 aa  405  1.0000000000000001e-112  Burkholderia sp. 383  Bacteria  normal  0.382458  normal  0.897172 
 
 
-
 
NC_010086  Bmul_5088  two component LuxR family transcriptional regulator  92.86 
 
 
241 aa  397  9.999999999999999e-111  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.685625 
 
 
-
 
NC_007650  BTH_II0317  LuxR family DNA-binding response regulator  85.24 
 
 
250 aa  352  2e-96  Burkholderia thailandensis E264  Bacteria  normal  0.0309445  n/a   
 
 
-
 
NC_010681  Bphyt_2166  two component transcriptional regulator, LuxR family  79.33 
 
 
220 aa  339  2e-92  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_3108  LuxR response regulator receiver  50.99 
 
 
202 aa  205  4e-52  Dechloromonas aromatica RCB  Bacteria  normal  0.786061  normal 
 
 
-
 
NC_009092  Shew_3240  two component LuxR family transcriptional regulator  42.93 
 
 
207 aa  192  4e-48  Shewanella loihica PV-4  Bacteria  normal  normal  0.989265 
 
 
-
 
NC_007347  Reut_A1301  LuxR response regulator receiver  44.44 
 
 
210 aa  183  1.0000000000000001e-45  Ralstonia eutropha JMP134  Bacteria  normal  0.549132  n/a   
 
 
-
 
NC_007973  Rmet_1194  two component LuxR family transcriptional regulator  44.44 
 
 
210 aa  184  1.0000000000000001e-45  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00813352  normal  0.892025 
 
 
-
 
NC_011662  Tmz1t_3192  two component transcriptional regulator, LuxR family  49.02 
 
 
212 aa  184  1.0000000000000001e-45  Thauera sp. MZ1T  Bacteria  normal  0.513085  n/a   
 
 
-
 
NC_012560  Avin_25360  Response regulator, LuxR family  49.21 
 
 
246 aa  182  4.0000000000000006e-45  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_09690  putative two-component response regulator  48.68 
 
 
214 aa  178  4.999999999999999e-44  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.00000807943  normal 
 
 
-
 
NC_009439  Pmen_3815  response regulator receiver protein  47.09 
 
 
212 aa  177  1e-43  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A0811  two-component response regulator  45.6 
 
 
209 aa  176  2e-43  Methylibium petroleiphilum PM1  Bacteria  normal  0.184612  normal 
 
 
-
 
NC_009076  BURPS1106A_2670  LuxR family DNA-binding response regulator  44 
 
 
212 aa  175  4e-43  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA1723  LuxR family DNA-binding response regulator  44 
 
 
212 aa  175  4e-43  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0901353  n/a   
 
 
-
 
NC_007434  BURPS1710b_2748  LuxR family DNA-binding response regulator  44 
 
 
212 aa  175  4e-43  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_2614  LuxR family DNA-binding response regulator  44 
 
 
212 aa  175  4e-43  Burkholderia pseudomallei 668  Bacteria  normal  0.37823  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2232  LuxR family DNA-binding response regulator  44 
 
 
212 aa  175  4e-43  Burkholderia mallei SAVP1  Bacteria  normal  0.97455  n/a   
 
 
-
 
NC_009080  BMA10247_1505  LuxR family DNA-binding response regulator  44 
 
 
212 aa  175  4e-43  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A3087  LuxR family DNA-binding response regulator  44 
 
 
212 aa  175  4e-43  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_0903  putative two-component response regulator  48.68 
 
 
212 aa  175  5e-43  Pseudomonas aeruginosa PA7  Bacteria  normal  0.96795  n/a   
 
 
-
 
NC_010322  PputGB1_2371  two component LuxR family transcriptional regulator  47.87 
 
 
209 aa  174  6e-43  Pseudomonas putida GB-1  Bacteria  normal  0.820742  normal 
 
 
-
 
NC_007651  BTH_I1862  LuxR family DNA-binding response regulator  44 
 
 
212 aa  174  6e-43  Burkholderia thailandensis E264  Bacteria  normal  0.340696  n/a   
 
