Gene Rpal_3839 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3839 
Symbol 
ID6411517 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp4126410 
End bp4127042 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content65% 
IMG OID642713720 
Producttwo component transcriptional regulator, LuxR family 
Protein accessionYP_001992813 
Protein GI192292208 
COG category[T] Signal transduction mechanisms 
COG ID[COG4566] Response regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.287356 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGGACA GATCCGACAC GCTGCAGATG GTGCTGGTGG TCGACGACGA CGAGTCGATG 
CGCGTCGCCT TGACCTATCT GTTCCGGTCG ATGGACCTGC AGGTGAAAGT GTTCGGCTCG 
GCCGCGCAGG TGCTCGAAGC CGGGATTCCG GAGATCCCGT GCTGCCTGGT GCTCGACATC 
CGCCTGCCGG GCGTCAGCGG CCTCGATTTC CGGGACGCGC TGGCGAAGGC CGGGCTGGAG 
ATTCCGATCG TGTTCATGAC CGGCCACGGC GATATTCCGA TGTCGGTTCG GGCGATGAAG 
GCGGGCGCGG TGGATTTTCT CACCAAGCCG TTCCGCGACC AGGACATGTT GGACGCCGTC 
ACGCGCGCGC TCGCGAAGGA TCGTGCGCGG CGCGAAGGCG AAGGCGCCCT GGCCGATCTG 
CGGCAGCGCT TCGAGTCGCT GACGCCGCGG CAACGGCAAT TGTTCACCTT CGTCGCCGCC 
GGCCTGATGA ACAAGCAGAT CGCCGGCGAA CTCAATGTCA GCGAAGTCAC CGTCAAGATC 
CATCGCGGCA TCATGATGAA GAAGATGGAC GCGCGAACGG TCGCCGATCT GGTGCGCAAG 
GCGGAGGCGC TGGGGGTCAG GCAGCCGAAT TGA
 
Protein sequence
MTDRSDTLQM VLVVDDDESM RVALTYLFRS MDLQVKVFGS AAQVLEAGIP EIPCCLVLDI 
RLPGVSGLDF RDALAKAGLE IPIVFMTGHG DIPMSVRAMK AGAVDFLTKP FRDQDMLDAV 
TRALAKDRAR REGEGALADL RQRFESLTPR QRQLFTFVAA GLMNKQIAGE LNVSEVTVKI 
HRGIMMKKMD ARTVADLVRK AEALGVRQPN