 
-
 
NC_008542  Bcen2424_2139  two component LuxR family transcriptional regulator  44 
 
 
212 aa  173  1.9999999999999998e-42  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_2049  two component LuxR family transcriptional regulator  44 
 
 
212 aa  173  1.9999999999999998e-42  Burkholderia ambifaria MC40-6  Bacteria  normal  0.435361  normal 
 
 
-
 
NC_007510  Bcep18194_A5445  two component LuxR family transcriptional regulator  44 
 
 
212 aa  173  1.9999999999999998e-42  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_2157  two component LuxR family transcriptional regulator  44 
 
 
212 aa  173  1.9999999999999998e-42  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_1131  two component LuxR family transcriptional regulator  44 
 
 
212 aa  173  1.9999999999999998e-42  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0589444  normal  0.612677 
 
 
-
 
NC_008390  Bamb_2176  two component LuxR family transcriptional regulator  44 
 
 
212 aa  173  1.9999999999999998e-42  Burkholderia ambifaria AMMD  Bacteria  normal  0.116055  n/a   
 
 
-
 
NC_008062  Bcen_5938  two component LuxR family transcriptional regulator  43.5 
 
 
212 aa  171  5e-42  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.172889  n/a   
 
 
-
 
NC_009512  Pput_2871  response regulator receiver protein  42.86 
 
 
206 aa  171  6.999999999999999e-42  Pseudomonas putida F1  Bacteria  normal  0.313361  normal  0.346414 
 
 
-
 
NC_009719  Plav_2041  response regulator receiver protein  44.44 
 
 
214 aa  170  1e-41  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.212509  hitchhiker  0.00400016 
 
 
-
 
NC_008228  Patl_2096  two component LuxR family transcriptional regulator  43.52 
 
 
212 aa  170  1e-41  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_3551  LuxR family DNA-binding response regulator  47.34 
 
 
210 aa  169  2e-41  Pseudomonas putida KT2440  Bacteria  normal  0.178316  normal 
 
 
-
 
NC_008825  Mpe_A2130  two component LuxR family transcriptional regulator  45.31 
 
 
207 aa  169  2e-41  Methylibium petroleiphilum PM1  Bacteria  normal  0.281977  normal 
 
 
-
 
NC_007484  Noc_2445  two component LuxR family transcriptional regulator  39.41 
 
 
208 aa  170  2e-41  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_2223  response regulator receiver protein  47.34 
 
 
210 aa  169  2e-41  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A1539  two component LuxR family transcriptional regulator  43.84 
 
 
214 aa  169  3e-41  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.274992 
 
 
-
 
NC_010681  Bphyt_2593  two component transcriptional regulator, LuxR family  43.84 
 
 
214 aa  168  4e-41  Burkholderia phytofirmans PsJN  Bacteria  normal  0.382122  hitchhiker  0.00235574 
 
 
-
 
NC_011992  Dtpsy_1655  two component transcriptional regulator, LuxR family  43.39 
 
 
208 aa  168  6e-41  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2127  two component LuxR family transcriptional regulator  43.39 
 
 
208 aa  168  6e-41  Acidovorax sp. JS42  Bacteria  normal  0.583598  normal  0.797665 
 
 
-
 
NC_010002  Daci_3982  two component LuxR family transcriptional regulator  42.86 
 
 
216 aa  167  9e-41  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.0179399 
 
 
-
 
NC_008740  Maqu_2095  response regulator receiver protein  45.3 
 
 
216 aa  167  9e-41  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5502  two component response regulator  43.98 
 
 
212 aa  167  1e-40  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1621  two component LuxR family transcriptional regulator  44.27 
 
 
201 aa  167  1e-40  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0943  two component LuxR family transcriptional regulator  43.88 
 
 
214 aa  166  2e-40  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2460  two component LuxR family transcriptional regulator  41.33 
 
 
208 aa  166  2e-40  Acidovorax citrulli AAC00-1  Bacteria  normal  0.293905  normal 
 
 
-
 
NC_008781  Pnap_1779  response regulator receiver protein  43.46 
 
 
208 aa  166  2e-40  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.264941  hitchhiker  0.00228897 
 
 
-
 
NC_007948  Bpro_2674  two component LuxR family transcriptional regulator  41.27 
 
 
208 aa  166  2.9999999999999998e-40  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_1472  two component LuxR family transcriptional regulator  44.04 
 
 
214 aa  166  2.9999999999999998e-40  Burkholderia phymatum STM815  Bacteria  normal  normal  0.781461 
 
 
-
 
NC_008825  Mpe_A2536  two component regulator  46.11 
 
 
204 aa  165  5e-40  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.378867 
 
 
-
 
NC_012856  Rpic12D_1621  two component transcriptional regulator, LuxR family  41.58 
 
 
211 aa  164  1.0000000000000001e-39  Ralstonia pickettii 12D  Bacteria  normal  0.171805  normal 
 
 
-
 
NC_012853  Rleg_5743  two component transcriptional regulator, LuxR family  40.48 
 
 
212 aa  164  1.0000000000000001e-39  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2400  two component transcriptional regulator, LuxR family  42.35 
 
 
210 aa  164  1.0000000000000001e-39  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1644  two component LuxR family transcriptional regulator  43.75 
 
 
207 aa  163  2.0000000000000002e-39  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0578076 
 
 
-
 
NC_008554  Sfum_0582  two component LuxR family transcriptional regulator  43.39 
 
 
206 aa  162  2.0000000000000002e-39  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.812865 
 
 
-
 
NC_007298  Daro_2996  LuxR response regulator receiver  42.54 
 
 
198 aa  163  2.0000000000000002e-39  Dechloromonas aromatica RCB  Bacteria  normal  0.437807  normal 
 
 
-
 
NC_007298  Daro_3812  two component LuxR family transcriptional regulator  43.88 
 
 
208 aa  162  2.0000000000000002e-39  Dechloromonas aromatica RCB  Bacteria  normal  0.922787  normal  0.026414 
 
 
-
 
NC_010682  Rpic_1949  two component transcriptional regulator, LuxR family  41.58 
 
 
211 aa  163  2.0000000000000002e-39  Ralstonia pickettii 12J  Bacteria  normal  0.24135  normal  0.0521212 
 
 
-
 
NC_012791  Vapar_2160  two component transcriptional regulator, LuxR family  42.41 
 
 
210 aa  162  3e-39  Variovorax paradoxus S110  Bacteria  normal  0.563306  n/a   
 
 
-
 
NC_007484  Noc_1701  two component LuxR family transcriptional regulator  43.39 
 
 
201 aa  162  3e-39  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0166117  n/a   
 
 
-
 
NC_008786  Veis_1921  response regulator receiver protein  42.63 
 
 
208 aa  162  4.0000000000000004e-39  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.287441  normal  0.0849999 
 
 
-
 
NC_007298  Daro_2491  LuxR response regulator receiver  41.55 
 
 
211 aa  162  5.0000000000000005e-39  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.0000000456787  normal 
 
 
-
 
NC_008009  Acid345_3729  two component LuxR family transcriptional regulator  42.71 
 
 
209 aa  162  5.0000000000000005e-39  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1743  two component LuxR family transcriptional regulator  44.21 
 
 
209 aa  161  8.000000000000001e-39  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.518394 
 
 
-
 
NC_010681  Bphyt_2407  two component transcriptional regulator, LuxR family  41.67 
 
 
220 aa  160  9e-39  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.958584 
 
 
-
 
NC_011662  Tmz1t_3400  two component transcriptional regulator, LuxR family  41.75 
 
 
201 aa  160  1e-38  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2459  two component LuxR family transcriptional regulator  42.86 
 
 
215 aa  160  1e-38  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_3713  two component LuxR family transcriptional regulator  43.41 
 
 
208 aa  160  1e-38  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.222966  normal 
 
 
-
 
NC_008700  Sama_2399  response regulator receiver protein  41.18 
 
 
201 aa  160  1e-38  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.635003 
 
 
-
 
NC_003295  RSc1597  response regulator transcription regulator protein  42.63 
 
 
210 aa  160  2e-38  Ralstonia solanacearum GMI1000  Bacteria  normal  0.395881  normal 
 
 
-
 
NC_010505  Mrad2831_1268  two component LuxR family transcriptional regulator  43.3 
 
 
220 aa  160  2e-38  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_2139  two component transcriptional regulator, LuxR family  42.63 
 
 
213 aa  160  2e-38  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2210  two component LuxR family transcriptional regulator  42.63 
 
 
208 aa  160  2e-38  Rhodoferax ferrireducens T118  Bacteria  normal  0.891166  n/a   
 
 
-
 
NC_011662  Tmz1t_3866  two component transcriptional regulator, LuxR family  43.01 
 
 
224 aa  159  3e-38  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_5693  two component LuxR family transcriptional regulator  41.8 
 
 
224 aa  159  3e-38  Burkholderia phymatum STM815  Bacteria  normal  normal  0.247452 
 
 
-
 
NC_011662  Tmz1t_1465  two component transcriptional regulator, LuxR family  42.03 
 
 
247 aa  159  3e-38  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_5088  LuxR response regulator receiver  43.46 
 
 
212 aa  159  4e-38  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_5186  two component LuxR family transcriptional regulator  42.86 
 
 
214 aa  159  4e-38  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.0233056 
 
 
-
 
NC_007794  Saro_1578  two component LuxR family transcriptional regulator  44.67 
 
 
207 aa  159  4e-38  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.661779  n/a   
 
 
-
 
NC_010515  Bcenmc03_5090  two component LuxR family transcriptional regulator  42.86 
 
 
214 aa  159  4e-38  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.159727  normal 
 
 
-
 
NC_008061  Bcen_3181  two component LuxR family transcriptional regulator  42.86 
 
 
214 aa  159  4e-38  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.246114  n/a   
 
 
-
 
NC_009379  Pnuc_0732  response regulator receiver protein  41.54 
 
 
215 aa  157  8e-38  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.298469  n/a   
 
 
-
 
NC_014148  Plim_1719  response regulator receiver  41.36 
 
 
231 aa  157  1e-37  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.760885  n/a   
 
 
-
 
NC_010717  PXO_00709  nodulation protein  42.71 
 
 
200 aa  156  2e-37  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  hitchhiker  0.00695869  n/a   
 
 
-
 
NC_009719  Plav_2380  response regulator receiver protein  41.33 
 
 
208 aa  156  2e-37  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_3511  two component transcriptional regulator, LuxR family  44.5 
 
 
209 aa  156  2e-37  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_4126  response regulator receiver protein  41.8 
 
 
202 aa  155  3e-37  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_5548  DNA-binding response regulator, LuxR family  42.93 
 
 
212 aa  156  3e-37  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3839  two component transcriptional regulator, LuxR family  41.58 
 
 
210 aa  155  3e-37  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.287356  n/a   
 
 
-
 
NC_007778  RPB_0181  two component LuxR family transcriptional regulator  41.24 
 
 
210 aa  155  4e-37  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4618  two component LuxR family transcriptional regulator  43.16 
 
 
224 aa  154  7e-37  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4652  two component LuxR family transcriptional regulator  43.41 
 
 
208 aa  154  7e-37  Polaromonas sp. JS666  Bacteria  normal  0.398364  normal 
 
 
-
 
NC_009511  Swit_0268  two component LuxR family transcriptional regulator  43.98 
 
 
203 aa  154  9e-37  Sphingomonas wittichii RW1  Bacteria  normal  0.0126561  normal  0.200699 
 
 
-
 
NC_008781  Pnap_3894  response regulator receiver protein  44.06 
 
 
208 aa  154  1e-36  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.52621  normal  0.385193 
 
 
-
 
NC_010681  Bphyt_1685  two component transcriptional regulator, LuxR family  42.71 
 
 
215 aa  153  1e-36  Burkholderia phytofirmans PsJN  Bacteria  normal  0.166103  normal  0.907447 
 
 
-
 
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